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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGCATCTTGGAACGGATATAGATTGGAGGCAACAAAAAGTAGTTGTGATTGAAGAGAAACAGAGCGACTCCGAAAGCTCCAACGAAAGCAGCGACCATGAAGACAAAAAAGAGAAGGCGAAATTGATCGAAGTCCAGGATCCGACGAAAAACAGAGACACCGTCGGAAATAATCGATTGTGGGAGAAGAACCATCGAGAGAAATCTCGGCCCTCACTTCAAACAAACATGAAGAGAAATCTTCAAGAATTGTTGTTGATAGATGATTCTGTGTGTTGGGTGTTTTGAAGGAACTAAGTTTTGCCATTGCAGTTCTTCAAGGATTTTGAATGTTAACTATGTTTCGGATACTTGTATAAGAGTCTGAATTCTTGTTGAGTCACATGTTTGAAATGGCTTTGACTATGAAAGAATCACACTGAGAATACTGAATTTAATCCTTATTAGAGGGGAAATTGATTGAAATTTTAAAATGCCACTTCTTTTTTTTTTTTTTTTTTTTTTTTTATTATTATTATTATTTTTAATCGTGAAATCCAAAGACTTGCAACTCCTATCCTCTGCAATGGCCACTGGAGTGCTATGGGGCAAGGCGATTGTGCTTTGACCAACGGCGGGACTACAACAACAACATCGGGTCCTCTCAAAACTCTCCAGCAATTGGGTACTGTGATGTGA mRNA sequence ATGCATCTTGGAACGGATATAGATTGGAGGCAACAAAAAGTAGTTGTGATTGAAGAGAAACAGAGCGACTCCGAAAGCTCCAACGAAAGCAGCGACCATGAAGACAAAAAAGAGAAGGCGAAATTGATCGAAGTCCAGGATCCGACGAAAAACAGAGACACCGTCGGAAATAATCGATTGTGGGAGAAGAACCATCGAGAGAAATCTCGGCCCTCACTTCAAACAAACATGAAGAGAAATCTTCAAGAATTGTTGTTGATAGATGATTCTGTGTGTTGGGTACTTGCAACTCCTATCCTCTGCAATGGCCACTGGAGTGCTATGGGGCAAGGCGATTGTGCTTTGACCAACGGCGGGACTACAACAACAACATCGGGTCCTCTCAAAACTCTCCAGCAATTGGGTACTGTGATGTGA Coding sequence (CDS) ATGCATCTTGGAACGGATATAGATTGGAGGCAACAAAAAGTAGTTGTGATTGAAGAGAAACAGAGCGACTCCGAAAGCTCCAACGAAAGCAGCGACCATGAAGACAAAAAAGAGAAGGCGAAATTGATCGAAGTCCAGGATCCGACGAAAAACAGAGACACCGTCGGAAATAATCGATTGTGGGAGAAGAACCATCGAGAGAAATCTCGGCCCTCACTTCAAACAAACATGAAGAGAAATCTTCAAGAATTGTTGTTGATAGATGATTCTGTGTGTTGGGTACTTGCAACTCCTATCCTCTGCAATGGCCACTGGAGTGCTATGGGGCAAGGCGATTGTGCTTTGACCAACGGCGGGACTACAACAACAACATCGGGTCCTCTCAAAACTCTCCAGCAATTGGGTACTGTGATGTGA Protein sequence MHLGTDIDWRQQKVVVIEEKQSDSESSNESSDHEDKKEKAKLIEVQDPTKNRDTVGNNRLWEKNHREKSRPSLQTNMKRNLQELLLIDDSVCWVLATPILCNGHWSAMGQGDCALTNGGTTTTTSGPLKTLQQLGTVM
Homology
BLAST of Lag0017680 vs. NCBI nr
Match: XP_022965847.1 (heavy metal-associated isoprenylated plant protein 36 [Cucurbita maxima]) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04 Identity = 43/90 (47.78%), Postives = 46/90 (51.11%), Query Frame = 0
Query: 5 TDIDWRQQKVVV--------------------------------------IEEKQSDSES 57
TDIDWRQQKVVV +EKQSDSES
Sbjct: 54 TDIDWRQQKVVVKGNVESETLIKKLLKTGKHAELWPENSDSKVKKKGKSKKKEKQSDSES 113
BLAST of Lag0017680 vs. NCBI nr
Match: XP_022937460.1 (heavy metal-associated isoprenylated plant protein 36 [Cucurbita moschata]) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04 Identity = 43/90 (47.78%), Postives = 46/90 (51.11%), Query Frame = 0
Query: 5 TDIDWRQQKVVV--------------------------------------IEEKQSDSES 57
TDIDWRQQKVVV +EKQSDSES
Sbjct: 54 TDIDWRQQKVVVKGNVESETLIKKLLKTGKHAELWPENSDSKGKKKGKSKKKEKQSDSES 113
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022965847.1 | 1.1e-04 | 47.78 | heavy metal-associated isoprenylated plant protein 36 [Cucurbita maxima] | [more] |
| XP_022937460.1 | 1.1e-04 | 47.78 | heavy metal-associated isoprenylated plant protein 36 [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 56..73 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 14..48 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 14..74 |
Relationships
The following mRNA feature(s) are a part of this gene:
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