Lag0017941 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017941
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr5: 12047824 .. 12048189 (+)
RNA-Seq ExpressionLag0017941
SyntenyLag0017941
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATGGTAGCGATAGAAGAAGGAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGTCTCAAAGTAATAAACGATCAACCTAAAAGAAAGATAGACAACTTGAAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATAGTAGCATCCCACCACATATGAAGAGGAAGTTTTCTATTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAGTCCTATAAATGAAGGATCTGATCAAGACCATGATAAAGATAAGAGCTTTTAA

mRNA sequence

ATGAGTATGGTAGCGATAGAAGAAGGAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGTCTCAAAGTAATAAACGATCAACCTAAAAGAAAGATAGACAACTTGAAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATAGTAGCATCCCACCACATATGAAGAGGAAGTTTTCTATTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAGTCCTATAAATGAAGGATCTGATCAAGACCATGATAAAGATAAGAGCTTTTAA

Coding sequence (CDS)

ATGAGTATGGTAGCGATAGAAGAAGGAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGTCTCAAAGTAATAAACGATCAACCTAAAAGAAAGATAGACAACTTGAAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATAGTAGCATCCCACCACATATGAAGAGGAAGTTTTCTATTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAGTCCTATAAATGAAGGATCTGATCAAGACCATGATAAAGATAAGAGCTTTTAA

Protein sequence

MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNLIILTSPINEGSDQDHDKDKSF
Homology
[Close]
BLAST of Lag0017941 vs. NCBI nr
Match: KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-28
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 0 

Query: 1   MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKV 60
           +S+   EE NQC  ST TR SAF+ LS+STSKK RPSTS FDRLK+INDQ +R++ +LKV
Sbjct: 494 LSITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPSTSAFDRLKMINDQQQREMKSLKV 553

Query: 61  KLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNLIILTSPINEGSDQDHDKDKS 120
           K F E N+D K+HS +P  MKRK S+ INTEGSL VKP  II T+PINEG ++  D++KS
Sbjct: 554 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLIVKPRFIIFTNPINEGDEKILDENKS 613

[Close]
BLAST of Lag0017941 vs. NCBI nr
Match: TYK00108.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 0 

Query: 1   MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKV 60
           +SM   EE NQC  ST TR SAF+RLS+STSKK RPSTS FDR+K+INDQ +R++ +LK 
Sbjct: 151 LSMATKEEKNQCPTSTCTRTSAFKRLSISTSKKDRPSTSAFDRVKMINDQQQREMKSLKA 210

Query: 61  KLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNLIILTSPINEGSDQDHDKDKS 120
           K F E N+D K+HS +P  MKRK  + INTEGSL VKP  II T+PINEG ++  D++KS
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLFVDINTEGSLTVKPRFIIFTNPINEGDEKILDENKS 270

[Close]
BLAST of Lag0017941 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 4.9e-28
Identity = 72/120 (60.00%), Postives = 89/120 (74.17%), Query Frame = 0 

Query: 1   MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKV 60
           +SM   EE NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+ NDQ +R++ +LK 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNLIILTSPINEGSDQDHDKDKS 120
           K F E N+D K+HS +P  MKRK S+ INTEGSL VKP  II T+PINEG ++  D++KS
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEKILDENKS 270

[Close]
BLAST of Lag0017941 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 6.5e-28
Identity = 71/120 (59.17%), Postives = 89/120 (74.17%), Query Frame = 0 

Query: 1   MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKV 60
           +SM   EE NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+ NDQ +R++ +LK 
Sbjct: 568 LSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 627

Query: 61  KLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNLIILTSPINEGSDQDHDKDKS 120
           K F E N+D K+H+ +P  MKRK S+ INTEGSL VKP  II T+PINEG ++  D++KS
Sbjct: 628 KPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKPRFIIFTNPINEGDEKFFDENKS 687

[Close]
BLAST of Lag0017941 vs. NCBI nr
Match: KAA0052018.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 6.5e-28
Identity = 71/120 (59.17%), Postives = 89/120 (74.17%), Query Frame = 0 

Query: 1   MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKV 60
           +SM   +E NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+ NDQ +R++  LK 
Sbjct: 505 LSMATKKEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKTLKA 564

Query: 61  KLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNLIILTSPINEGSDQDHDKDKS 120
           K F E N+D K+HS +P HMKRK S+ INT+GSL VKP  II T+PINEG ++  D++KS
Sbjct: 565 KPFHEENDDDKIHSRVPSHMKRKLSVDINTKGSLTVKPRFIIFTNPINEGDEKILDENKS 624

The following BLAST results are available for this feature:
BLAST of Lag0017941 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040811.11.7e-2860.83retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK00108.12.2e-2860.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0044978.14.9e-2860.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK08944.16.5e-2859.17retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0052018.16.5e-2859.17retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of Lag0017941 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017941.1Lag0017941.1mRNA