Lag0017708 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017708
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr5: 7400786 .. 7401088 (+)
RNA-Seq Expression	Lag0017708
Synteny	Lag0017708

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCTATCGATAAAGACACTCACTCACCTATTTTCTTACTCTCCAACATTTGTAATCTGATCTCTCTACGACTTGATTCAACGAATTTTGTTCTCTGGAAATTCCAATTGCAGTCAATTTTGAAAGCCCACAAATTATTTGGGTTCATTGATGGATCTACAGTATGTCCTCCAAAGATGATTTCATCATCTGCTTTGTCTTCCTCAACCTCTGTTGATGTTGCAGCTGATACACCTCTTGCTCCTACTGTTTTTCATAGCATCCGACCTCTTTCAGTCGAAGTCTCCTGCAAAGCTTGA

mRNA sequence

ATGACGTCTATCGATAAAGACACTCACTCACCTATTTTCTTACTCTCCAACATTTGTAATCTGATCTCTCTACGACTTGATTCAACGAATTTTGTTCTCTGGAAATTCCAATTGCAGTCAATTTTGAAAGCCCACAAATTATTTGGGTTCATTGATGGATCTACAGTATGTCCTCCAAAGATGATTTCATCATCTGCTTTGTCTTCCTCAACCTCTGTTGATGTTGCAGCTGATACACCTCTTGCTCCTACTGTTTTTCATAGCATCCGACCTCTTTCAGTCGAAGTCTCCTGCAAAGCTTGA

Coding sequence (CDS)

ATGACGTCTATCGATAAAGACACTCACTCACCTATTTTCTTACTCTCCAACATTTGTAATCTGATCTCTCTACGACTTGATTCAACGAATTTTGTTCTCTGGAAATTCCAATTGCAGTCAATTTTGAAAGCCCACAAATTATTTGGGTTCATTGATGGATCTACAGTATGTCCTCCAAAGATGATTTCATCATCTGCTTTGTCTTCCTCAACCTCTGTTGATGTTGCAGCTGATACACCTCTTGCTCCTACTGTTTTTCATAGCATCCGACCTCTTTCAGTCGAAGTCTCCTGCAAAGCTTGA

Protein sequence

MTSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMISSSALSSSTSVDVAADTPLAPTVFHSIRPLSVEVSCKA

Homology

[Close]

BLAST of Lag0017708 vs. NCBI nr
Match: XP_022152754.1 (uncharacterized protein LOC111020396 isoform X4 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 4  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMIS 63
          I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K ++
Sbjct: 6  IENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPPEKFVA 65

Query: 64 SSALSSSTSVDVAA 78
          +S L SS+S+D A+
Sbjct: 66 ASTLESSSSIDSAS 79

[Close]

BLAST of Lag0017708 vs. NCBI nr
Match: XP_022152753.1 (uncharacterized protein LOC111020396 isoform X3 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 4  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMIS 63
          I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K ++
Sbjct: 6  IENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPPEKFVA 65

Query: 64 SSALSSSTSVDVAA 78
          +S L SS+S+D A+
Sbjct: 66 ASTLESSSSIDSAS 79

[Close]

BLAST of Lag0017708 vs. NCBI nr
Match: XP_022152751.1 (uncharacterized protein LOC111020396 isoform X1 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 4  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMIS 63
          I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K ++
Sbjct: 6  IENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPPEKFVA 65

Query: 64 SSALSSSTSVDVAA 78
          +S L SS+S+D A+
Sbjct: 66 ASTLESSSSIDSAS 79

[Close]

BLAST of Lag0017708 vs. NCBI nr
Match: XP_022152752.1 (uncharacterized protein LOC111020396 isoform X2 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 4  IDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKMIS 63
          I+ D +SPIFLLSNICNLIS+RLDSTNF+LWKFQL +ILKAHKLF FIDGS+  P K ++
Sbjct: 6  IENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPPEKFVA 65

Query: 64 SSALSSSTSVDVAA 78
          +S L SS+S+D A+
Sbjct: 66 ASTLESSSSIDSAS 79

[Close]

BLAST of Lag0017708 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 49/68 (72.06%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 2  TSIDKDTHSPIFLLSNICNLISLRLDSTNFVLWKFQLQSILKAHKLFGFIDGSTVCPPKM 61
          +S +KD+ SPIFLLSNICNLIS+RLDSTNFVLWKFQL +ILKAHKL+GFIDG+  CPP+ 
Sbjct: 10 SSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRT 69

Query: 62 ISSSALSS 70
           +SS+ S+
Sbjct: 70 NNSSSTST 77

The following BLAST results are available for this feature:

BLAST of Lag0017708 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152754.1	2.0e-19	68.92	uncharacterized protein LOC111020396 isoform X4 [Momordica charantia]	[more]
XP_022152753.1	2.0e-19	68.92	uncharacterized protein LOC111020396 isoform X3 [Momordica charantia]	[more]
XP_022152751.1	2.0e-19	68.92	uncharacterized protein LOC111020396 isoform X1 [Momordica charantia]	[more]
XP_022152752.1	2.0e-19	68.92	uncharacterized protein LOC111020396 isoform X2 [Momordica charantia]	[more]
XP_008448007.1	1.3e-18	72.06	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]

BLAST of Lag0017708 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 20..58 e-value: 4.1E-10 score: 39.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017708.1	Lag0017708.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding