Lag0017729 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017729
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCupredoxin
Locationchr5: 7993653 .. 7994054 (+)
RNA-Seq ExpressionLag0017729
SyntenyLag0017729
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACGGGGTGAGGGTTGGATTTTGAAGAAGAAAGAGAATGGGGGTTGGGTTTTGAAGAAGAAGAAGGAGAGGTCAAAATTAGTGGAAATTTCTCTTCTTTTCCCAAAAATTTATCTGGGTTTTGAGTTTTTGATTGGTTTTTTTTTTTTTTTGTGTTTTTGAACTTCAAAATTTCAGTGGCATCCTTCACGGCCTGGTGTTTTCTTCTTATCTTTCAACAATGACTCTAAGAGCTCCTGCGATGGCTCTCAAAACCTTGCTGTGAAGGTTTCTGCTTCAGCCCCACCAAAAAGTTCACATCTTTCTCCACAGATCCCTCCAATGGCGGCTCCGGCGTCGATTTCCAGTGGAGTTATGTCGTCTGCTCCGGCATACCCTTGGCCGTTTCACCTTCGGTAA

mRNA sequence

ATGAAACGGGGTGAGGGTTGGATTTTGAAGAAGAAAGAGAATGGGGGTTGGGTTTTGAAGAAGAAGAAGGAGAGGTCAAAATTATGGCATCCTTCACGGCCTGGTGTTTTCTTCTTATCTTTCAACAATGACTCTAAGAGCTCCTGCGATGGCTCTCAAAACCTTGCTGTGAAGGTTTCTGCTTCAGCCCCACCAAAAAGTTCACATCTTTCTCCACAGATCCCTCCAATGGCGGCTCCGGCGTCGATTTCCAGTGGAGTTATGTCGTCTGCTCCGGCATACCCTTGGCCGTTTCACCTTCGGTAA

Coding sequence (CDS)

ATGAAACGGGGTGAGGGTTGGATTTTGAAGAAGAAAGAGAATGGGGGTTGGGTTTTGAAGAAGAAGAAGGAGAGGTCAAAATTATGGCATCCTTCACGGCCTGGTGTTTTCTTCTTATCTTTCAACAATGACTCTAAGAGCTCCTGCGATGGCTCTCAAAACCTTGCTGTGAAGGTTTCTGCTTCAGCCCCACCAAAAAGTTCACATCTTTCTCCACAGATCCCTCCAATGGCGGCTCCGGCGTCGATTTCCAGTGGAGTTATGTCGTCTGCTCCGGCATACCCTTGGCCGTTTCACCTTCGGTAA

Protein sequence

MKRGEGWILKKKENGGWVLKKKKERSKLWHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPMAAPASISSGVMSSAPAYPWPFHLR
Homology
BLAST of Lag0017729 vs. NCBI nr
Match: XP_008441507.1 (PREDICTED: uncharacterized protein LOC103485611 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 6.2e-24
Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = 0

Query: 18  VLKKKKERSKLWHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPM 77
           +L K    S +WHPSR G+FF SFNN SKSSC+GSQ  AVKVSAS+PP+SSHLSP  PPM
Sbjct: 72  LLTKPNSTSFMWHPSRLGIFFFSFNNGSKSSCNGSQKFAVKVSASSPPQSSHLSPHNPPM 131

Query: 78  AAPASISSGVMSSAPAYPWPFHLR 102
           AAPA +SSGV+ S PAYPWPFH R
Sbjct: 132 AAPAPVSSGVLPSTPAYPWPFHPR 155

BLAST of Lag0017729 vs. NCBI nr
Match: XP_038884500.1 (early nodulin-like protein 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 0

Query: 18  VLKKKKERSKLWHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPM 77
           +L K    S +WHPSR G+FF SFNN SKSSC+GSQ LAVKVSAS P +SSHLSPQ PPM
Sbjct: 71  LLTKPNSTSFMWHPSRLGIFFFSFNNGSKSSCNGSQKLAVKVSASPPSQSSHLSPQNPPM 130

Query: 78  AAPASISSGVMSSAPAYPWPFHLR 102
           AAPA IS GV+ S PAYPWPFH R
Sbjct: 131 AAPAPISGGVLPSTPAYPWPFHPR 154

BLAST of Lag0017729 vs. NCBI nr
Match: XP_038884501.1 (early nodulin-like protein 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 0

Query: 18  VLKKKKERSKLWHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPM 77
           +L K    S +WHPSR G+FF SFNN SKSSC+GSQ LAVKVSAS P +SSHLSPQ PPM
Sbjct: 71  LLTKPNSTSFMWHPSRLGIFFFSFNNGSKSSCNGSQKLAVKVSASPPSQSSHLSPQNPPM 130

Query: 78  AAPASISSGVMSSAPAYPWPFHLR 102
           AAPA IS GV+ S PAYPWPFH R
Sbjct: 131 AAPAPISGGVLPSTPAYPWPFHPR 154

BLAST of Lag0017729 vs. NCBI nr
Match: XP_022992896.1 (uclacyanin-3 [Cucurbita maxima])

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-23
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 0

Query: 18  VLKKKKERSKLWHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPM 77
           +L K      +WHPSR GVFF +FNN SKSSC+GSQ LAVKV+ SAPP+SSHLSPQ PPM
Sbjct: 79  LLSKPNSTVFMWHPSRLGVFFFAFNNGSKSSCNGSQKLAVKVTDSAPPQSSHLSPQNPPM 138

Query: 78  AAPASISSGVMSSAPAYPWPFHLR 102
           AAPA IS GV+ S PAYPWPFH R
Sbjct: 139 AAPAPISGGVLPSTPAYPWPFHPR 162

BLAST of Lag0017729 vs. NCBI nr
Match: KAA0054969.1 (early nodulin-like protein 1 [Cucumis melo var. makuwa] >TYK22758.1 early nodulin-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 5.2e-23
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 29  WHPSRPGVFFLSFNNDSKSSCDGSQNLAVKVSASAPPKSSHLSPQIPPMAAPASISSGVM 88
           WHPSR G+FF SFNN SKSSC+GSQ  AVKVSAS+PP+SSHLSP  PPMAAPA +SSGV+
Sbjct: 19  WHPSRLGIFFFSFNNGSKSSCNGSQKFAVKVSASSPPQSSHLSPHNPPMAAPAPVSSGVL 78

Query: 89  SSAPAYPWPFHLR 102
            S PAYPWPFH R
Sbjct: 79  PSTPAYPWPFHPR 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008441507.16.2e-2470.24PREDICTED: uncharacterized protein LOC103485611 [Cucumis melo][more]
XP_038884500.11.8e-2371.43early nodulin-like protein 1 isoform X1 [Benincasa hispida][more]
XP_038884501.11.8e-2371.43early nodulin-like protein 1 isoform X2 [Benincasa hispida][more]
XP_022992896.14.0e-2370.24uclacyanin-3 [Cucurbita maxima][more]
KAA0054969.15.2e-2376.71early nodulin-like protein 1 [Cucumis melo var. makuwa] >TYK22758.1 early noduli... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34662:SF3OS04G0422700 PROTEINcoord: 18..99
NoneNo IPR availablePANTHERPTHR34662OS04G0422700 PROTEINcoord: 18..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017729.1Lag0017729.1mRNA