Lag0017804 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017804
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionChaperone DnaJ domain protein
Locationchr5: 9173663 .. 9175068 (+)
RNA-Seq ExpressionLag0017804
SyntenyLag0017804
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATACCATTTCCCCATTACTTTTACAGTTTTATGGTATAATCCTTTATTGTAAAGGAAGACTGGAAGAGGAAAATTTGTATTATGTTCTTCAACTTGATGTATTTTGGGATCATTTAGTAGCATCCAGATCTTGCCATTCCTTCCTTCCTGTTTCATAGAAAGGATGAGAAAGAGAGATAATTTTTTGGCCATGATTATATGATTGCTATTATGGCTTGGCTTTTCAGTCTTACAATTGATCTAGATCTTGCAATGTCTTCCCTCCTGTTTCATAGAAAGGATGGAGAAAGAGGAATAACTTTCTGGCCATGATTATACTATATGATTGCTATTATGGCTTCTCTTTGCAGTATTGCAATTGGAGATCGAACTATTCGGGATCTTTTATCAGATTCTAGTGATGATTATATCCATGAAGGATGCTTACCATTTTTCACCTTTTAGATTTTCTCTATTAAAAGGTTACAACTGAATAATAAGCATCTAAGGCAACTTTTGCTCCTGTTGTTTGCATTGTAGCTAAAGGAACAACTGGAGATATGAACTAAAAGATTTGAAGAACTTAGAAAAGAGGTCTGTTTCTACATATAGTTATCCAACGAGTGCGTTGATGATTATTTTTCTTATCAGAAGAGAGAGATGGTCGTTTGGAAATGGTTGGCAAAATTTGATATCTTGTTATATCTGTGTTCTATTGTAGGTGGATAAGCAATGCGTCCACTTTTTTGGTGTGACAATTAATGAGGAGCAAGCTGAGACAGGAATTGTTATAAGGGTTACTTCAACTGCACAAAGTAAATTCAAGGTGTAGTTTTGCCAGTAATTTCAACCAAATGGGGCTCTTTTAGTTCTGATATGTACATTTGTTTTCTTGAGGGCCTTGTTCTCCATGTGCATCCACTTTGTTAAGCTGTTTCATGTTTCTGATTTCTATGCTTATCCTTTTTTATTACAGTTGCTCTTTTTTGAACAAGATGGCAATGACGGTTATAGTTTGGCCTTACAGGTATTACCTTTCAAAGTGTATATGTATTTTTCCCCATTTGTTAATGGATTTAGATGAGGTATCTTCTCCTGTTGGATGGCAATGGCATTATAACTCTAGCATTTTCTTGAATATAATCAATTTTTGGAAGAAGCTCTTTGTCAAAAACTAAGCTCTTTGTCAAAAACGAAGCTCTTTGTCGTTGATCGAAACCTCAAATCCATCACAGCTCCGGCGGTGACGACCTCTGAACAACACCTCCGATGACCTTGTGCAACGACCCACGGATCTAGACCCATCTCTGTGCGTGGTTCAGACTTCCAGCGGGCTTCAACTCCGATTTTCCTCCTCTTCAGCAAGGATTATCACTTGCTCGTTCGAATTCCTCAAGGAGTTTAGTTATGCAATTGTTTGA

mRNA sequence

ATGTACATACCATTTCCCCATTACTTTTACAGTTTTATGGTGGATAAGCAATGCGTCCACTTTTTTGGTGTGACAATTAATGAGGAGCAAGCTGAGACAGGAATTGTTATAAGGGTTACTTCAACTGCACAAAGTAAATTCAAGTTGCTCTTTTTTGAACAAGATGGCAATGACGGTTATAGTTTGGCCTTACAGACTTCCAGCGGGCTTCAACTCCGATTTTCCTCCTCTTCAGCAAGGATTATCACTTGCTCGTTCGAATTCCTCAAGGAGTTTAGTTATGCAATTGTTTGA

Coding sequence (CDS)

ATGTACATACCATTTCCCCATTACTTTTACAGTTTTATGGTGGATAAGCAATGCGTCCACTTTTTTGGTGTGACAATTAATGAGGAGCAAGCTGAGACAGGAATTGTTATAAGGGTTACTTCAACTGCACAAAGTAAATTCAAGTTGCTCTTTTTTGAACAAGATGGCAATGACGGTTATAGTTTGGCCTTACAGACTTCCAGCGGGCTTCAACTCCGATTTTCCTCCTCTTCAGCAAGGATTATCACTTGCTCGTTCGAATTCCTCAAGGAGTTTAGTTATGCAATTGTTTGA

Protein sequence

MYIPFPHYFYSFMVDKQCVHFFGVTINEEQAETGIVIRVTSTAQSKFKLLFFEQDGNDGYSLALQTSSGLQLRFSSSSARIITCSFEFLKEFSYAIV
Homology
[Close]
BLAST of Lag0017804 vs. NCBI nr
Match: XP_004147113.1 (chaperone protein dnaJ 15 isoform X1 [Cucumis sativus] >XP_011655485.1 chaperone protein dnaJ 15 isoform X1 [Cucumis sativus] >XP_031741568.1 chaperone protein dnaJ 15 isoform X1 [Cucumis sativus] >KAE8648618.1 hypothetical protein Csa_009335 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 14  VDKQCVHFFGVTINEEQAETGIVIRVTSTAQSKFKLLFFEQDGNDGYSLALQTSS 69
           VDKQC HFFGVTINEEQA+TGIVIRVTSTAQSKFKLLFFEQD N GYSLALQ  S
Sbjct: 151 VDKQCAHFFGVTINEEQAQTGIVIRVTSTAQSKFKLLFFEQDINGGYSLALQEDS 205

[Close]
BLAST of Lag0017804 vs. NCBI nr
Match: XP_031741569.1 (chaperone protein dnaJ 15 isoform X2 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 14  VDKQCVHFFGVTINEEQAETGIVIRVTSTAQSKFKLLFFEQDGNDGYSLALQTSS 69
           VDKQC HFFGVTINEEQA+TGIVIRVTSTAQSKFKLLFFEQD N GYSLALQ  S
Sbjct: 115 VDKQCAHFFGVTINEEQAQTGIVIRVTSTAQSKFKLLFFEQDINGGYSLALQEDS 169

[Close]
BLAST of Lag0017804 vs. NCBI nr
Match: XP_022152257.1 (chaperone protein dnaJ 15-like isoform X1 [Momordica charantia] >XP_022152258.1 chaperone protein dnaJ 15-like isoform X1 [Momordica charantia] >XP_022152259.1 chaperone protein dnaJ 15-like isoform X1 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-17
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 14  VDKQCVHFFGVTINEEQAETGIVIRVTSTAQSKFKLLFFEQDGNDGYSLALQTSS 69
           VDKQC HFFGVTINEEQA+ GIVIRVTSTAQSKFKLLFFEQD N GYSLALQ  S
Sbjct: 151 VDKQCAHFFGVTINEEQAQAGIVIRVTSTAQSKFKLLFFEQDFNGGYSLALQEDS 205

[Close]
BLAST of Lag0017804 vs. NCBI nr
Match: XP_022152260.1 (chaperone protein dnaJ 15-like isoform X2 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-17
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 14  VDKQCVHFFGVTINEEQAETGIVIRVTSTAQSKFKLLFFEQDGNDGYSLALQTSS 69
           VDKQC HFFGVTINEEQA+ GIVIRVTSTAQSKFKLLFFEQD N GYSLALQ  S
Sbjct: 151 VDKQCAHFFGVTINEEQAQAGIVIRVTSTAQSKFKLLFFEQDFNGGYSLALQEDS 205

[Close]
BLAST of Lag0017804 vs. NCBI nr
Match: XP_038874668.1 (chaperone protein dnaJ 15-like [Benincasa hispida] >XP_038874669.1 chaperone protein dnaJ 15-like [Benincasa hispida] >XP_038874670.1 chaperone protein dnaJ 15-like [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-17
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 14  VDKQCVHFFGVTINEEQAETGIVIRVTSTAQSKFKLLFFEQDGNDGYSLALQTSS 69
           VDKQC HFFGVTINEEQA+ GIVIRVTSTAQSKFKLLFFEQD N GYSLALQ  S
Sbjct: 151 VDKQCAHFFGVTINEEQAQAGIVIRVTSTAQSKFKLLFFEQDVNGGYSLALQEDS 205

[Close]
BLAST of Lag0017804 vs. ExPASy Swiss-Prot
Match: Q9ZSY2 (Chaperone protein dnaJ 15 OS=Arabidopsis thaliana OX=3702 GN=ATJ15 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-17
Identity = 40/52 (76.92%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 14  VDKQCVHFFGVTINEEQAETGIVIRVTSTAQSKFKLLFFEQDGNDGYSLALQ 66
           V+KQC HFFGVTI+E+QAE+G+V+RVTSTAQSKFKLL+FEQD + GY LALQ
Sbjct: 150 VEKQCAHFFGVTISEQQAESGVVVRVTSTAQSKFKLLYFEQDSSGGYGLALQ 201

[Close]
BLAST of Lag0017804 vs. ExPASy Swiss-Prot
Match: Q8VXV4 (Chaperone protein dnaJ 16 OS=Arabidopsis thaliana OX=3702 GN=ATJ16 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-12
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 14  VDKQCVHFFGVTINEEQAETGIVIRVTSTAQSKFKLLFFEQDGNDGYSLALQTSS 69
           V+KQC HF+ VTI+EE+   G+V RV S+++SKFKLL+F+Q+ N G SLALQ  S
Sbjct: 153 VEKQCAHFYAVTISEEEVSAGLVCRVESSSKSKFKLLYFDQEANSGLSLALQEDS 207

[Close]
BLAST of Lag0017804 vs. ExPASy Swiss-Prot
Match: Q6XL73 (Chaperone protein dnaJ 39 OS=Arabidopsis thaliana OX=3702 GN=ATJ39 PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 8.6e-10
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 14  VDKQCVHFFGVTINEEQAETGIVIRVTSTAQSKFKLLFFEQDGNDGYSLALQTSS 69
           V+KQ  HF+ VT+ EE+A+ G++ +V S+A++KFKLL+F+Q  N G SLALQ  S
Sbjct: 156 VEKQSAHFYSVTLTEEEAQDGLICKVHSSAKNKFKLLYFDQVENGGLSLALQEDS 210

The following BLAST results are available for this feature:
BLAST of Lag0017804 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147113.12.4e-1789.09chaperone protein dnaJ 15 isoform X1 [Cucumis sativus] >XP_011655485.1 chaperone... [more]
XP_031741569.12.4e-1789.09chaperone protein dnaJ 15 isoform X2 [Cucumis sativus][more]
XP_022152257.17.0e-1787.27chaperone protein dnaJ 15-like isoform X1 [Momordica charantia] >XP_022152258.1 ... [more]
XP_022152260.17.0e-1787.27chaperone protein dnaJ 15-like isoform X2 [Momordica charantia][more]
XP_038874668.17.0e-1787.27chaperone protein dnaJ 15-like [Benincasa hispida] >XP_038874669.1 chaperone pro... [more]
BLAST of Lag0017804 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZSY22.5e-1776.92Chaperone protein dnaJ 15 OS=Arabidopsis thaliana OX=3702 GN=ATJ15 PE=1 SV=1[more]
Q8VXV43.2e-1258.18Chaperone protein dnaJ 16 OS=Arabidopsis thaliana OX=3702 GN=ATJ16 PE=2 SV=1[more]
Q6XL738.6e-1052.73Chaperone protein dnaJ 39 OS=Arabidopsis thaliana OX=3702 GN=ATJ39 PE=2 SV=2[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR44272DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)coord: 11..73
NoneNo IPR availablePANTHERPTHR44272:SF9BNAA02G13770D PROTEINcoord: 11..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017804.1Lag0017804.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane