Lag0017920 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017920
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RPM1-interacting protein 4-like
Location	chr5: 11696764 .. 11699038 (-)
RNA-Seq Expression	Lag0017920
Synteny	Lag0017920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTATGTCTTTCCTCTTTCCCTTCCCAAATCGATTTTCCCCTTCTCGATTCATCACGATTCCATTTTGTCCGATTCGATTTGATTCACTTATCTGTCTTGGGTTTTTCTTTCTATTGATTGTTGATCTTCCCATTTCATTGTTTCCAACATGATCCCCCCTTCCCCCTTTTCGTTCCTTTAGATTCACTGCGTTGATTGTTCGACGCCCTTTTTTCTTGGAGATTTGCTGATGCTTGTCATGGCTGGACTCTCTCCCCCATATATATATTTAAATGCTAATTCTTTGAGATTTGCAGGATTTGTTTTGTGATTTTTGTGAATCTACGTCTCTCTCTCTCTCTCTCTCGTTTGAATTTGTTCGACATGTTTCCTTCTTGTTTCCTCTTTAGTGTGAACAAATCGTAACCACTGGGACTGATAATTTTTGTTCTGTTTGCAGTTAATTTCCATGATCATGGGGATAATTCAATTTTTCTTACCAATTGATTGATGGGACTTGATTGATTAAGTATAGTATTTAGACAGAATTCTGATTGACAAAAGATATTTACAATTTAAATCAGCTGTAAAGAAATGTTGTTAGTTTTTCCCATATATTTTGTCTTTTTATCTCGTACTTGTTTTGTTTCGTCTGATTTCTGATTGCTGCTATTAATCATGGATTATTCTGTTTTTAGCTCATTAATGGAAGAGCAGTTTATCCTTCAACTTTTCACTTCAAAGTCCATGATCTATATATTTTGAGAGACTAAAGGTTCAAAAATTGAATCCTTGTTCATTATTCCATGTATGACTGCATTTGATCGACACAACTATGACTTGTAGCAAGGAAAATATTTTTGTTGGGTTAAATTATAAATTTAGTCTATAACTTTTAAAAAATTCTATTACATCATAAACTTTGAACTTGCTTTTGTTTAGTCATTGCCTTTGCATTATTAATAGAAAATTGATGTAGTATGCGTATTAGATAAATTTTGGTTGGGTTAGTGTGATGTGTTAAATAGGAAAATAGGTATGTTATGTAAGCATTCCATTAATGGTGTTAATGGTTAATGGTAGGGATTGGATAGAAGTATAATCAAAGTTCAGAAACATAATTATTTTGATGTTTAGAATAAAACAGACACTATGCTCTAAGTATGGACTGTATATAATGCAACCTTTCTTTGTTGACTTTTTATTTTATATTATATACACAAGTATGTTTATTTTAACAGGAGAAGGGTCAGCCACTACCGAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCAGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCCGAATCACCTAGAAAGGCGTCTCAGGCGAAACCAGATCCTGGCAAAGCTCAGAATGTAAGATGTTATAAACACAATTTCTTTTCTTTCTTTCCTTGACACCTGATACATACCTGTTCATTGTCCTATTTACGGGTTGTCCATGTACACATATGTTAGGAATACCATCAGGATAAGAAACATCATTAGGGTATTAAGGGTATAGTCATTGACCAAGGGATTGGTTAGAAATAGAGGGAATGGGAAGAGTAGAAGGTAGAGAATATTTTAGTTGGTTTAGGCTGAGTGAAAATACTTATGAGGGAAGGTTCCAATTAAGTACCTTGAATAGTTGGAGAGTCATTGTATATCTCAACATCATTTCAGTTCTTTGGTTTCTATCAAAATATTAACTCTTCTTCTAAGAAGTATCTTATAATTAACTTATCTAATTAAAAACTAGACTTCTGTGCTTGTTTGACCTTGGAAATGCATCAATTGAGTATCAAAATGCATTAATATTTTCATAGAAATGCAATAGATGATTTTGGACTTTGGATGATGCTGAAGCCCTATTTTTCTTTTCATCTATTTATTTTAATGGACTATCAATGACTGTAAATTGGGAAAAACGATCTATTTTGGCGATATCTCATTGGCACCATTTCTTTATGAGCTGTAACCCCTTTTGCTTCACATGGACGATTTTTCTGCTGTTCCAGAAGAAATGGTTTTGCTGCATTATGACCCCACCTACACAACCTTGATGGTAGTACCTGTCTGTAGATATAACCGGATTGCTCTGCGATCGTCTCCACTGGTTTTCGATAGAAGATGAGATTTTTAAAGCTGTGATCAGCCTACTATACTATTTGCTTCATAGTCTGAGTCATGGAGGAAAAGAGTTGAATTTTACGTGCTTTATTTGTGGTGCTGATGTGGTGAATTGTTAG

mRNA sequence

ATGTCGGAGAAGGGTCAGCCACTACCGAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCAGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCCGAATCACCTAGAAAGGCGTCTCAGGCGAAACCAGATCCTGGCAAAGCTCAGAATTACCTGTCTGTAGATATAACCGGATTGCTCTGCGATCGTCTCCACTGGTTTTCGATAGAAGATGAGATTTTTAAAGCTGTGATCAGCCTACTATACTATTTGCTTCATAGTCTGAGTCATGGAGGAAAAGAGTTGAATTTTACGTGCTTTATTTGTGGTGCTGATGTGGTGAATTGTTAG

Coding sequence (CDS)

ATGTCGGAGAAGGGTCAGCCACTACCGAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCAGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCCGAATCACCTAGAAAGGCGTCTCAGGCGAAACCAGATCCTGGCAAAGCTCAGAATTACCTGTCTGTAGATATAACCGGATTGCTCTGCGATCGTCTCCACTGGTTTTCGATAGAAGATGAGATTTTTAAAGCTGTGATCAGCCTACTATACTATTTGCTTCATAGTCTGAGTCATGGAGGAAAAGAGTTGAATTTTACGTGCTTTATTTGTGGTGCTGATGTGGTGAATTGTTAG

Protein sequence

MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPRKASQAKPDPGKAQNYLSVDITGLLCDRLHWFSIEDEIFKAVISLLYYLLHSLSHGGKELNFTCFICGADVVNC

Homology

[Close]

BLAST of Lag0017920 vs. NCBI nr
Match: XP_038905925.1 (protein NOI4-like [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-20
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPRKASQAK--PDPGKA 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESP KA QAK   DPGK 
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKHAADPGKP 60

[Close]

BLAST of Lag0017920 vs. NCBI nr
Match: XP_008449047.1 (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-20
Identity = 55/61 (90.16%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPRKASQAK--PDPGKA 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESP KA QAK   DPGK 
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60

[Close]

BLAST of Lag0017920 vs. NCBI nr
Match: XP_004148258.1 (protein NOI4 [Cucumis sativus] >KGN56031.1 hypothetical protein Csa_009963 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 6.4e-20
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPRKASQAK--PDPGKA 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESP KA +AK   DPGK 
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKP 60

[Close]

BLAST of Lag0017920 vs. NCBI nr
Match: KAA0065744.1 (RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK13768.1 RPM1-interacting protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-19
Identity = 53/59 (89.83%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPRKASQAK--PDPGKAQ 60
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESP KA QAK   DPGK Q
Sbjct: 2  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQ 60

[Close]

BLAST of Lag0017920 vs. NCBI nr
Match: KAG7028294.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.1 bits (261), Expect = 4.1e-19
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPRKASQAKP--DPGKA 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK+GGQPESP  A +AKP  DP K 
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKP 60

[Close]

BLAST of Lag0017920 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPRKASQAK-----PDP 60
          MS+KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SP K+S+        DP
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDP 60

[Close]

BLAST of Lag0017920 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 3   EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTG----GQPESPRKASQAKPD 55
           EK   +PKFG+WD NNP+SA+G+T IFNK R+E+ +G    G   +P   S   P+
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPN 198

The following BLAST results are available for this feature:

BLAST of Lag0017920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905925.1	2.2e-20	90.16	protein NOI4-like [Benincasa hispida]	[more]
XP_008449047.1	2.2e-20	90.16	PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]	[more]
XP_004148258.1	6.4e-20	88.52	protein NOI4 [Cucumis sativus] >KGN56031.1 hypothetical protein Csa_009963 [Cucu...	[more]
KAA0065744.1	3.2e-19	89.83	RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK13768.1 RPM1-inte...	[more]
KAG7028294.1	4.1e-19	85.25	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0017920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	3.6e-18	71.88	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	1.1e-06	46.43	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 3..38 e-value: 2.8E-23 score: 80.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..57
None	No IPR available	PANTHER	PTHR33159:SF59	RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED	coord: 2..49
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 2..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017920.1	Lag0017920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane