Lag0017728 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017728
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionserine-rich protein-related
Locationchr5: 7966655 .. 7966963 (-)
RNA-Seq ExpressionLag0017728
SyntenyLag0017728
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCGATCAGGACGGAATCCAAACAGGCGAAGACGAATTGCAAGCCGACCTCGAAATCGGAGTTGGACTTCGACGATCTGAAGAAGAATGCGCATCTGCTAATGTCGCCGACGGCGTTAGGGAGGTTGACGAAGTCGCCGAGCATTAAGTCGAACTGCCTCTGCTCTCCGACGACTCACATCGGATCGTTCCGGTGCCGGCGCCACCGGAGCACCGCCATCTTCCGCGGCGGCTCCGTCGGCTCAAACCTGTCCGATCTGGGTCAGAAATCGGCGGCGATGGAGGATTCATTGGAAGGTCAGTAG

mRNA sequence

ATGGAACCGATCAGGACGGAATCCAAACAGGCGAAGACGAATTGCAAGCCGACCTCGAAATCGGAGTTGGACTTCGACGATCTGAAGAAGAATGCGCATCTGCTAATGTCGCCGACGGCGTTAGGGAGGTTGACGAAGTCGCCGAGCATTAAGTCGAACTGCCTCTGCTCTCCGACGACTCACATCGGATCGTTCCGGTGCCGGCGCCACCGGAGCACCGCCATCTTCCGCGGCGGCTCCGTCGGCTCAAACCTGTCCGATCTGGGTCAGAAATCGGCGGCGATGGAGGATTCATTGGAAGGTCAGTAG

Coding sequence (CDS)

ATGGAACCGATCAGGACGGAATCCAAACAGGCGAAGACGAATTGCAAGCCGACCTCGAAATCGGAGTTGGACTTCGACGATCTGAAGAAGAATGCGCATCTGCTAATGTCGCCGACGGCGTTAGGGAGGTTGACGAAGTCGCCGAGCATTAAGTCGAACTGCCTCTGCTCTCCGACGACTCACATCGGATCGTTCCGGTGCCGGCGCCACCGGAGCACCGCCATCTTCCGCGGCGGCTCCGTCGGCTCAAACCTGTCCGATCTGGGTCAGAAATCGGCGGCGATGGAGGATTCATTGGAAGGTCAGTAG

Protein sequence

MEPIRTESKQAKTNCKPTSKSELDFDDLKKNAHLLMSPTALGRLTKSPSIKSNCLCSPTTHIGSFRCRRHRSTAIFRGGSVGSNLSDLGQKSAAMEDSLEGQ
Homology
BLAST of Lag0017728 vs. NCBI nr
Match: TYK19387.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 6.4e-37
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 0

Query: 1   MEPIRTESKQAKTNCK-PTSKS---ELDFDDLKKNAHLLMSPTALGRLTKSPSIKSNCLC 60
           M+PIRT+SKQ KTNCK PTSKS   E +FDDLKKNAHLLMSPTAL R+TKSPSIKSNCLC
Sbjct: 1   MDPIRTDSKQTKTNCKTPTSKSAMVETEFDDLKKNAHLLMSPTALSRMTKSPSIKSNCLC 60

Query: 61  SPTTHIGSFRCRRHRSTAIFRGGSVGSNLSDLGQKSAAMED 98
           SPTTHIGSFRCRRHRSTA+ RG SVGSNLSDLGQKS  MED
Sbjct: 61  SPTTHIGSFRCRRHRSTAMSRGASVGSNLSDLGQKSETMED 101

BLAST of Lag0017728 vs. NCBI nr
Match: KGN55991.1 (hypothetical protein Csa_011649 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 1.3e-34
Identity = 83/101 (82.18%), Postives = 89/101 (88.12%), Query Frame = 0

Query: 1   MEPIRTESKQAKTNCK-PTSKS---ELDFDDLKKNAHLLMSPTALGRLTKSPSIKSNCLC 60
           M+PIRT+ KQ KTNCK PTSKS   E +FDDLKKNA+LLMSPTAL R+TKS SIKSNCLC
Sbjct: 1   MDPIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLC 60

Query: 61  SPTTHIGSFRCRRHRSTAIFRGGSVGSNLSDLGQKSAAMED 98
           SPTTHIGSFRCRRHRST+I RGGSVGSNLSDL QKS AMED
Sbjct: 61  SPTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKSEAMED 101

BLAST of Lag0017728 vs. NCBI nr
Match: XP_022143490.1 (uncharacterized protein LOC111013367 [Momordica charantia])

HSP 1 Score: 147.5 bits (371), Expect = 6.2e-32
Identity = 80/105 (76.19%), Postives = 89/105 (84.76%), Query Frame = 0

Query: 1   MEPIRTESKQAKTNCK-PTSKS---ELDFDDLKKNAH-LLMSPTALGRLTKSPSIKSNCL 60
           M+ +  E KQ K NCK PT+KS   ELD D+LKK++H L+MSPTAL R++KSPS KSNCL
Sbjct: 1   MDHVGAEPKQPKMNCKTPTAKSALPELDLDELKKSSHNLVMSPTALSRMSKSPSTKSNCL 60

Query: 61  CSPTTHIGSFRCRRHRSTAIFRGGSVGSNLSDLGQKSAAMEDSLE 101
           CSPTTHIGSFRCRRHRSTAI RGGSVGSNLSDL QKSAAMEDSLE
Sbjct: 61  CSPTTHIGSFRCRRHRSTAISRGGSVGSNLSDLAQKSAAMEDSLE 105

BLAST of Lag0017728 vs. NCBI nr
Match: KAG7015599.1 (hypothetical protein SDJN02_23235, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-24
Identity = 68/106 (64.15%), Postives = 77/106 (72.64%), Query Frame = 0

Query: 1   MEPIRTESKQAKTNC-KPTSKS---ELDFDDLKKNAHLLMSPTALGRLTKSPSIKSNCLC 60
           MEPI  E KQ  TNC  PTSKS   EL+ DD KKNA          ++T+SPS +S CLC
Sbjct: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNA----------QMTRSPSARSTCLC 60

Query: 61  SPTTHIGSFRCRRHRSTAIFRGGSVGSNLSDLGQKSAAMEDSLEGQ 103
           SPTTH+GSFRCR HR TAI RGGS GSNLSDL QKSAA+EDS+EG+
Sbjct: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSMEGE 96

BLAST of Lag0017728 vs. NCBI nr
Match: KAG6577543.1 (hypothetical protein SDJN03_25117, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 67/104 (64.42%), Postives = 75/104 (72.12%), Query Frame = 0

Query: 1   MEPIRTESKQAKTNC-KPTSKS---ELDFDDLKKNAHLLMSPTALGRLTKSPSIKSNCLC 60
           MEPI  E KQ  TNC  PTSKS   EL+ DD KKNA          ++T+SPS +S CLC
Sbjct: 1   MEPIIAEPKQVTTNCNSPTSKSAQPELELDDQKKNA----------QMTRSPSARSTCLC 60

Query: 61  SPTTHIGSFRCRRHRSTAIFRGGSVGSNLSDLGQKSAAMEDSLE 101
           SPTTH+GSFRCR HR TAI RGGS GSNLSDL QKSAA+EDS+E
Sbjct: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSME 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK19387.16.4e-3784.16putative PGPS/D10 protein [Cucumis melo var. makuwa][more]
KGN55991.11.3e-3482.18hypothetical protein Csa_011649 [Cucumis sativus][more]
XP_022143490.16.2e-3276.19uncharacterized protein LOC111013367 [Momordica charantia][more]
KAG7015599.12.1e-2464.15hypothetical protein SDJN02_23235, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577543.12.4e-2364.42hypothetical protein SDJN03_25117, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 10..101
NoneNo IPR availablePANTHERPTHR33132:SF73SERINE-RICH PROTEIN-LIKE PROTEINcoord: 10..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017728.1Lag0017728.1mRNA