Lag0017891 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017891
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3
Locationchr5: 10965693 .. 10966723 (-)
RNA-Seq ExpressionLag0017891
SyntenyLag0017891
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGACATGTCTTGTCTTAAAAATGCAGAGGCCCTCATTTGTGCTCAAAATTGGATTCAATCTAAACCTCTTGATGACATGAGTGAAGAAATTGATGGAGCTGAAGAAATTGATGGAGCTGAAGAAATTGATGAAGGTAAGATTAATGAATGACATGTCTTGTCTTAAAAAAATGTTTATCACATTGTTTGCATTTTATCAAGTTAATTGTTTTTCTTTTTCTTGTGTCTAGAACTCACAAACATACGCAATGAGATGAAAGTTGCCTTTGAAAACTTGAGCGGTTCTAAATTTCTACTCTCAAATTTCATTTCTCTAGTTTATTTATATGATTTTAATTTTATACTGAATTTCAAGTAACAATTCTTGTTTTTGTTTTAGCCTCTTGAAATCTAACAATGGAGCTGGAGTTGTATCGAGAATCATGGCTTTCTGGGGTAAACTTGTTCATCCCTTGTATTCTCTTCACCATTTTATAAGAACTACTTGTTATAGAGATGAAAATAGTCCTCAAGTCTTGATTTGAGTTTAGAATGCTTATCATCTAAATACAATGGACCATTCTTTTTGGGGAGTGGAAGGTGCTGAAAAGAAAAGGGAAAAGACTGATTTTTATGAATATTTAGTGTTGAGATAATTAGTATTTCAGTTTTCTCTAAATAGGTTGGTGAAAGATTGCTTTTTTGTATCAGTCTTTCCAAGTATTTTACTTCAATCCAAGTTTTCAACATATAGAGTTGTGTTACTCTGGGGGTTATACTGCTGAAGTTACAAGCTTGTCACCACAGAGAATGATCTTTATGACTTTTTTTCTCATTGTGGCACTGTCGAGCATGTCGAAATCCTCAGGTGAATGAAACATAAATCTCTTGGCTTGATGGTTTGTTACAATTTGTAATCATATATATTTGGTTTGTTGTCTGGTGTATCAAGGAAACTTTGTTATAAGGCACATACAGGAGCAGTTCAAGGCGAAGTCTGGAAAATCTGAGGCATTCAATTATGCTTTACTTGTCTGGAAAATCTGA

mRNA sequence

ATGCATGACATGTCTTGTCTTAAAAATGCAGAGGCCCTCATTTGTGCTCAAAATTGGATTCAATCTAAACCTCTTGATGACATGAGTGAAGAAATTGATGGAGCTGAAGAAATTGATGGAGCTGAAGAAATTGATGAAGAGTTGTGTTACTCTGGGGGTTATACTGCTGAAGTTACAAGCTTGTCACCACAGAGAATGATCTTTATGACTTTTTTTCTCATTGTGGCACTGTCGAGCATGTCGAAATCCTCAGGAAACTTTGTTATAAGGCACATACAGGAGCAGTTCAAGGCGAAGTCTGGAAAATCTGAGGCATTCAATTATGCTTTACTTGTCTGGAAAATCTGA

Coding sequence (CDS)

ATGCATGACATGTCTTGTCTTAAAAATGCAGAGGCCCTCATTTGTGCTCAAAATTGGATTCAATCTAAACCTCTTGATGACATGAGTGAAGAAATTGATGGAGCTGAAGAAATTGATGGAGCTGAAGAAATTGATGAAGAGTTGTGTTACTCTGGGGGTTATACTGCTGAAGTTACAAGCTTGTCACCACAGAGAATGATCTTTATGACTTTTTTTCTCATTGTGGCACTGTCGAGCATGTCGAAATCCTCAGGAAACTTTGTTATAAGGCACATACAGGAGCAGTTCAAGGCGAAGTCTGGAAAATCTGAGGCATTCAATTATGCTTTACTTGTCTGGAAAATCTGA

Protein sequence

MHDMSCLKNAEALICAQNWIQSKPLDDMSEEIDGAEEIDGAEEIDEELCYSGGYTAEVTSLSPQRMIFMTFFLIVALSSMSKSSGNFVIRHIQEQFKAKSGKSEAFNYALLVWKI
Homology
[Close]
BLAST of Lag0017891 vs. NCBI nr
Match: KAA0038238.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa] >TYK30637.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 6.0e-07
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 8   KNAEALICAQNWIQSKPLDDMSEEIDGAEEIDGAEEID 46
           + AEALICAQNWIQSKPLDDM+EEIDGAEEID  +E++
Sbjct: 174 QTAEALICAQNWIQSKPLDDMTEEIDGAEEIDEGKEME 211

[Close]
BLAST of Lag0017891 vs. NCBI nr
Match: TYJ97768.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 8   KNAEALICAQNWIQSKPLDDMSEEIDGAEEID 40
           + AEALICAQNWIQSKPLDDM+EEIDGAEEID
Sbjct: 312 QTAEALICAQNWIQSKPLDDMTEEIDGAEEID 343

[Close]
BLAST of Lag0017891 vs. NCBI nr
Match: KAA0026183.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 8   KNAEALICAQNWIQSKPLDDMSEEIDGAEEID 40
           + AEALICAQNWIQSKPLDDM+EEIDGAEEID
Sbjct: 549 QTAEALICAQNWIQSKPLDDMTEEIDGAEEID 580

[Close]
BLAST of Lag0017891 vs. NCBI nr
Match: TYK09610.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 8   KNAEALICAQNWIQSKPLDDMSEEIDGAEEID 40
           + AEALICAQNWIQSKPLDDM+EEIDGAEEID
Sbjct: 319 QTAEALICAQNWIQSKPLDDMTEEIDGAEEID 350

[Close]
BLAST of Lag0017891 vs. NCBI nr
Match: ACX85638.1 (putative transposase [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 8   KNAEALICAQNWIQSKPLDDMSEEIDGAEEID 40
           + AEALICAQNWIQSKPLDDM+EEIDGAEEID
Sbjct: 639 QTAEALICAQNWIQSKPLDDMTEEIDGAEEID 670

The following BLAST results are available for this feature:
BLAST of Lag0017891 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038238.16.0e-0778.95zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis... [more]
TYJ97768.12.3e-0690.63putative transposase [Cucumis melo var. makuwa][more]
KAA0026183.12.3e-0690.63putative transposase [Cucumis melo var. makuwa][more]
TYK09610.12.3e-0690.63putative transposase [Cucumis melo var. makuwa][more]
ACX85638.12.3e-0690.63putative transposase [Cucumis melo][more]
BLAST of Lag0017891 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017891.1Lag0017891.1mRNA