Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAAAACAACTTCACGAACTGAAAGAAAAAGTGAGAAGTATGCTTGCAGTTGCTGAAAAACCTTCAGAAAAACTAGGTTTAATTGATTCAATCCAACGGTTAGGTTTGTCATACCATTTTGAAGGGGAAATTACTGAAATTCTTCACCACTTCCAAAATCCTTGCAATGTTGATGATATCAATGATGAGAATCTTTACGTTATAGCTCTTAGATTTCGATTGCTTAGACAACAAGGTTATCATGTTTCATGCGGTGAGTCTTACGAAAAATTTTTTGTAAATAAAAATGCTAAATTATCATGTTATCATGTTGTAATTTGACCTCTGTAAATTTCAATCAGAGATATTCAATAAGTTTACCAATGAAAAAGGAGATTTGAAAGAATCAGTTGCTAAGGATGAAAGTGGTATATTAAATTTGTATGAGGCATCCCACTTGAGAATGAAGGGAGAAAATATATTGGATGAAGCATTGGCTTTCTCAACTATTCATCTTCAAGCATTGGTCATGGATTACAAGTCTCCTTTCTCAGATGAAGCTAAATATGCATTGAAGTGGCCAATCTATAAAGATTTGCCAAGGTTCATGACTTGGCACTATATCTCTCTTTATCACAACTGTTATAGGTGA
mRNA sequence
ATGGTGAGAAAACAACTTCACGAACTGAAAGAAAAAGTGAGAAGTATGCTTGCAGTTGCTGAAAAACCTTCAGAAAAACTAGGTTTAATTGATTCAATCCAACGGTTAGGTTTGTCATACCATTTTGAAGGGGAAATTACTGAAATTCTTCACCACTTCCAAAATCCTTGCAATGTTGATGATATCAATGATGAGAATCTTTACGTTATAGCTCTTAGATTTCGATTGCTTAGACAACAAGGTTATCATGTTTCATGCGAGATATTCAATAAGTTTACCAATGAAAAAGGAGATTTGAAAGAATCAGTTGCTAAGGATGAAAGTGGTATATTAAATTTGTATGAGGCATCCCACTTGAGAATGAAGGGAGAAAATATATTGGATGAAGCATTGGCTTTCTCAACTATTCATCTTCAAGCATTGGTCATGGATTACAAGTCTCCTTTCTCAGATGAAGCTAAATATGCATTGAAGTGGCCAATCTATAAAGATTTGCCAAGGTTCATGACTTGGCACTATATCTCTCTTTATCACAACTGTTATAGGTGA
Coding sequence (CDS)
ATGGTGAGAAAACAACTTCACGAACTGAAAGAAAAAGTGAGAAGTATGCTTGCAGTTGCTGAAAAACCTTCAGAAAAACTAGGTTTAATTGATTCAATCCAACGGTTAGGTTTGTCATACCATTTTGAAGGGGAAATTACTGAAATTCTTCACCACTTCCAAAATCCTTGCAATGTTGATGATATCAATGATGAGAATCTTTACGTTATAGCTCTTAGATTTCGATTGCTTAGACAACAAGGTTATCATGTTTCATGCGAGATATTCAATAAGTTTACCAATGAAAAAGGAGATTTGAAAGAATCAGTTGCTAAGGATGAAAGTGGTATATTAAATTTGTATGAGGCATCCCACTTGAGAATGAAGGGAGAAAATATATTGGATGAAGCATTGGCTTTCTCAACTATTCATCTTCAAGCATTGGTCATGGATTACAAGTCTCCTTTCTCAGATGAAGCTAAATATGCATTGAAGTGGCCAATCTATAAAGATTTGCCAAGGTTCATGACTTGGCACTATATCTCTCTTTATCACAACTGTTATAGGTGA
Protein sequence
MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVDDINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLRMKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLYHNCYR
Homology
BLAST of Lag0017773 vs. NCBI nr
Match:
XP_022143530.1 (valencene synthase-like isoform X2 [Momordica charantia])
HSP 1 Score: 262.7 bits (670), Expect = 2.4e-66
Identity = 133/178 (74.72%), Postives = 149/178 (83.71%), Query Frame = 0
Query: 1 MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQN-PCNV 60
MVRKQL E +E+VR ML AEK SEKL LIDSIQRLG+SYHFEGEI EIL H QN CN+
Sbjct: 44 MVRKQLEEQREEVRRMLEAAEKCSEKLSLIDSIQRLGISYHFEGEINEILEHMQNDSCNL 103
Query: 61 DDINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHL 120
DD DE++Y++ALRFRLLRQQGY VSCEIFN+FTN GD KE++ KDE GIL+LYEASHL
Sbjct: 104 DD--DEDIYIVALRFRLLRQQGYSVSCEIFNRFTNGDGDFKETMLKDECGILSLYEASHL 163
Query: 121 RMKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
RM GENILD+ALAF+T HLQA+ M SPFS+EAKYALKWPIYK LPRF T HYISLY
Sbjct: 164 RMNGENILDKALAFTTTHLQAMAMSSSSPFSEEAKYALKWPIYKALPRFTTRHYISLY 219
BLAST of Lag0017773 vs. NCBI nr
Match:
XP_022143529.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])
HSP 1 Score: 262.7 bits (670), Expect = 2.4e-66
Identity = 133/178 (74.72%), Postives = 149/178 (83.71%), Query Frame = 0
Query: 1 MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQN-PCNV 60
MVRKQL E +E+VR ML AEK SEKL LIDSIQRLG+SYHFEGEI EIL H QN CN+
Sbjct: 44 MVRKQLEEQREEVRRMLEAAEKCSEKLSLIDSIQRLGISYHFEGEINEILEHMQNDSCNL 103
Query: 61 DDINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHL 120
DD DE++Y++ALRFRLLRQQGY VSCEIFN+FTN GD KE++ KDE GIL+LYEASHL
Sbjct: 104 DD--DEDIYIVALRFRLLRQQGYSVSCEIFNRFTNGDGDFKETMLKDECGILSLYEASHL 163
Query: 121 RMKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
RM GENILD+ALAF+T HLQA+ M SPFS+EAKYALKWPIYK LPRF T HYISLY
Sbjct: 164 RMNGENILDKALAFTTTHLQAMAMSSSSPFSEEAKYALKWPIYKALPRFTTRHYISLY 219
BLAST of Lag0017773 vs. NCBI nr
Match:
XP_031738277.1 ((-)-germacrene D synthase isoform X2 [Cucumis sativus])
HSP 1 Score: 260.8 bits (665), Expect = 9.0e-66
Identity = 129/179 (72.07%), Postives = 150/179 (83.80%), Query Frame = 0
Query: 1 MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVD 60
M+RK+L ELKE+VRSM K S+KL LIDSIQRLGLSYHF+ EI E+L +NPCNVD
Sbjct: 57 MIRKKLQELKEEVRSMFVTTNKFSKKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCNVD 116
Query: 61 DINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLR 120
D E+LY+ ALRFRLLRQQG+ VSCEIFNKFTNE+G+LKES+ KDE+G+L+LYEASHLR
Sbjct: 117 D-EHEDLYITALRFRLLRQQGFFVSCEIFNKFTNERGELKESIRKDENGLLSLYEASHLR 176
Query: 121 MKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLYHN 180
MKGENILDEALAF+T HL+A+ MD SPF +EAKYALKWPIYK + RFM HYISLY N
Sbjct: 177 MKGENILDEALAFTTTHLKAMAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSN 234
BLAST of Lag0017773 vs. NCBI nr
Match:
XP_038877743.1 (LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida])
HSP 1 Score: 256.9 bits (655), Expect = 1.3e-64
Identity = 127/179 (70.95%), Postives = 148/179 (82.68%), Query Frame = 0
Query: 1 MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVD 60
MV KQ+ E KE+VR M VAEK SEKL LIDSIQRLGLSYHF+ E +E++ + QNP NVD
Sbjct: 51 MVMKQVQEYKEEVRRMFGVAEKYSEKLSLIDSIQRLGLSYHFKDESSEVIDYIQNPTNVD 110
Query: 61 DINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLR 120
+ DE+LY+ ALRFRLLRQQG+ VSC+IFNKFTNE GD KES+ KD +G ++LYEASHLR
Sbjct: 111 E-EDEDLYITALRFRLLRQQGFFVSCDIFNKFTNEMGDFKESIVKDGAGXISLYEASHLR 170
Query: 121 MKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLYHN 180
MKGENILDEALAF+T L+A+ MD SPFS+EAKYALKWPIYK +PRFM HYISLY N
Sbjct: 171 MKGENILDEALAFTTTQLKAMAMDSSSPFSEEAKYALKWPIYKAMPRFMNRHYISLYQN 228
BLAST of Lag0017773 vs. NCBI nr
Match:
XP_022143526.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])
HSP 1 Score: 255.8 bits (652), Expect = 2.9e-64
Identity = 129/178 (72.47%), Postives = 147/178 (82.58%), Query Frame = 0
Query: 1 MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQN-PCNV 60
+VRKQL E KE VR M+ A+K SEKL LIDSIQRLGLSYHFEGEI EIL H QN CN+
Sbjct: 49 VVRKQLEEQKEGVRRMVEAADKCSEKLSLIDSIQRLGLSYHFEGEINEILEHMQNDSCNL 108
Query: 61 DDINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHL 120
DD DE++Y++ALRFRLLRQQGY VSCEIFN+FT E GD KES+ KDE GIL+LY+ASHL
Sbjct: 109 DD--DEDIYIVALRFRLLRQQGYSVSCEIFNRFTTENGDFKESMVKDECGILSLYQASHL 168
Query: 121 RMKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
M GENILD+ALAF+T HLQA+ MD SPF++EAKYALKWPIYK +PR T HYISLY
Sbjct: 169 GMNGENILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPIYKAMPRXTTRHYISLY 224
BLAST of Lag0017773 vs. ExPASy Swiss-Prot
Match:
Q6Q3H3 ((-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 1.7e-43
Identity = 90/177 (50.85%), Postives = 127/177 (71.75%), Query Frame = 0
Query: 2 VRKQLHELKEKVRSMLAVAEKPS-EKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVD 61
+++ + +LKE+VR ML A+ S +KL LID+IQRLG++YHFE EI E+L H + V
Sbjct: 50 LKQHVQQLKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDGSVVS 109
Query: 62 DINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLR 121
+E++Y +LRFRLLRQQGYHVSC++FN F + +G+ KES++ D G+L+LYEA+H R
Sbjct: 110 --AEEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFR 169
Query: 122 MKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
+ GE+ILDEALAF+T HLQ+ +P +++ +ALK PI K LPR HY S+Y
Sbjct: 170 VHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVY 224
BLAST of Lag0017773 vs. ExPASy Swiss-Prot
Match:
B9SBV6 (Probable terpene synthase 3 OS=Ricinus communis OX=3988 GN=TPS3 PE=3 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 5.2e-40
Identity = 88/176 (50.00%), Postives = 123/176 (69.89%), Query Frame = 0
Query: 3 RKQLHELKEKVRSM-LAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVDD 62
++Q L+E+VR M ++ +KPS KL LID IQRLG++YHFE EI E++ + N DD
Sbjct: 43 KEQAKVLEEEVRRMIISETQKPSGKLKLIDVIQRLGIAYHFEEEIGEVIEQVYS--NYDD 102
Query: 63 INDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLRM 122
DE+LY IALRFRLLRQQGY+VS ++F+KF + KGD K+ + D G+L+L+EAS++ +
Sbjct: 103 --DEDLYDIALRFRLLRQQGYNVSSDVFDKFKDCKGDFKKHLVNDVQGLLSLHEASYMSV 162
Query: 123 KGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
+GE ILDEAL F+ HL A + SP D+ +AL+WP+ + LPR W Y S+Y
Sbjct: 163 QGEKILDEALEFTKTHLMATQL--SSPLPDQVSHALRWPVRRGLPRKEAWQYFSIY 212
BLAST of Lag0017773 vs. ExPASy Swiss-Prot
Match:
B9SCB6 (Probable terpene synthase 2 OS=Ricinus communis OX=3988 GN=TPS2 PE=3 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 7.4e-39
Identity = 81/176 (46.02%), Postives = 121/176 (68.75%), Query Frame = 0
Query: 2 VRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVDD 61
+ +Q+ LKE+V+ M+A A++PS+ L LID +QRLG+SYHFE EI E L N N D
Sbjct: 45 MEQQVERLKEEVKKMIASADEPSQILNLIDLLQRLGVSYHFEKEIEEALQQVLN-MNSDS 104
Query: 62 INDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLRM 121
D++L+ +ALRFRLLR+QG +VSC++FNKF + G +++ D G+L+LYEA+H R+
Sbjct: 105 DKDDDLHSVALRFRLLREQGLNVSCDVFNKFRDRNGHFIQTLKTDLQGMLSLYEAAHFRV 164
Query: 122 KGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
GE ILD+ALAF+T +L+++V + P + + L+ P+ K L R H+IS+Y
Sbjct: 165 HGEGILDDALAFTTTYLESIVPNLSPPLAAQISRTLRQPLRKSLARVEARHFISIY 219
BLAST of Lag0017773 vs. ExPASy Swiss-Prot
Match:
Q6Q3H2 (Valencene synthase OS=Vitis vinifera OX=29760 GN=ValCS PE=1 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 1.7e-38
Identity = 86/178 (48.31%), Postives = 120/178 (67.42%), Query Frame = 0
Query: 4 KQLHELKEKVRSML--AVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVDD 63
+Q+ +LK++V+ L A PS+ L ID++QRLG++YHFE EI E L H N + +
Sbjct: 49 EQIEDLKKEVKRKLTAAAVANPSQLLNFIDAVQRLGVAYHFEQEIEEALQHICNSFHDCN 108
Query: 64 INDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLRM 123
D +LY IAL FRLLRQQGY +SC+IFNKFT+E+G KE++ D G+L LYEA+HLR+
Sbjct: 109 DMDGDLYNIALGFRLLRQQGYTISCDIFNKFTDERGRFKEALISDVRGMLGLYEAAHLRV 168
Query: 124 KGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLYHN 180
GE+IL +ALAF+T HL+A+V +++ +AL PI K L R YIS+Y +
Sbjct: 169 HGEDILAKALAFTTTHLKAMVESLGYHLAEQVAHALNRPIRKGLERLEARWYISVYQD 226
BLAST of Lag0017773 vs. ExPASy Swiss-Prot
Match:
O49853 ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum OX=29729 GN=CAD1-C2 PE=2 SV=1)
HSP 1 Score: 159.8 bits (403), Expect = 2.8e-38
Identity = 86/177 (48.59%), Postives = 119/177 (67.23%), Query Frame = 0
Query: 4 KQLHELKEKVRSML-AVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVDDI 63
K+ +LKE+VR M+ A ++KL IDS+QRLG+SYHF EI + L + + N D
Sbjct: 50 KRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN-NNDAE 109
Query: 64 NDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLRMK 123
ND LY +LRFRLLR+ GY+VSC++FNKF +E+G+ K SV D G+L LY+AS+LR+
Sbjct: 110 ND--LYTTSLRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVQGLLELYQASYLRVH 169
Query: 124 GENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLYHN 180
GE+ILDEA++F+T HL V P S+E +ALK I + LPR HY+S+Y +
Sbjct: 170 GEDILDEAISFTTNHLSLAVSSLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQD 223
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022143530.1 | 2.4e-66 | 74.72 | valencene synthase-like isoform X2 [Momordica charantia] | [more] |
XP_022143529.1 | 2.4e-66 | 74.72 | (-)-germacrene D synthase-like isoform X1 [Momordica charantia] | [more] |
XP_031738277.1 | 9.0e-66 | 72.07 | (-)-germacrene D synthase isoform X2 [Cucumis sativus] | [more] |
XP_038877743.1 | 1.3e-64 | 70.95 | LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida] | [more] |
XP_022143526.1 | 2.9e-64 | 72.47 | (-)-germacrene D synthase-like isoform X1 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Q6Q3H3 | 1.7e-43 | 50.85 | (-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 S... | [more] |
B9SBV6 | 5.2e-40 | 50.00 | Probable terpene synthase 3 OS=Ricinus communis OX=3988 GN=TPS3 PE=3 SV=1 | [more] |
B9SCB6 | 7.4e-39 | 46.02 | Probable terpene synthase 2 OS=Ricinus communis OX=3988 GN=TPS2 PE=3 SV=1 | [more] |
Q6Q3H2 | 1.7e-38 | 48.31 | Valencene synthase OS=Vitis vinifera OX=29760 GN=ValCS PE=1 SV=1 | [more] |
O49853 | 2.8e-38 | 48.59 | (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum OX=29729 GN=CAD1-C2... | [more] |