Lag0017729 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017729
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Cupredoxin
Location	chr5: 7993653 .. 7994054 (+)
RNA-Seq Expression	Lag0017729
Synteny	Lag0017729

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACGGGGTGAGGGTTGGATTTTGAAGAAGAAAGAGAATGGGGGTTGGGTTTTGAAGAAGAAGAAGGAGAGGTCAAAATTAGTGGAAATTTCTCTTCTTTTCCCAAAAATTTATCTGGGTTTTGAGTTTTTGATTGGTTTTTTTTTTTTTTTGTGTTTTTGAACTTCAAAATTTCAGTGGCATCCTTCACGGCCTGGTGTTTTCTTCTTATCTTTCAACAATGACTCTAAGAGCTCCTGCGATGGCTCTCAAAACCTTGCTGTGAAGGTTTCTGCTTCAGCCCCACCAAAAAGTTCACATCTTTCTCCACAGATCCCTCCAATGGCGGCTCCGGCGTCGATTTCCAGTGGAGTTATGTCGTCTGCTCCGGCATACCCTTGGCCGTTTCACCTTCGGTAA

mRNA sequence

ATGAAACGGGGTGAGGGTTGGATTTTGAAGAAGAAAGAGAATGGGGGTTGGGTTTTGAAGAAGAAGAAGGAGAGGTCAAAATTATGGCATCCTTCACGGCCTGGTGTTTTCTTCTTATCTTTCAACAATGACTCTAAGAGCTCCTGCGATGGCTCTCAAAACCTTGCTGTGAAGGTTTCTGCTTCAGCCCCACCAAAAAGTTCACATCTTTCTCCACAGATCCCTCCAATGGCGGCTCCGGCGTCGATTTCCAGTGGAGTTATGTCGTCTGCTCCGGCATACCCTTGGCCGTTTCACCTTCGGTAA

Coding sequence (CDS)

ATGAAACGGGGTGAGGGTTGGATTTTGAAGAAGAAAGAGAATGGGGGTTGGGTTTTGAAGAAGAAGAAGGAGAGGTCAAAATTATGGCATCCTTCACGGCCTGGTGTTTTCTTCTTATCTTTCAACAATGACTCTAAGAGCTCCTGCGATGGCTCTCAAAACCTTGCTGTGAAGGTTTCTGCTTCAGCCCCACCAAAAAGTTCACATCTTTCTCCACAGATCCCTCCAATGGCGGCTCCGGCGTCGATTTCCAGTGGAGTTATGTCGTCTGCTCCGGCATACCCTTGGCCGTTTCACCTTCGGTAA

Protein sequence

MKRGEGWILKKKENGGWVLKKKKERSKLWHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPMAAPASISSGVMSSAPAYPWPFHLR

Homology

[Close]

BLAST of Lag0017729 vs. NCBI nr
Match: XP_008441507.1 (PREDICTED: uncharacterized protein LOC103485611 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 6.2e-24
Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 18  VLKKKKERSKLWHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPM 77
           +L K    S +WHPSR G+FF SFNN SKSSC+GSQ  AVKVSAS+PP+SSHLSP  PPM
Sbjct: 72  LLTKPNSTSFMWHPSRLGIFFFSFNNGSKSSCNGSQKFAVKVSASSPPQSSHLSPHNPPM 131

Query: 78  AAPASISSGVMSSAPAYPWPFHLR 102
           AAPA +SSGV+ S PAYPWPFH R
Sbjct: 132 AAPAPVSSGVLPSTPAYPWPFHPR 155

[Close]

BLAST of Lag0017729 vs. NCBI nr
Match: XP_038884500.1 (early nodulin-like protein 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 18  VLKKKKERSKLWHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPM 77
           +L K    S +WHPSR G+FF SFNN SKSSC+GSQ LAVKVSAS P +SSHLSPQ PPM
Sbjct: 71  LLTKPNSTSFMWHPSRLGIFFFSFNNGSKSSCNGSQKLAVKVSASPPSQSSHLSPQNPPM 130

Query: 78  AAPASISSGVMSSAPAYPWPFHLR 102
           AAPA IS GV+ S PAYPWPFH R
Sbjct: 131 AAPAPISGGVLPSTPAYPWPFHPR 154

[Close]

BLAST of Lag0017729 vs. NCBI nr
Match: XP_038884501.1 (early nodulin-like protein 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 18  VLKKKKERSKLWHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPM 77
           +L K    S +WHPSR G+FF SFNN SKSSC+GSQ LAVKVSAS P +SSHLSPQ PPM
Sbjct: 71  LLTKPNSTSFMWHPSRLGIFFFSFNNGSKSSCNGSQKLAVKVSASPPSQSSHLSPQNPPM 130

Query: 78  AAPASISSGVMSSAPAYPWPFHLR 102
           AAPA IS GV+ S PAYPWPFH R
Sbjct: 131 AAPAPISGGVLPSTPAYPWPFHPR 154

[Close]

BLAST of Lag0017729 vs. NCBI nr
Match: XP_022992896.1 (uclacyanin-3 [Cucurbita maxima])

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-23
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 18  VLKKKKERSKLWHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPM 77
           +L K      +WHPSR GVFF +FNN SKSSC+GSQ LAVKV+ SAPP+SSHLSPQ PPM
Sbjct: 79  LLSKPNSTVFMWHPSRLGVFFFAFNNGSKSSCNGSQKLAVKVTDSAPPQSSHLSPQNPPM 138

Query: 78  AAPASISSGVMSSAPAYPWPFHLR 102
           AAPA IS GV+ S PAYPWPFH R
Sbjct: 139 AAPAPISGGVLPSTPAYPWPFHPR 162

[Close]

BLAST of Lag0017729 vs. NCBI nr
Match: KAA0054969.1 (early nodulin-like protein 1 [Cucumis melo var. makuwa] >TYK22758.1 early nodulin-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 5.2e-23
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 29  WHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPMAAPASISSGVM 88
           WHPSR G+FF SFNN SKSSC+GSQ  AVKVSAS+PP+SSHLSP  PPMAAPA +SSGV+
Sbjct: 19  WHPSRLGIFFFSFNNGSKSSCNGSQKFAVKVSASSPPQSSHLSPHNPPMAAPAPVSSGVL 78

Query: 89  SSAPAYPWPFHLR 102
            S PAYPWPFH R
Sbjct: 79  PSTPAYPWPFHPR 91

The following BLAST results are available for this feature:

BLAST of Lag0017729 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441507.1	6.2e-24	70.24	PREDICTED: uncharacterized protein LOC103485611 [Cucumis melo]	[more]
XP_038884500.1	1.8e-23	71.43	early nodulin-like protein 1 isoform X1 [Benincasa hispida]	[more]
XP_038884501.1	1.8e-23	71.43	early nodulin-like protein 1 isoform X2 [Benincasa hispida]	[more]
XP_022992896.1	4.0e-23	70.24	uclacyanin-3 [Cucurbita maxima]	[more]
KAA0054969.1	5.2e-23	76.71	early nodulin-like protein 1 [Cucumis melo var. makuwa] >TYK22758.1 early noduli...	[more]

BLAST of Lag0017729 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34662:SF3	OS04G0422700 PROTEIN	coord: 18..99
None	No IPR available	PANTHER	PTHR34662	OS04G0422700 PROTEIN	coord: 18..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017729.1	Lag0017729.1	mRNA