Lag0017734 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017734
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr5: 8028339 .. 8028827 (-)
RNA-Seq ExpressionLag0017734
SyntenyLag0017734
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCTGGATCCAAGAAGGAGGATAAATGGATTGGGGTTACGTACGAGAAATTGCCAGATTTTTGCTATGGTTGTGGGTGGCTGGGTCACATCCTGAAAGAATATGAGATGCCATCAGAGTCAAGTGAGGTTGAGCTCCCCTATAGTCCTTGGCTTCGTGAACCTCCAAAGATTAGAGCCAAAGATGATTCTTATTTGGGGAGGAATATGCAGGGACGAGGAAGAGGGAGAGGGTGGAACCCGCACAGTGATCGGTGGAGGAACGACGATCCTGAGGGTGAGGAAGAGGGGATGGATGCAATTCTGGTGGTTCCAAGGGAACCAACACCGGCGGCGTATGTACCTACGACAGCTCAGGCGACAGTTTCAGACCAGACGGAATTGATGGACGGAACGGAGGCTCCAACGGTGGAAAATCCAAACTTGGTAACCAATTCGAGGAAGGAAAAACCTACCATGGATGGGGGCGGGAATCACGAAAATTGA

mRNA sequence

ATGAAATCTGGATCCAAGAAGGAGGATAAATGGATTGGGGTTACGTACGAGAAATTGCCAGATTTTTGCTATGGTTGTGGGTGGCTGGGTCACATCCTGAAAGAATATGAGATGCCATCAGAGTCAAGTGAGGTTGAGCTCCCCTATAGTCCTTGGCTTCGTGAACCTCCAAAGATTAGAGCCAAAGATGATTCTTATTTGGGGAGGAATATGCAGGGACGAGGAAGAGGGAGAGGGTGGAACCCGCACAGTGATCGGTGGAGGAACGACGATCCTGAGGGTGAGGAAGAGGGGATGGATGCAATTCTGGTGGTTCCAAGGGAACCAACACCGGCGGCGTATGTACCTACGACAGCTCAGGCGACAGTTTCAGACCAGACGGAATTGATGGACGGAACGGAGGCTCCAACGGTGGAAAATCCAAACTTGGTAACCAATTCGAGGAAGGAAAAACCTACCATGGATGGGGGCGGGAATCACGAAAATTGA

Coding sequence (CDS)

ATGAAATCTGGATCCAAGAAGGAGGATAAATGGATTGGGGTTACGTACGAGAAATTGCCAGATTTTTGCTATGGTTGTGGGTGGCTGGGTCACATCCTGAAAGAATATGAGATGCCATCAGAGTCAAGTGAGGTTGAGCTCCCCTATAGTCCTTGGCTTCGTGAACCTCCAAAGATTAGAGCCAAAGATGATTCTTATTTGGGGAGGAATATGCAGGGACGAGGAAGAGGGAGAGGGTGGAACCCGCACAGTGATCGGTGGAGGAACGACGATCCTGAGGGTGAGGAAGAGGGGATGGATGCAATTCTGGTGGTTCCAAGGGAACCAACACCGGCGGCGTATGTACCTACGACAGCTCAGGCGACAGTTTCAGACCAGACGGAATTGATGGACGGAACGGAGGCTCCAACGGTGGAAAATCCAAACTTGGTAACCAATTCGAGGAAGGAAAAACCTACCATGGATGGGGGCGGGAATCACGAAAATTGA

Protein sequence

MKSGSKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELPYSPWLREPPKIRAKDDSYLGRNMQGRGRGRGWNPHSDRWRNDDPEGEEEGMDAILVVPREPTPAAYVPTTAQATVSDQTELMDGTEAPTVENPNLVTNSRKEKPTMDGGGNHEN
Homology
BLAST of Lag0017734 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-05
Identity = 32/87 (36.78%), Postives = 45/87 (51.72%), Query Frame = 0

Query: 2   KSGSKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELPYSPWLREPPKIRA 61
           K G   ++KWI V+YEKLPDFCY CG +GH+++E +   +  E    +  WLR   K + 
Sbjct: 45  KLGVMAKEKWIPVSYEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQRFGVWLR---KSQT 104

Query: 62  KDDSYLGRNMQ---------GRGRGRG 80
                 GR  +         GRG G+G
Sbjct: 105 SQSISKGRREEVRSQFTIDRGRGEGKG 128

BLAST of Lag0017734 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-05
Identity = 49/142 (34.51%), Postives = 61/142 (42.96%), Query Frame = 0

Query: 5   SKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELP--YSPWLR-------- 64
           S  +D W  + YEKLPDFCY CG +GH  +E E  S+      P  Y  WLR        
Sbjct: 189 SDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGDWLRATLLKKSV 248

Query: 65  -EPPKIRAKDDSYLGRNMQ---GRGRGRGWNPHSDRWRN-DDPEGE-----EEGMDAILV 124
             P +         GR  Q   GRG    W    + WR+ D PE       EEG+D    
Sbjct: 249 SHPEEEVFWRGGRFGRGHQVNGGRGGRGDWRRRDENWRDIDGPESSHRRAVEEGVDR--- 308

Query: 125 VPREPTPAAYVPTTAQATVSDQ 127
           VP E +  A   T  QA ++ Q
Sbjct: 309 VPNEESVTAAEITLRQAKITSQ 327

BLAST of Lag0017734 vs. NCBI nr
Match: KAF4362718.1 (hypothetical protein G4B88_018336 [Cannabis sativa])

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 25/63 (39.68%), Postives = 33/63 (52.38%), Query Frame = 0

Query: 8   EDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAKD 67
           ++ WI   YE+LPDFCY CG +GH+  +     E   E  E  LPY PW+      R+  
Sbjct: 186 DELWIDYRYERLPDFCYECGIIGHVFDKCSLFLEKLDEGVEPNLPYGPWMEGSSLPRSSY 245

BLAST of Lag0017734 vs. NCBI nr
Match: TVU49578.1 (hypothetical protein EJB05_00892, partial [Eragrostis curvula])

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 30/71 (42.25%), Postives = 37/71 (52.11%), Query Frame = 0

Query: 4   GSKKEDKWIGVTYEKLPDFCYGCGWLGHILKEYEMPSESSEVELPYSPWLREPPKIRAKD 63
           G+    KW  + YE LPDFCY CG +GHI K Y    E  E E PY   LR  P+ R  D
Sbjct: 188 GNGGSGKWCPLMYEFLPDFCYVCGIIGHIDKHYAKKLEKGE-EAPYGKDLRYVPEKRRVD 247

Query: 64  DSYLGRNMQGR 75
            ++ G+    R
Sbjct: 248 ANFGGKGQGSR 257

BLAST of Lag0017734 vs. NCBI nr
Match: KAF4349140.1 (hypothetical protein F8388_015837 [Cannabis sativa] >KAF4394914.1 hypothetical protein G4B88_002791 [Cannabis sativa])

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-04
Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 0

Query: 7   KEDKWIGVTYEKLPDFCYGCGWLGHILKE----YEMPSESSEVELPYSPWLREPPKIRAK 66
           +++ W+   YE+LPDFCY CG +GH+  +     E   +  E  LPY PW+      R+ 
Sbjct: 146 EDELWLDYCYERLPDFCYECGIIGHVFDKCPIFLEKIDDGKEPSLPYGPWMEGSSLPRSA 205

Query: 67  DDSYL 68
            D Y+
Sbjct: 206 YDRYM 210

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046998.12.1e-0536.78reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcripta... [more]
XP_022149484.14.6e-0534.51uncharacterized protein LOC111017902 [Momordica charantia][more]
KAF4362718.11.8e-0439.68hypothetical protein G4B88_018336 [Cannabis sativa][more]
TVU49578.11.8e-0442.25hypothetical protein EJB05_00892, partial [Eragrostis curvula][more]
KAF4349140.11.8e-0435.38hypothetical protein F8388_015837 [Cannabis sativa] >KAF4394914.1 hypothetical p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 6..34
e-value: 6.0E-9
score: 35.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017734.1Lag0017734.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding