Lag0017680 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017680
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	heavy metal-associated isoprenylated plant protein 36
Location	chr5: 6740683 .. 6741360 (-)
RNA-Seq Expression	Lag0017680
Synteny	Lag0017680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCTTGGAACGGATATAGATTGGAGGCAACAAAAAGTAGTTGTGATTGAAGAGAAACAGAGCGACTCCGAAAGCTCCAACGAAAGCAGCGACCATGAAGACAAAAAAGAGAAGGCGAAATTGATCGAAGTCCAGGATCCGACGAAAAACAGAGACACCGTCGGAAATAATCGATTGTGGGAGAAGAACCATCGAGAGAAATCTCGGCCCTCACTTCAAACAAACATGAAGAGAAATCTTCAAGAATTGTTGTTGATAGATGATTCTGTGTGTTGGGTGTTTTGAAGGAACTAAGTTTTGCCATTGCAGTTCTTCAAGGATTTTGAATGTTAACTATGTTTCGGATACTTGTATAAGAGTCTGAATTCTTGTTGAGTCACATGTTTGAAATGGCTTTGACTATGAAAGAATCACACTGAGAATACTGAATTTAATCCTTATTAGAGGGGAAATTGATTGAAATTTTAAAATGCCACTTCTTTTTTTTTTTTTTTTTTTTTTTTTATTATTATTATTATTTTTAATCGTGAAATCCAAAGACTTGCAACTCCTATCCTCTGCAATGGCCACTGGAGTGCTATGGGGCAAGGCGATTGTGCTTTGACCAACGGCGGGACTACAACAACAACATCGGGTCCTCTCAAAACTCTCCAGCAATTGGGTACTGTGATGTGA

mRNA sequence

ATGCATCTTGGAACGGATATAGATTGGAGGCAACAAAAAGTAGTTGTGATTGAAGAGAAACAGAGCGACTCCGAAAGCTCCAACGAAAGCAGCGACCATGAAGACAAAAAAGAGAAGGCGAAATTGATCGAAGTCCAGGATCCGACGAAAAACAGAGACACCGTCGGAAATAATCGATTGTGGGAGAAGAACCATCGAGAGAAATCTCGGCCCTCACTTCAAACAAACATGAAGAGAAATCTTCAAGAATTGTTGTTGATAGATGATTCTGTGTGTTGGGTACTTGCAACTCCTATCCTCTGCAATGGCCACTGGAGTGCTATGGGGCAAGGCGATTGTGCTTTGACCAACGGCGGGACTACAACAACAACATCGGGTCCTCTCAAAACTCTCCAGCAATTGGGTACTGTGATGTGA

Coding sequence (CDS)

ATGCATCTTGGAACGGATATAGATTGGAGGCAACAAAAAGTAGTTGTGATTGAAGAGAAACAGAGCGACTCCGAAAGCTCCAACGAAAGCAGCGACCATGAAGACAAAAAAGAGAAGGCGAAATTGATCGAAGTCCAGGATCCGACGAAAAACAGAGACACCGTCGGAAATAATCGATTGTGGGAGAAGAACCATCGAGAGAAATCTCGGCCCTCACTTCAAACAAACATGAAGAGAAATCTTCAAGAATTGTTGTTGATAGATGATTCTGTGTGTTGGGTACTTGCAACTCCTATCCTCTGCAATGGCCACTGGAGTGCTATGGGGCAAGGCGATTGTGCTTTGACCAACGGCGGGACTACAACAACAACATCGGGTCCTCTCAAAACTCTCCAGCAATTGGGTACTGTGATGTGA

Protein sequence

MHLGTDIDWRQQKVVVIEEKQSDSESSNESSDHEDKKEKAKLIEVQDPTKNRDTVGNNRLWEKNHREKSRPSLQTNMKRNLQELLLIDDSVCWVLATPILCNGHWSAMGQGDCALTNGGTTTTTSGPLKTLQQLGTVM

Homology

[Close]

BLAST of Lag0017680 vs. NCBI nr
Match: XP_022965847.1 (heavy metal-associated isoprenylated plant protein 36 [Cucurbita maxima])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 43/90 (47.78%), Postives = 46/90 (51.11%), Query Frame = 0


Query: 5   TDIDWRQQKVVV--------------------------------------IEEKQSDSES 57
           TDIDWRQQKVVV                                       +EKQSDSES
Sbjct: 54  TDIDWRQQKVVVKGNVESETLIKKLLKTGKHAELWPENSDSKVKKKGKSKKKEKQSDSES 113

[Close]

BLAST of Lag0017680 vs. NCBI nr
Match: XP_022937460.1 (heavy metal-associated isoprenylated plant protein 36 [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 43/90 (47.78%), Postives = 46/90 (51.11%), Query Frame = 0


Query: 5   TDIDWRQQKVVV--------------------------------------IEEKQSDSES 57
           TDIDWRQQKVVV                                       +EKQSDSES
Sbjct: 54  TDIDWRQQKVVVKGNVESETLIKKLLKTGKHAELWPENSDSKGKKKGKSKKKEKQSDSES 113

The following BLAST results are available for this feature:

BLAST of Lag0017680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965847.1	1.1e-04	47.78	heavy metal-associated isoprenylated plant protein 36 [Cucurbita maxima]	[more]
XP_022937460.1	1.1e-04	47.78	heavy metal-associated isoprenylated plant protein 36 [Cucurbita moschata]	[more]

BLAST of Lag0017680 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017680.1	Lag0017680.1	mRNA