Lag0017704 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017704
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr5: 7283268 .. 7284378 (-)
RNA-Seq Expression	Lag0017704
Synteny	Lag0017704

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGTTAAGTGGCATATCTTATCTCCCCTGGATTATCGAGGGAGATTTTAACAAGATCTTTTTTGCTGATGAAAAGAGAGGAGCGGAAAGGAGCCAAAACCTCATGGAGGCATTCCGTGTGGCTTTGGGTAGATGCAATTTAGCAAATCTGGGAGCCCCTAGAAACATGTTCACTTGGATGAAAAGGGTGAGAGGGGGTACGACCATTGCAGAAAGACTGGACCGTTTCTTGGCAAACGACAAGTTTAGATCTTTGTTTGGAAATATTGGCATCGGTCACCTGAACAAAACAAGCATGGCTCGGACCACCATCTTATTTTGGCTTCCATAGCTGAAAGTGGAAGTACTAAAGAAGTTATTAAAAGATTGACCCCGATCAGGTTTGAATGAAGTTGGTTGGCTCACGAAGAGTGCAAAGATATTGTTAAAAACCATTGGCAATCGCTGTGCCTAGATCCATTCAGAACAATATTGAAGAAACATCAAGAAAATTCAAACAATCTCAACCCCCCTCCAATTCGAGAACCATTCGAGTCACCCGTGGAAGCCGTCAGACCCCAACTTTTGGAAATTAAACTATGTGCCGCCTGGTTCGAGAAGGACGACAAGGGTGGGATTGCGTGGACCATTTGTGACTCCAACAGGTCTCTTATAGGAGCGGGCTGCAAGAAAATCCAGAGGAAATGACCTATCAAATGCTTGGAAGTGCAACCAATTGTCGAAGGGTTGTCTGAGTATAGGAAGATTGAAAATTTCGAAGGAATAAGATGCAACTACCTCTGGCTGTTGAATCAGATTACGTCGAGGTCGTGGGGGCTTTCAATCGCGAGCTTGAAGACCAATCGGAGCTTTGTTTTTTTGTTGAAGAAATCCAGTTGCTCTCGTCGTCGTTGGGTATCTCGTCTCTCTCCAAGTGCTCGAGGAAGAACAACTCTTTGGCTCACGATCTGGCTCGAGCGATAGCAAAAAATGGGAATTTCGGTTTTTTTGGTTCTCATCTTCTCTACGGGGAAGAGGACGATCAATTTAGAAGGGAAAAGTCTTTCCCCTTTTGGTTCTCATCATGTATTCCCTATGAGTTTGGTGTATTTAACATTTTAGTTTAA

mRNA sequence

ATGGAAAGGTTAAGTGGCATATCTTATCTCCCCTGGATTATCGAGGGAGATTTTAACAAGATCTTTTTTGCTGATGAAAAGAGAGGAGCGGAAAGGAGCCAAAACCTCATGGAGGCATTCCGTGTGGCTTTGGGTAGATGCAATTTAGCAAATCTGGGAGCCCCTAGAAACATGTTCACTTGGATGAAAAGGGTGAGAGGGGGTACGACCATTGCAGAAAGACTGGACCGTTTCTTGGCAAACGACAAGTTTAGATCTTTGTTTGGAAATATTGGCATCGATCCATTCAGAACAATATTGAAGAAACATCAAGAAAATTCAAACAATCTCAACCCCCCTCCAATTCGAGAACCATTCGAGTCACCCGTGGAAGCCGTCAGACCCCAACTTTTGGAAATTAAACTATGTGCCGCCTGGTTCGAGAAGGACGACAAGGGTGGGATTGCGTGGACCATTTGTGACTCCAACAGGAATAAGATGCAACTACCTCTGGCTGTTGAATCAGATTACGTCGAGGTCGTGGGGGCTTTCAATCGCGAGCTTGAAGACCAATCGGAGCTTTGTTTTTTTGTTGAAGAAATCCAGTTGCTCTCGTCGTCGTTGGGTATCTCGTCTCTCTCCAAGTGCTCGAGGAAGAACAACTCTTTGGCTCACGATCTGGCTCGAGCGATAGCAAAAAATGGGAATTTCGGTTTTTTTGGTTCTCATCTTCTCTACGGGGAAGAGGACGATCAATTTAGAAGGGAAAAGTCTTTCCCCTTTTGGTTCTCATCATGTATTCCCTATGAGTTTGGTGTATTTAACATTTTAGTTTAA

Coding sequence (CDS)

ATGGAAAGGTTAAGTGGCATATCTTATCTCCCCTGGATTATCGAGGGAGATTTTAACAAGATCTTTTTTGCTGATGAAAAGAGAGGAGCGGAAAGGAGCCAAAACCTCATGGAGGCATTCCGTGTGGCTTTGGGTAGATGCAATTTAGCAAATCTGGGAGCCCCTAGAAACATGTTCACTTGGATGAAAAGGGTGAGAGGGGGTACGACCATTGCAGAAAGACTGGACCGTTTCTTGGCAAACGACAAGTTTAGATCTTTGTTTGGAAATATTGGCATCGATCCATTCAGAACAATATTGAAGAAACATCAAGAAAATTCAAACAATCTCAACCCCCCTCCAATTCGAGAACCATTCGAGTCACCCGTGGAAGCCGTCAGACCCCAACTTTTGGAAATTAAACTATGTGCCGCCTGGTTCGAGAAGGACGACAAGGGTGGGATTGCGTGGACCATTTGTGACTCCAACAGGAATAAGATGCAACTACCTCTGGCTGTTGAATCAGATTACGTCGAGGTCGTGGGGGCTTTCAATCGCGAGCTTGAAGACCAATCGGAGCTTTGTTTTTTTGTTGAAGAAATCCAGTTGCTCTCGTCGTCGTTGGGTATCTCGTCTCTCTCCAAGTGCTCGAGGAAGAACAACTCTTTGGCTCACGATCTGGCTCGAGCGATAGCAAAAAATGGGAATTTCGGTTTTTTTGGTTCTCATCTTCTCTACGGGGAAGAGGACGATCAATTTAGAAGGGAAAAGTCTTTCCCCTTTTGGTTCTCATCATGTATTCCCTATGAGTTTGGTGTATTTAACATTTTAGTTTAA

Protein sequence

MERLSGISYLPWIIEGDFNKIFFADEKRGAERSQNLMEAFRVALGRCNLANLGAPRNMFTWMKRVRGGTTIAERLDRFLANDKFRSLFGNIGIDPFRTILKKHQENSNNLNPPPIREPFESPVEAVRPQLLEIKLCAAWFEKDDKGGIAWTICDSNRNKMQLPLAVESDYVEVVGAFNRELEDQSELCFFVEEIQLLSSSLGISSLSKCSRKNNSLAHDLARAIAKNGNFGFFGSHLLYGEEDDQFRREKSFPFWFSSCIPYEFGVFNILV

Homology

[Close]

BLAST of Lag0017704 vs. NCBI nr
Match: KAF4381998.1 (hypothetical protein G4B88_006630 [Cannabis sativa])

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-14
Identity = 57/175 (32.57%), Postives = 88/175 (50.29%), Query Frame = 0


Query: 3   RLSGISYLPWIIEGDFNKIFFADEKR-GAERSQNLMEAFRVALGRCNLANLGAPRNMFTW 62
           RL  +  LPWI  GDFN+I   +EK+ G++RS + M  F+ AL RC+LA+LG     FTW
Sbjct: 565 RLKDLFDLPWICGGDFNEILSINEKKGGSDRSMSAMTEFQNALDRCSLADLGFEGQCFTW 624

Query: 63  MKRVRGGTTIAERLDRFLANDKFRSLFGNIGIDPFRTILKKHQENSNNLNPPPIREPFES 122
           + + +GG  + ERLDR+  N ++  LF      PF  +L     NS++        P  +
Sbjct: 625 LNKRQGGAHVQERLDRYFCNQRWHDLF------PFVKVLNGDFLNSDH-------RPIVA 684

Query: 123 PVEAV-RPQLLEIKLCAAWFEKDDKGGIAWTICDSNRNKMQLPLAVESDYVEVVG 176
            +E V R Q  + K C  +     K      I + +   +  PLA +   +++ G
Sbjct: 685 TLENVSRRQRYDKKRCFRFETHWLKDPECQEIINRSWLSLDCPLANQDSLIDIFG 726

[Close]

BLAST of Lag0017704 vs. NCBI nr
Match: KAF4383622.1 (hypothetical protein F8388_014122 [Cannabis sativa])

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-14
Identity = 57/175 (32.57%), Postives = 88/175 (50.29%), Query Frame = 0


Query: 3   RLSGISYLPWIIEGDFNKIFFADEKR-GAERSQNLMEAFRVALGRCNLANLGAPRNMFTW 62
           RL  +  LPWI  GDFN+I   +EK+ G++RS + M  F+ AL RC+LA+LG     FTW
Sbjct: 589 RLKDLFDLPWICGGDFNEILSINEKKGGSDRSMSAMTEFQNALDRCSLADLGFEGQCFTW 648

Query: 63  MKRVRGGTTIAERLDRFLANDKFRSLFGNIGIDPFRTILKKHQENSNNLNPPPIREPFES 122
           + + +GG  + ERLDR+  N ++  LF      PF  +L     NS++        P  +
Sbjct: 649 LNKRQGGAHVQERLDRYFCNQRWHDLF------PFVKVLNGDFLNSDH-------RPIVA 708

Query: 123 PVEAV-RPQLLEIKLCAAWFEKDDKGGIAWTICDSNRNKMQLPLAVESDYVEVVG 176
            +E V R Q  + K C  +     K      I + +   +  PLA +   +++ G
Sbjct: 709 TLENVSRRQRYDKKRCFRFETHWLKDPECQEIINRSWLSLDCPLANQDSLIDIFG 750

[Close]

BLAST of Lag0017704 vs. NCBI nr
Match: KAF8391778.1 (hypothetical protein HHK36_022012 [Tetracentron sinense])

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-13
Identity = 70/243 (28.81%), Postives = 106/243 (43.62%), Query Frame = 0


Query: 1   MERLSGISYLPWIIEGDFNKIFFADEKRG-AERSQNLMEAFRVALGRCNLANLGAPRNMF 60
           M  LS    +PW+  GDFN+I  A+EK G  E++   M  F+ A+  C+L +LG   N F
Sbjct: 715 MRYLSRSYSMPWVCFGDFNEITCAEEKSGRVEKAAWKMRKFKEAILDCHLIDLGFEGNTF 774

Query: 61  TWMKRVRGGTTIAERLDRFLANDKFRSLFGNIGIDPFRTILKKHQENSNNLNPPPIREPF 120
           TW K+      + ERLDR +A   +  LF      PF T+  KH  + +  +  P+   F
Sbjct: 775 TWCKKRSREGNVRERLDRAMATSDWCFLF------PFTTV--KHL-SCHTSDHSPLLLAF 834

Query: 121 ESPVEAVRPQLLEIKLCAAWFEKDDKGGI---AWTICDS------------NRNKMQLPL 180
           +     +  +    +  A W    +   I   AWT C                 K  L L
Sbjct: 835 DKEAPKIARKKRSFRFEAIWIRSPECSEIIDSAWTGCHQVSAAVIEAIAAREGLKFALEL 894

Query: 181 AV-----ESDYVEVVGAFNRELEDQSELCFFVEEIQLLSSSLGISSLSKCSRKNNSLAHD 223
            +     ESD +  + A   + E+ S     +++++ L  S    S S   R+ NS+AH 
Sbjct: 895 GIQEVILESDSINTIHALTSQEENSSFESLVLDDVKTLRLSFHHCSFSHVHREGNSVAHC 948

[Close]

BLAST of Lag0017704 vs. NCBI nr
Match: KAF4347816.1 (hypothetical protein G4B88_012929 [Cannabis sativa])

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-12
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 3   RLSGISYLPWIIEGDFNKIFFADEKR-GAERSQNLMEAFRVALGRCNLANLGAPRNMFTW 62
           RL  +  LPWI  GDFN+I   +EK+ G++RS + M  F+ AL RC+LA+LG     FTW
Sbjct: 589 RLKDLFDLPWICGGDFNEILSINEKKGGSDRSMSAMTEFQNALDRCSLADLGFEGQCFTW 648

Query: 63  MKRVRGGTTIAERLDRFLANDKFRSLFGNIGIDPFRTILKKHQENSNN 110
           + + +GG  + ERLDR+  N ++  LF      PF  +L     NS++
Sbjct: 649 LNKRQGGAHVQERLDRYFCNQRWHDLF------PFVKVLNGDFLNSDH 690

[Close]

BLAST of Lag0017704 vs. NCBI nr
Match: XP_017613541.1 (PREDICTED: uncharacterized protein LOC108458646 [Gossypium arboreum])

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-12
Identity = 62/192 (32.29%), Postives = 88/192 (45.83%), Query Frame = 0


Query: 10  LPWIIEGDFNKIFFADEKRGA-ERSQNLMEAFRVALGRCNLANLGAPRNMFTWMKRVRGG 69
           LPWI+ GDFN+I ++ EK G  +R Q  MEAFR  L    L ++G   N FTW +     
Sbjct: 131 LPWIVCGDFNEIMYSFEKSGGIQREQGRMEAFREVLKESQLVDIGYSGNWFTWERGNLPE 190

Query: 70  TTIAERLDRFLANDKFRSLF--GNIGIDPFRT---------ILKKHQENSNNLNPPPIRE 129
           T I ERLDR +AN+K+ +LF  GNI   P+ T              +E  + +    I  
Sbjct: 191 TNIKERLDRGVANEKWMTLFPLGNICHLPYSTSDHRPLLLNTNSDEKERDDEMMAQIIDT 250

Query: 130 PFESPVEAVRPQLL-EIKLCAAWFEKDDKGGIAWTICDSNRNKMQLPLAVESDYVEVVGA 189
                +E  + +L  E +    W    DK    +  C S R +      +ESD       
Sbjct: 251 KIHLNMEIDKDELYWEQRARVNWLRFGDKNTGFFHKCASTRKRTNTIFRLESD------- 310

[Close]

BLAST of Lag0017704 vs. ExPASy TrEMBL
Match: A0A7J6GL46 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_014122 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 57/175 (32.57%), Postives = 88/175 (50.29%), Query Frame = 0


Query: 3   RLSGISYLPWIIEGDFNKIFFADEKR-GAERSQNLMEAFRVALGRCNLANLGAPRNMFTW 62
           RL  +  LPWI  GDFN+I   +EK+ G++RS + M  F+ AL RC+LA+LG     FTW
Sbjct: 589 RLKDLFDLPWICGGDFNEILSINEKKGGSDRSMSAMTEFQNALDRCSLADLGFEGQCFTW 648

Query: 63  MKRVRGGTTIAERLDRFLANDKFRSLFGNIGIDPFRTILKKHQENSNNLNPPPIREPFES 122
           + + +GG  + ERLDR+  N ++  LF      PF  +L     NS++        P  +
Sbjct: 649 LNKRQGGAHVQERLDRYFCNQRWHDLF------PFVKVLNGDFLNSDH-------RPIVA 708

Query: 123 PVEAV-RPQLLEIKLCAAWFEKDDKGGIAWTICDSNRNKMQLPLAVESDYVEVVG 176
            +E V R Q  + K C  +     K      I + +   +  PLA +   +++ G
Sbjct: 709 TLENVSRRQRYDKKRCFRFETHWLKDPECQEIINRSWLSLDCPLANQDSLIDIFG 750

[Close]

BLAST of Lag0017704 vs. ExPASy TrEMBL
Match: A0A7J6GGL8 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_006630 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 57/175 (32.57%), Postives = 88/175 (50.29%), Query Frame = 0


Query: 3   RLSGISYLPWIIEGDFNKIFFADEKR-GAERSQNLMEAFRVALGRCNLANLGAPRNMFTW 62
           RL  +  LPWI  GDFN+I   +EK+ G++RS + M  F+ AL RC+LA+LG     FTW
Sbjct: 565 RLKDLFDLPWICGGDFNEILSINEKKGGSDRSMSAMTEFQNALDRCSLADLGFEGQCFTW 624

Query: 63  MKRVRGGTTIAERLDRFLANDKFRSLFGNIGIDPFRTILKKHQENSNNLNPPPIREPFES 122
           + + +GG  + ERLDR+  N ++  LF      PF  +L     NS++        P  +
Sbjct: 625 LNKRQGGAHVQERLDRYFCNQRWHDLF------PFVKVLNGDFLNSDH-------RPIVA 684

Query: 123 PVEAV-RPQLLEIKLCAAWFEKDDKGGIAWTICDSNRNKMQLPLAVESDYVEVVG 176
            +E V R Q  + K C  +     K      I + +   +  PLA +   +++ G
Sbjct: 685 TLENVSRRQRYDKKRCFRFETHWLKDPECQEIINRSWLSLDCPLANQDSLIDIFG 726

[Close]

BLAST of Lag0017704 vs. ExPASy TrEMBL
Match: A0A7J6DPD3 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_012929 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-13
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 3   RLSGISYLPWIIEGDFNKIFFADEKR-GAERSQNLMEAFRVALGRCNLANLGAPRNMFTW 62
           RL  +  LPWI  GDFN+I   +EK+ G++RS + M  F+ AL RC+LA+LG     FTW
Sbjct: 589 RLKDLFDLPWICGGDFNEILSINEKKGGSDRSMSAMTEFQNALDRCSLADLGFEGQCFTW 648

Query: 63  MKRVRGGTTIAERLDRFLANDKFRSLFGNIGIDPFRTILKKHQENSNN 110
           + + +GG  + ERLDR+  N ++  LF      PF  +L     NS++
Sbjct: 649 LNKRQGGAHVQERLDRYFCNQRWHDLF------PFVKVLNGDFLNSDH 690

[Close]

BLAST of Lag0017704 vs. ExPASy TrEMBL
Match: A0A6P4MF11 (uncharacterized protein LOC108458646 OS=Gossypium arboreum OX=29729 GN=LOC108458646 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 62/192 (32.29%), Postives = 88/192 (45.83%), Query Frame = 0


Query: 10  LPWIIEGDFNKIFFADEKRGA-ERSQNLMEAFRVALGRCNLANLGAPRNMFTWMKRVRGG 69
           LPWI+ GDFN+I ++ EK G  +R Q  MEAFR  L    L ++G   N FTW +     
Sbjct: 131 LPWIVCGDFNEIMYSFEKSGGIQREQGRMEAFREVLKESQLVDIGYSGNWFTWERGNLPE 190

Query: 70  TTIAERLDRFLANDKFRSLF--GNIGIDPFRT---------ILKKHQENSNNLNPPPIRE 129
           T I ERLDR +AN+K+ +LF  GNI   P+ T              +E  + +    I  
Sbjct: 191 TNIKERLDRGVANEKWMTLFPLGNICHLPYSTSDHRPLLLNTNSDEKERDDEMMAQIIDT 250

Query: 130 PFESPVEAVRPQLL-EIKLCAAWFEKDDKGGIAWTICDSNRNKMQLPLAVESDYVEVVGA 189
                +E  + +L  E +    W    DK    +  C S R +      +ESD       
Sbjct: 251 KIHLNMEIDKDELYWEQRARVNWLRFGDKNTGFFHKCASTRKRTNTIFRLESD------- 310

[Close]

BLAST of Lag0017704 vs. ExPASy TrEMBL
Match: A0A2N9I5P9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47242 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-11
Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 10  LPWIIEGDFNKIFFADEKRGAE-RSQNLMEAFRVALGRCNLANLGAPRNMFTWMKRVRGG 69
           LPW++ GDFN+I   DEK G E RS   M AFR AL  C+L +LG     FTW  R   G
Sbjct: 613 LPWLVMGDFNEITSLDEKWGREDRSLAQMVAFREALSDCSLRDLGYRGPDFTWSNRRENG 672

Query: 70  TTIAERLDRFLANDKFRSLFGNIGIDPFRTILKKHQENSNNLNPPPIRE 118
             +  RLDR +AND + SLF    +     +   H     + NPP I++
Sbjct: 673 ALVRVRLDRCVANDAWISLFPRAQVFHIVVVASDHMGIITDFNPPQIKQ 721

The following BLAST results are available for this feature:

BLAST of Lag0017704 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4381998.1	3.1e-14	32.57	hypothetical protein G4B88_006630 [Cannabis sativa]	[more]
KAF4383622.1	3.1e-14	32.57	hypothetical protein F8388_014122 [Cannabis sativa]	[more]
KAF8391778.1	7.7e-13	28.81	hypothetical protein HHK36_022012 [Tetracentron sinense]	[more]
KAF4347816.1	1.0e-12	40.74	hypothetical protein G4B88_012929 [Cannabis sativa]	[more]
XP_017613541.1	2.2e-12	32.29	PREDICTED: uncharacterized protein LOC108458646 [Gossypium arboreum]	[more]

BLAST of Lag0017704 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017704 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6GL46	1.5e-14	32.57	CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_014122 P...	[more]
A0A7J6GGL8	1.5e-14	32.57	CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_006630 P...	[more]
A0A7J6DPD3	4.9e-13	40.74	CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_012929 P...	[more]
A0A6P4MF11	1.1e-12	32.29	uncharacterized protein LOC108458646 OS=Gossypium arboreum OX=29729 GN=LOC108458...	[more]
A0A2N9I5P9	1.2e-11	41.28	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47242 PE=4 SV=1	[more]

BLAST of Lag0017704 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..105 e-value: 3.0E-6 score: 29.2
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 3..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017704.1	Lag0017704.1	mRNA