Lag0017773 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017773
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description(-)-germacrene D synthase-like
Locationchr5: 8564753 .. 8565389 (+)
RNA-Seq ExpressionLag0017773
SyntenyLag0017773
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAAAACAACTTCACGAACTGAAAGAAAAAGTGAGAAGTATGCTTGCAGTTGCTGAAAAACCTTCAGAAAAACTAGGTTTAATTGATTCAATCCAACGGTTAGGTTTGTCATACCATTTTGAAGGGGAAATTACTGAAATTCTTCACCACTTCCAAAATCCTTGCAATGTTGATGATATCAATGATGAGAATCTTTACGTTATAGCTCTTAGATTTCGATTGCTTAGACAACAAGGTTATCATGTTTCATGCGGTGAGTCTTACGAAAAATTTTTTGTAAATAAAAATGCTAAATTATCATGTTATCATGTTGTAATTTGACCTCTGTAAATTTCAATCAGAGATATTCAATAAGTTTACCAATGAAAAAGGAGATTTGAAAGAATCAGTTGCTAAGGATGAAAGTGGTATATTAAATTTGTATGAGGCATCCCACTTGAGAATGAAGGGAGAAAATATATTGGATGAAGCATTGGCTTTCTCAACTATTCATCTTCAAGCATTGGTCATGGATTACAAGTCTCCTTTCTCAGATGAAGCTAAATATGCATTGAAGTGGCCAATCTATAAAGATTTGCCAAGGTTCATGACTTGGCACTATATCTCTCTTTATCACAACTGTTATAGGTGA

mRNA sequence

ATGGTGAGAAAACAACTTCACGAACTGAAAGAAAAAGTGAGAAGTATGCTTGCAGTTGCTGAAAAACCTTCAGAAAAACTAGGTTTAATTGATTCAATCCAACGGTTAGGTTTGTCATACCATTTTGAAGGGGAAATTACTGAAATTCTTCACCACTTCCAAAATCCTTGCAATGTTGATGATATCAATGATGAGAATCTTTACGTTATAGCTCTTAGATTTCGATTGCTTAGACAACAAGGTTATCATGTTTCATGCGAGATATTCAATAAGTTTACCAATGAAAAAGGAGATTTGAAAGAATCAGTTGCTAAGGATGAAAGTGGTATATTAAATTTGTATGAGGCATCCCACTTGAGAATGAAGGGAGAAAATATATTGGATGAAGCATTGGCTTTCTCAACTATTCATCTTCAAGCATTGGTCATGGATTACAAGTCTCCTTTCTCAGATGAAGCTAAATATGCATTGAAGTGGCCAATCTATAAAGATTTGCCAAGGTTCATGACTTGGCACTATATCTCTCTTTATCACAACTGTTATAGGTGA

Coding sequence (CDS)

ATGGTGAGAAAACAACTTCACGAACTGAAAGAAAAAGTGAGAAGTATGCTTGCAGTTGCTGAAAAACCTTCAGAAAAACTAGGTTTAATTGATTCAATCCAACGGTTAGGTTTGTCATACCATTTTGAAGGGGAAATTACTGAAATTCTTCACCACTTCCAAAATCCTTGCAATGTTGATGATATCAATGATGAGAATCTTTACGTTATAGCTCTTAGATTTCGATTGCTTAGACAACAAGGTTATCATGTTTCATGCGAGATATTCAATAAGTTTACCAATGAAAAAGGAGATTTGAAAGAATCAGTTGCTAAGGATGAAAGTGGTATATTAAATTTGTATGAGGCATCCCACTTGAGAATGAAGGGAGAAAATATATTGGATGAAGCATTGGCTTTCTCAACTATTCATCTTCAAGCATTGGTCATGGATTACAAGTCTCCTTTCTCAGATGAAGCTAAATATGCATTGAAGTGGCCAATCTATAAAGATTTGCCAAGGTTCATGACTTGGCACTATATCTCTCTTTATCACAACTGTTATAGGTGA

Protein sequence

MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVDDINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLRMKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLYHNCYR
Homology
BLAST of Lag0017773 vs. NCBI nr
Match: XP_022143530.1 (valencene synthase-like isoform X2 [Momordica charantia])

HSP 1 Score: 262.7 bits (670), Expect = 2.4e-66
Identity = 133/178 (74.72%), Postives = 149/178 (83.71%), Query Frame = 0

Query: 1   MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQN-PCNV 60
           MVRKQL E +E+VR ML  AEK SEKL LIDSIQRLG+SYHFEGEI EIL H QN  CN+
Sbjct: 44  MVRKQLEEQREEVRRMLEAAEKCSEKLSLIDSIQRLGISYHFEGEINEILEHMQNDSCNL 103

Query: 61  DDINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHL 120
           DD  DE++Y++ALRFRLLRQQGY VSCEIFN+FTN  GD KE++ KDE GIL+LYEASHL
Sbjct: 104 DD--DEDIYIVALRFRLLRQQGYSVSCEIFNRFTNGDGDFKETMLKDECGILSLYEASHL 163

Query: 121 RMKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
           RM GENILD+ALAF+T HLQA+ M   SPFS+EAKYALKWPIYK LPRF T HYISLY
Sbjct: 164 RMNGENILDKALAFTTTHLQAMAMSSSSPFSEEAKYALKWPIYKALPRFTTRHYISLY 219

BLAST of Lag0017773 vs. NCBI nr
Match: XP_022143529.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])

HSP 1 Score: 262.7 bits (670), Expect = 2.4e-66
Identity = 133/178 (74.72%), Postives = 149/178 (83.71%), Query Frame = 0

Query: 1   MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQN-PCNV 60
           MVRKQL E +E+VR ML  AEK SEKL LIDSIQRLG+SYHFEGEI EIL H QN  CN+
Sbjct: 44  MVRKQLEEQREEVRRMLEAAEKCSEKLSLIDSIQRLGISYHFEGEINEILEHMQNDSCNL 103

Query: 61  DDINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHL 120
           DD  DE++Y++ALRFRLLRQQGY VSCEIFN+FTN  GD KE++ KDE GIL+LYEASHL
Sbjct: 104 DD--DEDIYIVALRFRLLRQQGYSVSCEIFNRFTNGDGDFKETMLKDECGILSLYEASHL 163

Query: 121 RMKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
           RM GENILD+ALAF+T HLQA+ M   SPFS+EAKYALKWPIYK LPRF T HYISLY
Sbjct: 164 RMNGENILDKALAFTTTHLQAMAMSSSSPFSEEAKYALKWPIYKALPRFTTRHYISLY 219

BLAST of Lag0017773 vs. NCBI nr
Match: XP_031738277.1 ((-)-germacrene D synthase isoform X2 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 9.0e-66
Identity = 129/179 (72.07%), Postives = 150/179 (83.80%), Query Frame = 0

Query: 1   MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVD 60
           M+RK+L ELKE+VRSM     K S+KL LIDSIQRLGLSYHF+ EI E+L   +NPCNVD
Sbjct: 57  MIRKKLQELKEEVRSMFVTTNKFSKKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCNVD 116

Query: 61  DINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLR 120
           D   E+LY+ ALRFRLLRQQG+ VSCEIFNKFTNE+G+LKES+ KDE+G+L+LYEASHLR
Sbjct: 117 D-EHEDLYITALRFRLLRQQGFFVSCEIFNKFTNERGELKESIRKDENGLLSLYEASHLR 176

Query: 121 MKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLYHN 180
           MKGENILDEALAF+T HL+A+ MD  SPF +EAKYALKWPIYK + RFM  HYISLY N
Sbjct: 177 MKGENILDEALAFTTTHLKAMAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSN 234

BLAST of Lag0017773 vs. NCBI nr
Match: XP_038877743.1 (LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 1.3e-64
Identity = 127/179 (70.95%), Postives = 148/179 (82.68%), Query Frame = 0

Query: 1   MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVD 60
           MV KQ+ E KE+VR M  VAEK SEKL LIDSIQRLGLSYHF+ E +E++ + QNP NVD
Sbjct: 51  MVMKQVQEYKEEVRRMFGVAEKYSEKLSLIDSIQRLGLSYHFKDESSEVIDYIQNPTNVD 110

Query: 61  DINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLR 120
           +  DE+LY+ ALRFRLLRQQG+ VSC+IFNKFTNE GD KES+ KD +G ++LYEASHLR
Sbjct: 111 E-EDEDLYITALRFRLLRQQGFFVSCDIFNKFTNEMGDFKESIVKDGAGXISLYEASHLR 170

Query: 121 MKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLYHN 180
           MKGENILDEALAF+T  L+A+ MD  SPFS+EAKYALKWPIYK +PRFM  HYISLY N
Sbjct: 171 MKGENILDEALAFTTTQLKAMAMDSSSPFSEEAKYALKWPIYKAMPRFMNRHYISLYQN 228

BLAST of Lag0017773 vs. NCBI nr
Match: XP_022143526.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])

HSP 1 Score: 255.8 bits (652), Expect = 2.9e-64
Identity = 129/178 (72.47%), Postives = 147/178 (82.58%), Query Frame = 0

Query: 1   MVRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQN-PCNV 60
           +VRKQL E KE VR M+  A+K SEKL LIDSIQRLGLSYHFEGEI EIL H QN  CN+
Sbjct: 49  VVRKQLEEQKEGVRRMVEAADKCSEKLSLIDSIQRLGLSYHFEGEINEILEHMQNDSCNL 108

Query: 61  DDINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHL 120
           DD  DE++Y++ALRFRLLRQQGY VSCEIFN+FT E GD KES+ KDE GIL+LY+ASHL
Sbjct: 109 DD--DEDIYIVALRFRLLRQQGYSVSCEIFNRFTTENGDFKESMVKDECGILSLYQASHL 168

Query: 121 RMKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
            M GENILD+ALAF+T HLQA+ MD  SPF++EAKYALKWPIYK +PR  T HYISLY
Sbjct: 169 GMNGENILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPIYKAMPRXTTRHYISLY 224

BLAST of Lag0017773 vs. ExPASy Swiss-Prot
Match: Q6Q3H3 ((-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-43
Identity = 90/177 (50.85%), Postives = 127/177 (71.75%), Query Frame = 0

Query: 2   VRKQLHELKEKVRSMLAVAEKPS-EKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVD 61
           +++ + +LKE+VR ML  A+  S +KL LID+IQRLG++YHFE EI E+L H  +   V 
Sbjct: 50  LKQHVQQLKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDGSVVS 109

Query: 62  DINDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLR 121
              +E++Y  +LRFRLLRQQGYHVSC++FN F + +G+ KES++ D  G+L+LYEA+H R
Sbjct: 110 --AEEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFR 169

Query: 122 MKGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
           + GE+ILDEALAF+T HLQ+      +P +++  +ALK PI K LPR    HY S+Y
Sbjct: 170 VHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVY 224

BLAST of Lag0017773 vs. ExPASy Swiss-Prot
Match: B9SBV6 (Probable terpene synthase 3 OS=Ricinus communis OX=3988 GN=TPS3 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.2e-40
Identity = 88/176 (50.00%), Postives = 123/176 (69.89%), Query Frame = 0

Query: 3   RKQLHELKEKVRSM-LAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVDD 62
           ++Q   L+E+VR M ++  +KPS KL LID IQRLG++YHFE EI E++    +  N DD
Sbjct: 43  KEQAKVLEEEVRRMIISETQKPSGKLKLIDVIQRLGIAYHFEEEIGEVIEQVYS--NYDD 102

Query: 63  INDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLRM 122
             DE+LY IALRFRLLRQQGY+VS ++F+KF + KGD K+ +  D  G+L+L+EAS++ +
Sbjct: 103 --DEDLYDIALRFRLLRQQGYNVSSDVFDKFKDCKGDFKKHLVNDVQGLLSLHEASYMSV 162

Query: 123 KGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
           +GE ILDEAL F+  HL A  +   SP  D+  +AL+WP+ + LPR   W Y S+Y
Sbjct: 163 QGEKILDEALEFTKTHLMATQL--SSPLPDQVSHALRWPVRRGLPRKEAWQYFSIY 212

BLAST of Lag0017773 vs. ExPASy Swiss-Prot
Match: B9SCB6 (Probable terpene synthase 2 OS=Ricinus communis OX=3988 GN=TPS2 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.4e-39
Identity = 81/176 (46.02%), Postives = 121/176 (68.75%), Query Frame = 0

Query: 2   VRKQLHELKEKVRSMLAVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVDD 61
           + +Q+  LKE+V+ M+A A++PS+ L LID +QRLG+SYHFE EI E L    N  N D 
Sbjct: 45  MEQQVERLKEEVKKMIASADEPSQILNLIDLLQRLGVSYHFEKEIEEALQQVLN-MNSDS 104

Query: 62  INDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLRM 121
             D++L+ +ALRFRLLR+QG +VSC++FNKF +  G   +++  D  G+L+LYEA+H R+
Sbjct: 105 DKDDDLHSVALRFRLLREQGLNVSCDVFNKFRDRNGHFIQTLKTDLQGMLSLYEAAHFRV 164

Query: 122 KGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLY 178
            GE ILD+ALAF+T +L+++V +   P + +    L+ P+ K L R    H+IS+Y
Sbjct: 165 HGEGILDDALAFTTTYLESIVPNLSPPLAAQISRTLRQPLRKSLARVEARHFISIY 219

BLAST of Lag0017773 vs. ExPASy Swiss-Prot
Match: Q6Q3H2 (Valencene synthase OS=Vitis vinifera OX=29760 GN=ValCS PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.7e-38
Identity = 86/178 (48.31%), Postives = 120/178 (67.42%), Query Frame = 0

Query: 4   KQLHELKEKVRSML--AVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVDD 63
           +Q+ +LK++V+  L  A    PS+ L  ID++QRLG++YHFE EI E L H  N  +  +
Sbjct: 49  EQIEDLKKEVKRKLTAAAVANPSQLLNFIDAVQRLGVAYHFEQEIEEALQHICNSFHDCN 108

Query: 64  INDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLRM 123
             D +LY IAL FRLLRQQGY +SC+IFNKFT+E+G  KE++  D  G+L LYEA+HLR+
Sbjct: 109 DMDGDLYNIALGFRLLRQQGYTISCDIFNKFTDERGRFKEALISDVRGMLGLYEAAHLRV 168

Query: 124 KGENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLYHN 180
            GE+IL +ALAF+T HL+A+V       +++  +AL  PI K L R     YIS+Y +
Sbjct: 169 HGEDILAKALAFTTTHLKAMVESLGYHLAEQVAHALNRPIRKGLERLEARWYISVYQD 226

BLAST of Lag0017773 vs. ExPASy Swiss-Prot
Match: O49853 ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum OX=29729 GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.8e-38
Identity = 86/177 (48.59%), Postives = 119/177 (67.23%), Query Frame = 0

Query: 4   KQLHELKEKVRSML-AVAEKPSEKLGLIDSIQRLGLSYHFEGEITEILHHFQNPCNVDDI 63
           K+  +LKE+VR M+ A     ++KL  IDS+QRLG+SYHF  EI + L +  +  N D  
Sbjct: 50  KRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN-NNDAE 109

Query: 64  NDENLYVIALRFRLLRQQGYHVSCEIFNKFTNEKGDLKESVAKDESGILNLYEASHLRMK 123
           ND  LY  +LRFRLLR+ GY+VSC++FNKF +E+G+ K SV  D  G+L LY+AS+LR+ 
Sbjct: 110 ND--LYTTSLRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVQGLLELYQASYLRVH 169

Query: 124 GENILDEALAFSTIHLQALVMDYKSPFSDEAKYALKWPIYKDLPRFMTWHYISLYHN 180
           GE+ILDEA++F+T HL   V     P S+E  +ALK  I + LPR    HY+S+Y +
Sbjct: 170 GEDILDEAISFTTNHLSLAVSSLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQD 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143530.12.4e-6674.72valencene synthase-like isoform X2 [Momordica charantia][more]
XP_022143529.12.4e-6674.72(-)-germacrene D synthase-like isoform X1 [Momordica charantia][more]
XP_031738277.19.0e-6672.07(-)-germacrene D synthase isoform X2 [Cucumis sativus][more]
XP_038877743.11.3e-6470.95LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida][more]
XP_022143526.12.9e-6472.47(-)-germacrene D synthase-like isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Q6Q3H31.7e-4350.85(-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 S... [more]
B9SBV65.2e-4050.00Probable terpene synthase 3 OS=Ricinus communis OX=3988 GN=TPS3 PE=3 SV=1[more]
B9SCB67.4e-3946.02Probable terpene synthase 2 OS=Ricinus communis OX=3988 GN=TPS2 PE=3 SV=1[more]
Q6Q3H21.7e-3848.31Valencene synthase OS=Vitis vinifera OX=29760 GN=ValCS PE=1 SV=1[more]
O498532.8e-3848.59(+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum OX=29729 GN=CAD1-C2... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001906Terpene synthase, N-terminal domainPFAMPF01397Terpene_synthcoord: 3..157
e-value: 1.3E-50
score: 171.8
IPR008949Isoprenoid synthase domain superfamilyGENE3D1.10.600.10Farnesyl Diphosphate Synthasecoord: 4..19
e-value: 1.2E-60
score: 207.3
IPR036965Terpene synthase, N-terminal domain superfamilyGENE3D1.50.10.130coord: 20..179
e-value: 1.2E-60
score: 207.3
NoneNo IPR availablePANTHERPTHR31225OS04G0344100 PROTEIN-RELATEDcoord: 3..180
NoneNo IPR availablePANTHERPTHR31225:SF111TERPENE SYNTHASE 2-RELATEDcoord: 3..180
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidSUPERFAMILY48239Terpenoid cyclases/Protein prenyltransferasescoord: 3..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017773.1Lag0017773.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016102 diterpenoid biosynthetic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0010333 terpene synthase activity
molecular_function GO:0016829 lyase activity