Lag0017714 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017714
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionzinc finger A20 and AN1 domain-containing stress-associated protein 10-like
Locationchr5: 7533050 .. 7533493 (-)
RNA-Seq ExpressionLag0017714
SyntenyLag0017714
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCTTTTGGAAGCTCAAAGAATGAAAATGACGCACCACTCTACGCCAACAACTGTGGCTTCTACGGAAATCCGAAGAATCATAACTTGTGTTTGTTTGCTACGCCGCTTTCCTTAGAGAAACCGACGAAGATTCTCATGACGAGAGAGCTCAAACAATGTCGTTTGCTCAAAAAATCTGATCGGCACAGAACTCGCCGAAACTCACGATGCAGAACCAAATCTCGGAACGAGACGATCTCCGACGGCAGAGAGAGTTCCGAAACTTCTGAATTGGTAGCCGATTTGAATAATCTGGCGCCTAAAAGGAAAAATAGGTGCAAAATCTGCAAGAAGAAGGTAAGATTGTTGGGATTCAAGTGTCGGTGTGGAAGGAGAAGAAACCCAAAAACAAAATGGTGGCTGGGGTTTGGAGAATGGAGGCGACAAGATGGTGGCTAG

mRNA sequence

ATGGTTGCTTTTGGAAGCTCAAAGAATGAAAATGACGCACCACTCTACGCCAACAACTGTGGCTTCTACGGAAATCCGAAGAATCATAACTTGTGTTTGTTTGCTACGCCGCTTTCCTTAGAGAAACCGACGAAGATTCTCATGACGAGAGAGCTCAAACAATGTCGTTTGCTCAAAAAATCTGATCGGCACAGAACTCGCCGAAACTCACGATGCAGAACCAAATCTCGGAACGAGACGATCTCCGACGGCAGAGAGAGTTCCGAAACTTCTGAATTGGTAGCCGATTTGAATAATCTGGCGCCTAAAAGGAAAAATAGGTGCAAAATCTGCAAGAAGAAGGTAAGATTGTTGGGATTCAAGTGTCGGTGTGGAAGGAGAAGAAACCCAAAAACAAAATGGTGGCTGGGGTTTGGAGAATGGAGGCGACAAGATGGTGGCTAG

Coding sequence (CDS)

ATGGTTGCTTTTGGAAGCTCAAAGAATGAAAATGACGCACCACTCTACGCCAACAACTGTGGCTTCTACGGAAATCCGAAGAATCATAACTTGTGTTTGTTTGCTACGCCGCTTTCCTTAGAGAAACCGACGAAGATTCTCATGACGAGAGAGCTCAAACAATGTCGTTTGCTCAAAAAATCTGATCGGCACAGAACTCGCCGAAACTCACGATGCAGAACCAAATCTCGGAACGAGACGATCTCCGACGGCAGAGAGAGTTCCGAAACTTCTGAATTGGTAGCCGATTTGAATAATCTGGCGCCTAAAAGGAAAAATAGGTGCAAAATCTGCAAGAAGAAGGTAAGATTGTTGGGATTCAAGTGTCGGTGTGGAAGGAGAAGAAACCCAAAAACAAAATGGTGGCTGGGGTTTGGAGAATGGAGGCGACAAGATGGTGGCTAG

Protein sequence

MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKKSDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGFKCRCGRRRNPKTKWWLGFGEWRRQDGG
Homology
[Close]
BLAST of Lag0017714 vs. NCBI nr
Match: KAG7014809.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-19
Identity = 63/125 (50.40%), Postives = 74/125 (59.20%), Query Frame = 0 

Query: 1   MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKK 60
           M  FGSSKN+NDAPL ANNCGFYG+PKN NLC F     L++  +     E    R+ ++
Sbjct: 1   MAGFGSSKNDNDAPLCANNCGFYGSPKNRNLCSFCYAAFLKETGENSERLENSNHRIREE 60

Query: 61  SDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGF 120
               R RR                 +SSETSE VADLNN A K K RCKICKKK+ +LGF
Sbjct: 61  EPNLRKRR------------FPWAGQSSETSEPVADLNNPANKTKIRCKICKKKIGMLGF 113

Query: 121 KCRCG 126
            CRCG
Sbjct: 121 NCRCG 113

[Close]
BLAST of Lag0017714 vs. NCBI nr
Match: KAG6576775.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-18
Identity = 62/125 (49.60%), Postives = 73/125 (58.40%), Query Frame = 0 

Query: 1   MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKK 60
           M  FGSS N+NDAPL ANNCGFYG+PKN NLC F     L++  +     E    R+ ++
Sbjct: 862 MAGFGSSNNDNDAPLCANNCGFYGSPKNRNLCSFCYAAFLKETGENSERLENSNHRIREE 921

Query: 61  SDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGF 120
               R RR                 +SSETSE VADLNN A K K RCKICKKK+ +LGF
Sbjct: 922 EPNLRKRR------------FPWAGQSSETSEPVADLNNPANKTKIRCKICKKKIGMLGF 974

Query: 121 KCRCG 126
            CRCG
Sbjct: 982 NCRCG 974

[Close]
BLAST of Lag0017714 vs. NCBI nr
Match: XP_023542516.1 (zinc finger A20 and AN1 domain-containing stress-associated protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 9.3e-13
Identity = 51/125 (40.80%), Postives = 69/125 (55.20%), Query Frame = 0 

Query: 1   MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKK 60
           M  FGSS+N ND+PL ANNCGF+GNPK  NLC       L++    + T         K 
Sbjct: 1   MAGFGSSENSNDSPLCANNCGFFGNPKTRNLCSICYAAFLKENLISIPT---------KP 60

Query: 61  SDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGF 120
            +  + R++S    KS  E+I      +  +   ++ ++ AP RKNRC +C KKV LLGF
Sbjct: 61  DEVAQRRQDSDDSLKSDLESIEVSESETAMNPSCSETDSKAPARKNRCGLCNKKVGLLGF 116

Query: 121 KCRCG 126
            CRCG
Sbjct: 121 SCRCG 116

[Close]
BLAST of Lag0017714 vs. NCBI nr
Match: KAG6574126.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 0 

Query: 1   MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKK 60
           M  FGSS+N ND+PL ANNCGF+GNPK  NLC       L++    + T         K 
Sbjct: 1   MAGFGSSENSNDSPLCANNCGFFGNPKTRNLCSICYAAFLKENLISIPT---------KP 60

Query: 61  SDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGF 120
            +  + R++S    KS  E+I      +  +    + ++ AP RKNRC +C KKV LLGF
Sbjct: 61  DEVAQRRQDSDDSLKSDLESIEVSESETAMNPSCPETDSKAPARKNRCGLCNKKVGLLGF 116

Query: 121 KCRCG 126
            CRCG
Sbjct: 121 SCRCG 116

[Close]
BLAST of Lag0017714 vs. NCBI nr
Match: KAG7013187.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 0 

Query: 1   MVAFGSSKNENDAPLYANNCGFYGNPKNHNLCLFATPLSLEKPTKILMTRELKQCRLLKK 60
           M  FGSS+N ND+PL ANNCGF+GNPK  NLC       L++    + T         K 
Sbjct: 1   MAGFGSSENSNDSPLCANNCGFFGNPKTRNLCSICYAAFLKENLISIPT---------KP 60

Query: 61  SDRHRTRRNSRCRTKSRNETISDGRESSETSELVADLNNLAPKRKNRCKICKKKVRLLGF 120
            +  + R++S    KS  E+I      +  +    + ++ AP RKNRC +C KKV LLGF
Sbjct: 61  DEVAQRRQDSDDSLKSDLESIEVSESETAMNPSCPETDSKAPARKNRCGLCNKKVGLLGF 116

Query: 121 KCRCG 126
            CRCG
Sbjct: 121 SCRCG 116

The following BLAST results are available for this feature:
BLAST of Lag0017714 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014809.13.9e-1950.40Zinc finger A20 and AN1 domain-containing stress-associated protein 10, partial ... [more]
KAG6576775.11.5e-1849.60Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023542516.19.3e-1340.80zinc finger A20 and AN1 domain-containing stress-associated protein 6-like [Cucu... [more]
KAG6574126.11.6e-1240.80Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [... [more]
KAG7013187.11.6e-1240.80Zinc finger A20 and AN1 domain-containing stress-associated protein 6, partial [... [more]
BLAST of Lag0017714 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035896AN1-like Zinc fingerGENE3D4.10.1110.10coord: 78..127
e-value: 2.1E-7
score: 32.8
IPR035896AN1-like Zinc fingerSUPERFAMILY118310AN1-like Zinc fingercoord: 99..126
IPR002653Zinc finger, A20-typePFAMPF01754zf-A20coord: 17..32
e-value: 1.1E-4
score: 22.0
NoneNo IPR availableGENE3D1.20.5.4770coord: 5..33
e-value: 6.1E-7
score: 31.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..89
NoneNo IPR availablePANTHERPTHR10634:SF116ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 10coord: 11..126
NoneNo IPR availablePANTHERPTHR10634AN1-TYPE ZINC FINGER PROTEINcoord: 11..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017714.1Lag0017714.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding