Lag0017659 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017659
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationchr5: 6456294 .. 6457276 (+)
RNA-Seq ExpressionLag0017659
SyntenyLag0017659
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCTGCTACTCAACCTCCTTCTACTCGTCCTGCTTTTAATGGTGGCAGGGGACACGGTCACAGCCGCAACAATGGTCGTGGACGTTTTCCTCCTCAGAACGGAAATGACAGAGGTCGTGTCCCTAATTTTACAAATTCTTTATCTACTGACAATCGTCCCTCCTGTCAAATTTGTCAGCGACCAAGTCACAGCGCCTTGGATTGTTATAATAGGATGAACTATCACTATCAGGGTCGTCATCCACCACCTCAACTTGCTGCTATGGTGGCCTCACAAAACAACTCTTATTTGAATATGACGAATCCCTCTGCTATTCCATTTGTTTTGCCGTGGTTTGTTGATTTTGGGTGCAATGCCCACGTTACAGCTGATCTTGGTAACTTAATGGTGGCTTCTGAATATAATGGCGAGAAGCATATTTCTGTTGGTAGTGGGCAAAGTCTCCCTATAACTCACACAGGTTCTGACACATTTCCTATTTCATCTACTTCCTCTTTGTCCTTATCAAATCTTCTCTGTGCGTGCCTCATATCTCAAATAATCTTTGTCTATATATCAACTATGTGTCGACAATAATTGCATTGTTATTTTTTATTCTGGTCGATTCTCTATTCAGGACAAAACTTTGGGGTGCCTTCTCTTCCAAGGACCTAATAAAAAATGGTCTCTATCCTATCACTCCATCTGTTGCCCCTTCCATGTCTACCAACTCATCAATCTCTTCTCCTGTTGCTCATATTGGCGTCAAGTCATCCTCTACTCTATGGCATAATCAGTTAGGCCATCCTAACTCGCAAGTTCTCCATACGGTTCTTCGTCATCTTAGTTTACCTATATGTAATAACAATCGTTGTGTCTACGAGTTTTGTCTTTCTAGTAAGATGCATAAACTTCATTTTCCAAAATATACTACGTTTTCCATGTATCCATTGGAGTTGCTTCATAGTGATGTATATTGTATGGGGTCCAACTCCTGA

mRNA sequence

ATGTTTGCTGCTACTCAACCTCCTTCTACTCGTCCTGCTTTTAATGGTGGCAGGGGACACGGTCACAGCCGCAACAATGGTCGTGGACGTTTTCCTCCTCAGAACGGAAATGACAGAGGTCGTGTCCCTAATTTTACAAATTCTTTATCTACTGACAATCGTCCCTCCTGTCAAATTTGTCAGCGACCAAGTCACAGCGCCTTGGATTGTTATAATAGGATGAACTATCACTATCAGGGTCGTCATCCACCACCTCAACTTGCTGCTATGGTGGCCTCACAAAACAACTCTTATTTGAATATGACGAATCCCTCTGCTATTCCATTTGTTTTGCCGTGGTTTGTTGATTTTGGGTGCAATGCCCACGTTACAGCTGATCTTGGTAACTTAATGGTGGCTTCTGAATATAATGGCGAGAAGCATATTTCTGTTGGTAGTGGGCAAAGTCTCCCTATAACTCACACAGGTTCTGACACATTTCCTATTTCATCTACTTCCTCTTTGTCCTTATCAAATCTTCTCTGTGCGACAAAACTTTGGGGTGCCTTCTCTTCCAAGGACCTAATAAAAAATGGTCTCTATCCTATCACTCCATCTGTTGCCCCTTCCATGTCTACCAACTCATCAATCTCTTCTCCTGTTGCTCATATTGGCGTCAAGTCATCCTCTACTCTATGGCATAATCAGTTAGGCCATCCTAACTCGCAAGTTCTCCATACGGTTCTTCGTCATCTTAGTTTACCTATATGTAATAACAATCGTTGTGTCTACGAGTTTTGTCTTTCTAGTAAGATGCATAAACTTCATTTTCCAAAATATACTACGTTTTCCATGTATCCATTGGAGTTGCTTCATAGTGATGTATATTGTATGGGGTCCAACTCCTGA

Coding sequence (CDS)

ATGTTTGCTGCTACTCAACCTCCTTCTACTCGTCCTGCTTTTAATGGTGGCAGGGGACACGGTCACAGCCGCAACAATGGTCGTGGACGTTTTCCTCCTCAGAACGGAAATGACAGAGGTCGTGTCCCTAATTTTACAAATTCTTTATCTACTGACAATCGTCCCTCCTGTCAAATTTGTCAGCGACCAAGTCACAGCGCCTTGGATTGTTATAATAGGATGAACTATCACTATCAGGGTCGTCATCCACCACCTCAACTTGCTGCTATGGTGGCCTCACAAAACAACTCTTATTTGAATATGACGAATCCCTCTGCTATTCCATTTGTTTTGCCGTGGTTTGTTGATTTTGGGTGCAATGCCCACGTTACAGCTGATCTTGGTAACTTAATGGTGGCTTCTGAATATAATGGCGAGAAGCATATTTCTGTTGGTAGTGGGCAAAGTCTCCCTATAACTCACACAGGTTCTGACACATTTCCTATTTCATCTACTTCCTCTTTGTCCTTATCAAATCTTCTCTGTGCGACAAAACTTTGGGGTGCCTTCTCTTCCAAGGACCTAATAAAAAATGGTCTCTATCCTATCACTCCATCTGTTGCCCCTTCCATGTCTACCAACTCATCAATCTCTTCTCCTGTTGCTCATATTGGCGTCAAGTCATCCTCTACTCTATGGCATAATCAGTTAGGCCATCCTAACTCGCAAGTTCTCCATACGGTTCTTCGTCATCTTAGTTTACCTATATGTAATAACAATCGTTGTGTCTACGAGTTTTGTCTTTCTAGTAAGATGCATAAACTTCATTTTCCAAAATATACTACGTTTTCCATGTATCCATTGGAGTTGCTTCATAGTGATGTATATTGTATGGGGTCCAACTCCTGA

Protein sequence

MFAATQPPSTRPAFNGGRGHGHSRNNGRGRFPPQNGNDRGRVPNFTNSLSTDNRPSCQICQRPSHSALDCYNRMNYHYQGRHPPPQLAAMVASQNNSYLNMTNPSAIPFVLPWFVDFGCNAHVTADLGNLMVASEYNGEKHISVGSGQSLPITHTGSDTFPISSTSSLSLSNLLCATKLWGAFSSKDLIKNGLYPITPSVAPSMSTNSSISSPVAHIGVKSSSTLWHNQLGHPNSQVLHTVLRHLSLPICNNNRCVYEFCLSSKMHKLHFPKYTTFSMYPLELLHSDVYCMGSNS
Homology
BLAST of Lag0017659 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 8.6e-34
Identity = 91/166 (54.82%), Postives = 109/166 (65.66%), Query Frame = 0

Query: 1   MFAAT-QPPSTRPAFNGGRGH--GHSRNNGRGR--FPPQNGND-RGRVP-NFTNSLSTDN 60
           +FA++ Q  +   AF+  + H  G  +NNGRG+  F P   N  RGR   NF  S   DN
Sbjct: 263 LFASSPQSQNRTSAFHPNQSHDRGRGKNNGRGKANFAPTFTNQGRGRSSGNFFTSFQADN 322

Query: 61  RPSCQICQRPSHSALDCYNRMNYHYQGRHPPPQLAAMVASQNNSYLNMTNPSAIPFVLPW 120
           R  CQIC +  H+ALDCYNRMN+H+QGRHPPPQLAAMVA QNNSYL + N S       W
Sbjct: 323 RSPCQICGKLGHTALDCYNRMNFHFQGRHPPPQLAAMVAVQNNSYLAVGNSSP----TTW 382

Query: 121 FVDFGCNAHVTADLGNL---MVASEYNGEKHISVGSGQSLPITHTG 157
             D  CN H+TADL NL    +AS+YNGE++ISVGSGQS PITH G
Sbjct: 383 LADSECNTHMTADLSNLSIASIASDYNGEENISVGSGQSFPITHFG 424

BLAST of Lag0017659 vs. NCBI nr
Match: RVW87886.1 (Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera])

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-33
Identity = 117/326 (35.89%), Postives = 162/326 (49.69%), Query Frame = 0

Query: 16  GGRGHGH--SRNNGRGRFP-----PQNGNDRGRVPNFTNSLS------TDNRPSCQICQR 75
           G R H +  SR++G  +FP     P +   R  +P+   S S      + +R  CQIC+R
Sbjct: 250 GPRSHNNNRSRSSGTSKFPGSVPVPSSSPFRQPLPHLPASSSPPVSHASRSRSPCQICKR 309

Query: 76  PSHSALDCYNRMNYHYQGRHPPPQLAAMVASQNNSYLNMTNPSAIPFVLPWFVDFGCNAH 135
            +H ALDCYNRMNY +QGRHPP +LAAMVA  N +YLN            W+ D G N H
Sbjct: 310 ENHQALDCYNRMNYAFQGRHPPTELAAMVAEANTTYLNQHQ---------WYADSGANIH 369

Query: 136 VTADLGNLMVASEYNGEKHISVGSGQSLPITHTGSDTF---------------PISSTSS 195
           VT+D  NL ++  Y G   + VG+G  L I+ T + T                P +S   
Sbjct: 370 VTSDAANLAISQPYEGPDTVGVGNGAGLIISRTSTATIKTPSSTLALIDVAYCPQASAHL 429

Query: 196 LSLSNLLCAT-----KLWGA-FSSKDL----------IKNGLYPITPSVAPSMSTNSSIS 255
           LS+ N  C       +L G+ FS KDL             GLYPI         ++S   
Sbjct: 430 LSI-NKFCKDNNVLFELTGSDFSVKDLKTGETLMTGPSDRGLYPIN----LQQLSSSKFH 489

Query: 256 SPVAHIGVKSSSTLWHNQLGHPNSQVLHTVLRHLSLPICN--NNRCVYEFCLSSKMHKLH 296
           +    +GVK+S+  WH +LGHP+S  LH VL + SLP+ +  + + + E C   K  +L 
Sbjct: 490 AFSMIVGVKASTATWHCRLGHPSSSTLHHVLHNYSLPVSDSFHKKSICESCQLGKSKQLP 549

BLAST of Lag0017659 vs. NCBI nr
Match: RVW77387.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-33
Identity = 117/326 (35.89%), Postives = 161/326 (49.39%), Query Frame = 0

Query: 16  GGRGH--GHSRNNGRGRFP-----PQNGNDRGRVPNFTNSLS------TDNRPSCQICQR 75
           G R H    SR++G  +FP     P +   R  +P+   S S      + +R  CQIC+R
Sbjct: 250 GPRSHNINRSRSSGTSKFPGSVPVPSSSPFRQPLPHLPASSSPPVSHASRSRSPCQICKR 309

Query: 76  PSHSALDCYNRMNYHYQGRHPPPQLAAMVASQNNSYLNMTNPSAIPFVLPWFVDFGCNAH 135
            +H ALDCYNRMNY +QGRHPP +LAAMVA  N +YLN            W+ D G N H
Sbjct: 310 ENHQALDCYNRMNYAFQGRHPPTELAAMVAEANTTYLNQHQ---------WYADSGANIH 369

Query: 136 VTADLGNLMVASEYNGEKHISVGSGQSLPITHTGSDTF---------------PISSTSS 195
           VT+D  NL ++  Y G   + VG+G  L I+ TG+ T                P +S   
Sbjct: 370 VTSDAANLAISQPYEGPDTVGVGNGAGLIISRTGTATIKTPSSTLALNDVAYCPQASAHL 429

Query: 196 LSLSNLLCAT-----KLWGA-FSSKDL----------IKNGLYPITPSVAPSMSTNSSIS 255
           LS+ N  C       +L G+ FS KDL             GLYPI         ++S   
Sbjct: 430 LSI-NKFCKDNNVLFELTGSDFSVKDLKTGKTLMTGPSDRGLYPIN----LQQLSSSKFH 489

Query: 256 SPVAHIGVKSSSTLWHNQLGHPNSQVLHTVLRHLSLPICN--NNRCVYEFCLSSKMHKLH 296
           +    +GVK+S+  WH +LGHP+S  LH VL + SLP+ +  + + + E C   K  +L 
Sbjct: 490 AFSMIVGVKASTATWHYRLGHPSSSTLHHVLHNYSLPVSDSFHKKSICESCQLGKSKQLP 549

BLAST of Lag0017659 vs. NCBI nr
Match: KAF8394586.1 (hypothetical protein HHK36_020800 [Tetracentron sinense])

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-32
Identity = 107/306 (34.97%), Postives = 148/306 (48.37%), Query Frame = 0

Query: 16  GGRGHGHSRNNGRGRFPPQNGNDRGRV-PNFTNSLSTDNRPSCQICQRPSHSALDCYNRM 75
           G RG  + R  GRGR      N  GR  P+  +S    N PSCQIC R  HSALDC++R+
Sbjct: 93  GSRGSSYFRGRGRGR------NHGGRANPSNNHSTKPSNAPSCQICNRVGHSALDCFHRL 152

Query: 76  NYHYQGRHPPPQLAAMVASQNNSYLNMTNPSAIPFVLPWFVDFGCNAHVTADLGNLMVAS 135
           +  +QGR PPP+L AM A + +S               WF D G   HVTADL NL + S
Sbjct: 153 DLSFQGRQPPPKLQAMAAMRQDS--------------TWFTDTGATNHVTADLNNLSLHS 212

Query: 136 EYNGEKHISVGSGQSLPITHTGSDTFPISSTSSLSLSNLL---CATK------------- 195
           +Y G  +++VG+G+ L I H GS ++  S+ S+  + ++L   C TK             
Sbjct: 213 DYEGSDNLTVGNGKGLHIEHIGSTSYS-SNGSTFHMQDILHVPCITKNLLSVSQFSKDND 272

Query: 196 -----LWGAFSSKD----------LIKNGLYPITPSVAPSMSTNSSISSPVAHIGVKSSS 255
                    FS KD              GLYP+          N   SSP A      SS
Sbjct: 273 CHFVFTSSGFSVKDNKSGKILFQGRSSKGLYPLH---FQPHDKNKPYSSPSAFTSSTVSS 332

Query: 256 TLWHNQLGHPNSQVLHTVLRHLSLPICNNNRCVYEFCLSSKMHKLHFPKYTTFSMYPLEL 290
           ++WH++LGHP+ Q L  V  H+ L   + ++ +   C   K  +L F    + S YPLEL
Sbjct: 333 SVWHHRLGHPSHQTLQQVAPHIHLGRSSQHQTICSSCQMGKSSRLPFQLSDSISQYPLEL 374

BLAST of Lag0017659 vs. NCBI nr
Match: KAB5527608.1 (hypothetical protein DKX38_021455 [Salix brachista])

HSP 1 Score: 150.2 bits (378), Expect = 2.8e-32
Identity = 88/231 (38.10%), Postives = 128/231 (55.41%), Query Frame = 0

Query: 53  NRPSCQICQRPSHSALDCYNRMNYHYQGRHPPPQLAAMVASQNNSYLNMTNPSAIPFVLP 112
           +R  CQIC+R  H ALDC+NRMNY YQGRHPP +LAAMVA  N +YLN            
Sbjct: 295 SRSPCQICRREGHQALDCFNRMNYSYQGRHPPTELAAMVAEANTTYLNQNQ--------- 354

Query: 113 WFVDFGCNAHVTADLGNLMVASEYNGEKHISVGSGQSLPITHTGSDTFPISSTSSLSLSN 172
           W+ D G N HVT+D+ NL  +  Y G++ + VG+G  L I+HTG+    ++ +S L+L +
Sbjct: 355 WYADSGANIHVTSDVANLDNSQPYEGDESVGVGNGTGLNISHTGTAAI-LTPSSVLTLKD 414

Query: 173 LLCAT--------------------KLWGA-FSSKDLI----------KNGLYPITPSVA 232
           ++C                      +L G  FS KD++          +NGLYPI     
Sbjct: 415 VVCCPQASAQLLSINKFCKDNNVLFELTGTHFSVKDMLTGNTLLTGPSENGLYPIN---- 474

Query: 233 PSMSTNSSISSPVAHIGVKSSSTLWHNQLGHPNSQVLHTVLRHLSLPICNN 253
               ++S   +    +GVK+S+++WH +LGHP+++ L  VL + SLP+ NN
Sbjct: 475 LRQLSSSKFQALTMTVGVKASTSIWHCRLGHPSAKTLSLVLSNFSLPLTNN 511

BLAST of Lag0017659 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-16
Identity = 97/322 (30.12%), Postives = 138/322 (42.86%), Query Frame = 0

Query: 18  RGHGHSRN-NGRG---RFPPQNGNDRGRVPNFTNSLSTDNRPS-----CQICQRPSHSAL 77
           R    +RN N RG    +   N       P+ + S S + +P      CQIC    HSA 
Sbjct: 210 RNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAK 269

Query: 78  DC-----YNRMNYHYQGRHP--PPQLAAMVASQNNSYLNMTNPSAIPFVLPWFVDFGCNA 137
            C     +       Q   P  P Q  A +A   NS  N  N         W +D G   
Sbjct: 270 RCPQLHQFQSTTNQQQSTSPFTPWQPRANLAV--NSPYNANN---------WLLDSGATH 329

Query: 138 HVTADLGNLMVASEYNGEKHISVGSGQSLPITHTGSDTFPISSTS-----SLSLSNL--- 197
           H+T+D  NL     Y G   + +  G ++PITHTGS + P SS S      L + N+   
Sbjct: 330 HITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKN 389

Query: 198 ------LCATK------LWGAFSSKDL----------IKNGLY--PITPSVAPSMSTNSS 257
                 LC T          +F  KDL           K+ LY  PI  S A SM     
Sbjct: 390 LISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSM----- 449

Query: 258 ISSPVAHIGVKSSSTLWHNQLGHPNSQVLHTVLRHLSLPICNNNRCVYEF--CLSSKMHK 290
            +SP +    K++ + WH++LGHP+  +L++V+ + SLP+ N +  +     C  +K HK
Sbjct: 450 FASPCS----KATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHK 509

BLAST of Lag0017659 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-13
Identity = 81/310 (26.13%), Postives = 127/310 (40.97%), Query Frame = 0

Query: 15  NGGRGHGHSRNNGRGRFPPQNGNDRGRVPNFTNSLSTDNRPSCQICQRPSHSALDCYNRM 74
           NG R + +   N      P   +     PN  N+ S      CQIC    HSA  C    
Sbjct: 239 NGNRNNRYDNRNNNNNSKPWQQSSTNFHPN--NNQSKPYLGKCQICGVQGHSAKRCSQLQ 298

Query: 75  NY--HYQGRHPPPQLAAMVASQNNSYLNMTNPSAIPFVLPWFVDFGCNAHVTADLGNLMV 134
           ++      + PP   +     Q  + L + +P +      W +D G   H+T+D  NL +
Sbjct: 299 HFLSSVNSQQPP---SPFTPWQPRANLALGSPYSSN---NWLLDSGATHHITSDFNNLSL 358

Query: 135 ASEYNGEKHISVGSGQSLPITHTGSDTFPISSTSSLSLSNLLCATKLW------------ 194
              Y G   + V  G ++PI+HTGS +    S   L+L N+L    +             
Sbjct: 359 HQPYTGGDDVMVADGSTIPISHTGSTSLSTKS-RPLNLHNILYVPNIHKNLISVYRLCNA 418

Query: 195 ---------GAFSSKDL----------IKNGLYPITPSVAPSMSTNSSISSPVAHIGVKS 254
                     +F  KDL           K+ LY    + +  +S  +S SS   H     
Sbjct: 419 NGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATH----- 478

Query: 255 SSTLWHNQLGHPNSQVLHTVLRHLSLPICNNNRCVYEF--CLSSKMHKLHFPKYTTFSMY 290
             + WH +LGHP   +L++V+ + SL + N +        CL +K +K+ F + T  S  
Sbjct: 479 --SSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTR 532

BLAST of Lag0017659 vs. ExPASy TrEMBL
Match: A0A2N9E6N0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2498 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.0e-37
Identity = 119/316 (37.66%), Postives = 166/316 (52.53%), Query Frame = 0

Query: 16  GGRGHGH---SRNNGRGRFPPQN----GNDRGRVPNFTNSLSTDNRPSCQICQRPSHSAL 75
           GGRG+      RN+ RG F   +     N  G  PN+ NS  T  RP CQIC +  H AL
Sbjct: 661 GGRGNNRGRGGRNSNRGGFSSNSQGFASNPLGFSPNY-NSSGTSQRPQCQICGKTGHLAL 720

Query: 76  DCYNRMNYHYQGRHPPPQLAAMVASQNNSYLN--MTNPSAIPFVLPWFVDFGCNAHVTAD 135
           DC++RMN+ YQGR PP +LAA+ ++  +S +N   +N S+      W  D G   H T D
Sbjct: 721 DCFHRMNFAYQGRQPPAKLAAIASTAMSSAINAPYSNQSS------WISDTGATDHFTPD 780

Query: 136 LGNLMVASEYNGEKHISVGSGQSLPITHTGSDTFPISS----------TSSLSLSNLLCA 195
           + ++    +Y G   ++VG+GQSLPITHTG+     SS            S+S SNLL  
Sbjct: 781 ISHIPDCHDYRGTDQVTVGNGQSLPITHTGNSQLYASSHLFKLRKILHVPSMS-SNLLSV 840

Query: 196 TKLW-----------GAFSSKDL----------IKNGLYPITPSVAPSMSTNSSISSPVA 255
            +               F  KDL           ++GLYPI  ++ P+ S     +S   
Sbjct: 841 HRFCKDNNASFYFDASKFRIKDLSSGRLLYNGPSEHGLYPIHGAILPASSPKLFHTS--- 900

Query: 256 HIGVKSSSTLWHNQLGHPNSQVLHTVLRH-LSLPICN-NNRCVYEFCLSSKMHKLHFPKY 290
              V SSS LWHN+LGHP   V+  VL++ L LP+ N  + C++  CL  KMHKL FP +
Sbjct: 901 --AVSSSSQLWHNRLGHPQQSVVKHVLQNKLRLPVSNTTSLCIH--CLEGKMHKLPFPNF 960

BLAST of Lag0017659 vs. ExPASy TrEMBL
Match: A0A2N9FKJ8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15492 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 119/315 (37.78%), Postives = 166/315 (52.70%), Query Frame = 0

Query: 1   MFAATQPP----STRPAF--NGGRGHGHSRNN---GRGRFPPQNGNDRGRVPNFTNSLST 60
           MFA+  P     +++ +F  N  +  G  RNN   GRGRF   N   +   PN ++S  +
Sbjct: 206 MFASAAPNNRNFNSQSSFYVNSSQARGRGRNNSQRGRGRFNHNNQYSQPNAPNQSHSQYS 265

Query: 61  D--------NRPSCQICQRPSHSALDCYNRMNYHYQGRHPPPQLAAMVASQNNSYLNMTN 120
                    +RP CQIC +  H ALDCY+RM++ YQGRHPP +LAAM ++ NNS    T 
Sbjct: 266 QQAQNKPDGSRPQCQICGKLGHQALDCYHRMDFAYQGRHPPAKLAAMASTSNNSQGGET- 325

Query: 121 PSAIPFVLPWFVDFGCNAHVTADLGNLMVASEYNGEKHISVGSGQSLPITHTGSDTFPIS 180
                    W  D G   H+TA+L NL V + Y G   ++VG+GQS+PI +TG +   + 
Sbjct: 326 ---------WLTDTGATDHLTANLNNLTVQNPYKGSDQVAVGNGQSIPINNTG-NVHKLC 385

Query: 181 STSSLSL----SNLLCATKLWGAFSSKDLIKNGLYPITPSVAPSMSTNS--SISSPVAHI 240
           + ++ S     +  L      G    K L +NGLYPI      S+ST S  + SS  A +
Sbjct: 386 TDNNCSCYFDSNKFLIQDLPSGKVLYKGLSRNGLYPIHTHPPSSVSTPSVTASSSVSAFL 445

Query: 241 GVKSSSTLWHNQLGHPNSQVLHTVLRHLSLPICNNNRCVY---EFCLSSKMHKLHFPKYT 290
             K+   LWH +LGHP+ +VL + L  LS  + + N+ V    + CL  KMHKL F    
Sbjct: 446 SSKNKWQLWHQRLGHPSDRVLVSSLPSLSSCMSDRNKHVQHHCKHCLIGKMHKLPFVHSQ 505

BLAST of Lag0017659 vs. ExPASy TrEMBL
Match: A0A2N9HKM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40116 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.4e-36
Identity = 119/316 (37.66%), Postives = 165/316 (52.22%), Query Frame = 0

Query: 16  GGRGHGH---SRNNGRGRFPPQN----GNDRGRVPNFTNSLSTDNRPSCQICQRPSHSAL 75
           GGRG+      RN+ RG F   +     N  G  PN+ NS  T  RP CQIC +  H AL
Sbjct: 254 GGRGNNRGRGGRNSNRGGFSSNSQGFASNPLGFSPNY-NSSGTSQRPQCQICGKTGHLAL 313

Query: 76  DCYNRMNYHYQGRHPPPQLAAMVASQNNSYLN--MTNPSAIPFVLPWFVDFGCNAHVTAD 135
           DC++RMN+ YQGR PP +LAA+ ++  +S +N   +N S+      W  D G   H T D
Sbjct: 314 DCFHRMNFAYQGRQPPAKLAAIASTAMSSAINAPYSNQSS------WISDTGATDHFTPD 373

Query: 136 LGNLMVASEYNGEKHISVGSGQSLPITHTGSDTFPISS----------TSSLSLSNLLCA 195
           + ++    +Y G   ++VG+GQSLPITHTG+     SS            S+S SNLL  
Sbjct: 374 ISHIPDCHDYRGTDQVTVGNGQSLPITHTGNSQLYASSHLFKLRKILHVPSMS-SNLLSV 433

Query: 196 TKLW-----------GAFSSKDL----------IKNGLYPITPSVAPSMSTNSSISSPVA 255
            +               F  KDL           ++GLYPI  ++ P+ S     +S   
Sbjct: 434 HRFCKDNNASFYFDASKFRIKDLSSGRLLYNGPSEHGLYPIHGAILPASSPKLFHTS--- 493

Query: 256 HIGVKSSSTLWHNQLGHPNSQVLHTVLRH-LSLPICN-NNRCVYEFCLSSKMHKLHFPKY 290
              V SSS LWHN+LGHP   V+  VL++ L LP+ N  + C++  CL  KMHKL FP  
Sbjct: 494 --AVSSSSQLWHNRLGHPQQSVVKHVLQNKLRLPVSNTTSLCIH--CLEGKMHKLPFPNS 553

BLAST of Lag0017659 vs. ExPASy TrEMBL
Match: A0A2N9EJ78 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2556 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.8e-36
Identity = 118/326 (36.20%), Postives = 175/326 (53.68%), Query Frame = 0

Query: 4   ATQPPS--TRPAFN-GGRGHGHSRNNGRGRFPPQNGNDRGRV--PNFTNSLSTDN--RPS 63
           + +PP+   RP F    + +G  R  G  R  PQ  + +     P + +S +  N  RPS
Sbjct: 223 SNKPPNQDRRPRFPIPSKPNGSPRYQGPHRTSPQISHQKPSTNPPKYRSSPAPFNSTRPS 282

Query: 64  CQICQRPSHSALDCYNRMNYHYQGRHPPPQLAAMVASQNNSYLNMTNPSAIPFVLPWFVD 123
           CQIC + +H ALDCY+RM+Y YQGRHPP QLAAMVA  N  + N           PW+ D
Sbjct: 283 CQICGKNNHQALDCYHRMDYSYQGRHPPSQLAAMVAQTNAQFSNEEQ--------PWYAD 342

Query: 124 FGCNAHVTADLGNLMVASE-YNGEKHISVGSGQSLPITHTGSDTFPISST---------- 183
            G N H+TADL NL +  E Y GE +++VG+G +L I + GS +   +++          
Sbjct: 343 SGANQHITADLENLNITQEPYQGETNVAVGNGSTLQIANMGSTSLTANNSTFKLKHVLHC 402

Query: 184 -----SSLSLSNLL----CATKLW-GAFSSKDL----------IKNGLYPI-TPSVAPSM 243
                + LS+ N      C  +L   +F  KD+           K+GLYPI    ++P  
Sbjct: 403 PNVPINLLSIQNFCADNHCLFELTASSFLVKDIRTGQTLLHGHSKDGLYPIPLHRLSP-- 462

Query: 244 STNSSISSPVAHIGVKSSSTLWHNQLGHPNSQVLHTVLRHLSLPICNNNRCVY-EFCLSS 290
              S IS+  A +G+++S+ +WH++LGHP   ++H V+ H  LPI ++N   + E C  +
Sbjct: 463 ---SPISNFTAFVGLQASTKVWHHRLGHPAMPLVHRVIHHHKLPISSSNDSTFCEPCQMA 522

BLAST of Lag0017659 vs. ExPASy TrEMBL
Match: A0A2N9I1S1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45683 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.4e-35
Identity = 129/356 (36.24%), Postives = 173/356 (48.60%), Query Frame = 0

Query: 1   MFAATQPP----STRPAF--NGGRGHGHSRNN---GRGRF-----------PPQNGNDRG 60
           MFA+  P     S++ +F  N  +  G  RNN   GRGRF           P QN +   
Sbjct: 245 MFASAAPNNRNFSSQSSFYVNNSQARGRGRNNSHRGRGRFNHNHQYAQSTAPNQNHSQYS 304

Query: 61  RVPNFTNSLSTD---------NRPSCQICQRPSHSALDCYNRMNYHYQGRHPPPQLAAMV 120
           +   +  S + +         +RP CQIC +  H ALDCY+RM++ YQGRHPP +LAAM 
Sbjct: 305 QHNQYAQSTAPNQQALNKPDGSRPQCQICGKLGHQALDCYHRMDFAYQGRHPPAKLAAMA 364

Query: 121 ASQNNSYLNMTNPSAIPFVLPWFVDFGCNAHVTADLGNLMVASEYNGEKHISVGSGQSLP 180
           ++ NNS    T          W  D G   H+TA+L NL V   Y G   ++VG+GQS+P
Sbjct: 365 STSNNSQGGET----------WLTDTGATDHLTANLNNLTVQDPYKGSDQVAVGNGQSIP 424

Query: 181 ITHTGSD-------TFPISST--SSLSLSNLLCATKLW---------------------G 240
           I HTG+         F + +   SS   SNLL   KL                      G
Sbjct: 425 INHTGNGQLCTKFYNFRLHNLLHSSKISSNLLSVHKLCTDNNCSCYFDSNKFLIQDLPSG 484

Query: 241 AFSSKDLIKNGLYPI---TPSVA--PSMSTNSSISSPVAHIGVKSSSTLWHNQLGHPNSQ 290
               K L +NGLYPI    PS    PS++ +SS+S   A +  K+   LWH +LGHP+ +
Sbjct: 485 KVLYKGLSRNGLYPIHTHPPSSVSPPSVTASSSVS---AFLSSKNKWQLWHQRLGHPSDR 544

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150845.18.6e-3454.82uncharacterized protein LOC111018892 [Momordica charantia][more]
RVW87886.11.1e-3335.89Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera][more]
RVW77387.11.5e-3335.89Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
KAF8394586.11.2e-3234.97hypothetical protein HHK36_020800 [Tetracentron sinense][more]
KAB5527608.12.8e-3238.10hypothetical protein DKX38_021455 [Salix brachista][more]
Match NameE-valueIdentityDescription
Q9ZT941.3e-1630.12Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW23.0e-1326.13Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A2N9E6N09.0e-3737.66Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2498 PE=4 SV=1[more]
A0A2N9FKJ81.2e-3637.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15492 PE=4 SV=1[more]
A0A2N9HKM93.4e-3637.66Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40116 PE=4 SV=1[more]
A0A2N9EJ785.8e-3636.20Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9I1S16.4e-3536.24Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45683 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 192..265
e-value: 3.6E-8
score: 33.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 19..152
NoneNo IPR availablePANTHERPTHR34222:SF35SUBFAMILY NOT NAMEDcoord: 19..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017659.1Lag0017659.1mRNA