Lag0017862 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017862
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	flowering locus K homology domain-like
Location	chr5: 10309124 .. 10309661 (-)
RNA-Seq Expression	Lag0017862
Synteny	Lag0017862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTAAAGTCTCAACGAGACTACTAGCGGTAGCTTCACAAGCGAGAAGTTTGATTAGGAAGCAGGGAAGGACTGTTACATCCATTCAAGAAGAGTCAAATTGTATAGTTAGAGTTCTTCGAACAGGTGACTTCTCTAGATGCATTTGATTCTCTGCTTTATTGTTTCTATATTTGTCAATAGAAACATGTCTTTATTTGCCATCTACTTCATTTGTTTCTGAATTGATAATTATATACTCCATTTTGGTTTTTCCTTTTCAATGCATCATCCTTACCTAATGTCATCTAGGAATTTGCTGTAGAAGATTTACCTGTTTTTGCTCTCCAAGACGAGAGTTGTTGAAGTACTAGGTGATCCAAATGGCTTGCCCAAGGTCCACCTGGTGATGTGCCATCGGTTATGGATAAGCAACCTCATCATGGAATTTCTGCTTATGGAAGGGAGGCTCTGATGGGTGTTCATCCTGAAAGGAATAAAAGTCCCCACGCAGCGGAAGCGCATCGATTGGACCTTACGCCATATATTAATTAA

mRNA sequence

ATGGCAAGTAAAGTCTCAACGAGACTACTAGCGGTAGCTTCACAAGCGAGAAGTTTGATTAGGAAGCAGGGAAGGACTGTTACATCCATTCAAGAAGAGTCAAATTGTATAGTTAGAGTTCTTCGAACAGGTCCACCTGGTGATGTGCCATCGGTTATGGATAAGCAACCTCATCATGGAATTTCTGCTTATGGAAGGGAGGCTCTGATGGGTGTTCATCCTGAAAGGAATAAAAGTCCCCACGCAGCGGAAGCGCATCGATTGGACCTTACGCCATATATTAATTAA

Coding sequence (CDS)

ATGGCAAGTAAAGTCTCAACGAGACTACTAGCGGTAGCTTCACAAGCGAGAAGTTTGATTAGGAAGCAGGGAAGGACTGTTACATCCATTCAAGAAGAGTCAAATTGTATAGTTAGAGTTCTTCGAACAGGTCCACCTGGTGATGTGCCATCGGTTATGGATAAGCAACCTCATCATGGAATTTCTGCTTATGGAAGGGAGGCTCTGATGGGTGTTCATCCTGAAAGGAATAAAAGTCCCCACGCAGCGGAAGCGCATCGATTGGACCTTACGCCATATATTAATTAA

Protein sequence

MASKVSTRLLAVASQARSLIRKQGRTVTSIQEESNCIVRVLRTGPPGDVPSVMDKQPHHGISAYGREALMGVHPERNKSPHAAEAHRLDLTPYIN

Homology

[Close]

BLAST of Lag0017862 vs. NCBI nr
Match: KAG7021167.1 (Flowering locus K-likey domain protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 8.1e-10
Identity = 60/177 (33.90%), Postives = 63/177 (35.59%), Query Frame = 0


Query: 1   MASKVSTRLLAVASQARSLIRKQGRTVTSIQEESNCIVRVLRTG---------------- 60
           M  KVSTRLL  ASQA SLI KQG TV SIQEESNCIVRVL +                 
Sbjct: 177 MGGKVSTRLLVAASQAGSLIGKQGGTVKSIQEESNCIVRVLGSEDLPVFALQDDRVVEVL 236

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 237 GDPAGVHKAVELIASHLRKFLVDRSIIPVFEMNMQMTNQQMEHMPPPHQSWGPPQGMPPN 296

[Close]

BLAST of Lag0017862 vs. NCBI nr
Match: KAG6586320.1 (Flowering locus K-likey domain protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 8.1e-10
Identity = 60/177 (33.90%), Postives = 63/177 (35.59%), Query Frame = 0


Query: 1   MASKVSTRLLAVASQARSLIRKQGRTVTSIQEESNCIVRVLRTG---------------- 60
           M  KVSTRLL  ASQA SLI KQG TV SIQEESNCIVRVL +                 
Sbjct: 233 MGGKVSTRLLVAASQAGSLIGKQGGTVKSIQEESNCIVRVLGSEDLPVFALQDDRVVEVL 292

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 293 GDPAGVHKAVELIASHLRKFLVDRSIIPVFEMNMQMTNQQMEHMPPPHQSWGPPQGMPPN 352

[Close]

BLAST of Lag0017862 vs. NCBI nr
Match: XP_023538035.1 (flowering locus K homology domain-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.9 bits (180), Expect = 8.1e-10
Identity = 60/177 (33.90%), Postives = 63/177 (35.59%), Query Frame = 0


Query: 1   MASKVSTRLLAVASQARSLIRKQGRTVTSIQEESNCIVRVLRTG---------------- 60
           M  KVSTRLL  ASQA SLI KQG TV SIQEESNCIVRVL +                 
Sbjct: 177 MGGKVSTRLLVAASQAGSLIGKQGGTVKSIQEESNCIVRVLGSEDLPVFALQDDRVVEVL 236

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 237 GDPAGVHKAVELIASHLRKFLVDRSIIPVFEMNMQMTNQQMEHMPPPHQSWGPPQGMPPN 296

[Close]

BLAST of Lag0017862 vs. NCBI nr
Match: XP_022937898.1 (flowering locus K homology domain-like [Cucurbita moschata])

HSP 1 Score: 73.9 bits (180), Expect = 8.1e-10
Identity = 60/177 (33.90%), Postives = 63/177 (35.59%), Query Frame = 0


Query: 1   MASKVSTRLLAVASQARSLIRKQGRTVTSIQEESNCIVRVLRTG---------------- 60
           M  KVSTRLL  ASQA SLI KQG TV SIQEESNCIVRVL +                 
Sbjct: 177 MGGKVSTRLLVAASQAGSLIGKQGGTVKSIQEESNCIVRVLGSEDLPVFALQDDRVVEVL 236

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 237 GDPAGVHKAVELIASHLRKFLVDRSIIPVFEMNMQMTNQQMEHMPPPHQSWGPPQGMPPN 296

[Close]

BLAST of Lag0017862 vs. NCBI nr
Match: XP_022965693.1 (flowering locus K homology domain-like [Cucurbita maxima])

HSP 1 Score: 73.9 bits (180), Expect = 8.1e-10
Identity = 60/177 (33.90%), Postives = 63/177 (35.59%), Query Frame = 0


Query: 1   MASKVSTRLLAVASQARSLIRKQGRTVTSIQEESNCIVRVLRTG---------------- 60
           M  KVSTRLL  ASQA SLI KQG TV SIQEESNCIVRVL +                 
Sbjct: 177 MGGKVSTRLLVAASQAGSLIGKQGGTVKSIQEESNCIVRVLGSEDLPVFALQDDRVVEVL 236

Query: 61  ------------------------------------------------------------ 78
                                                                       
Sbjct: 237 GDPAGVHKAVELIASHLRKFLVDRSIIPVFEMNMQMTNQQMEHMPPPHQSWGPPQGMPPN 296

[Close]

BLAST of Lag0017862 vs. ExPASy Swiss-Prot
Match: Q9SR13 (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.7e-06
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 3   SKVSTRLLAVASQARSLIRKQGRTVTSIQEESNCIVRVL 42
           SKVSTRLL  ASQA SLI KQG TV +IQE S CIVRVL
Sbjct: 275 SKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVL 313

The following BLAST results are available for this feature:

BLAST of Lag0017862 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021167.1	8.1e-10	33.90	Flowering locus K-likey domain protein [Cucurbita argyrosperma subsp. argyrosper...	[more]
KAG6586320.1	8.1e-10	33.90	Flowering locus K-likey domain protein, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023538035.1	8.1e-10	33.90	flowering locus K homology domain-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937898.1	8.1e-10	33.90	flowering locus K homology domain-like [Cucurbita moschata]	[more]
XP_022965693.1	8.1e-10	33.90	flowering locus K homology domain-like [Cucurbita maxima]	[more]

BLAST of Lag0017862 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SR13	9.7e-06	76.92	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 13..47 e-value: 3.3E-5 score: 23.6
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 1..71 e-value: 1.9E-6 score: 29.5
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 4..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017862.1	Lag0017862.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding