Lag0017646 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017646
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposase
Location	chr5: 6375604 .. 6376169 (-)
RNA-Seq Expression	Lag0017646
Synteny	Lag0017646

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACTTGTCTCAAATTCATTTATTTATTATATTTTTTGTGAGTTAATTATATCTTCTAAGTTTATATATTTCATGAATGTTTTGTGTCTTTCTTGCAGATTGTTACAAGGAGTAAACAAAGCAGTAGAAGCGGAGATGAAGGAAATGTTCTTATTCAACCACGGGTGCCAAGACGAAGGCCCACTATGATGCATCGATTGGCACGCCTCAGACATACGGAAGAACGTTTGACGATTGTATACAACAACCAAGGTCAAGCTGTTAGAGAGAATGCAAACCAAATGCAGATTTACATTGGGGTTTGTGTGAGACAACAAATCACAATCACATACGAAAATTGGAAAGACGTGCCAAACGAACTGAAGGATAAGATTTTTTATTGCATAGAGGTAAAAAGTTTATTGATCTATAGGAGTGAAAAGTTTATTTAGTTTACTTGTTTTGCTAACTACTTTGGTTTTTTTCTTATGCAGATGTCGTTCGTGGTGGACCCTAGGTCCAATAGTAGTATTCTTCAATCTACCTCTAGAAAATTTCGAACGTTCAAAACGAACCTAACGTAG

mRNA sequence

ATGATTGTTACAAGGAGTAAACAAAGCAGTAGAAGCGGAGATGAAGGAAATGTTCTTATTCAACCACGGGTGCCAAGACGAAGGCCCACTATGATGCATCGATTGGCACGCCTCAGACATACGGAAGAACGTTTGACGATTGTATACAACAACCAAGGTCAAGCTGTTAGAGAGAATGCAAACCAAATGCAGATTTACATTGGGGTTTGTGTGAGACAACAAATCACAATCACATACGAAAATTGGAAAGACGTGCCAAACGAACTGAAGGATAAGATTTTTTATTGCATAGAGATGTCGTTCGTGGTGGACCCTAGGTCCAATAGTAGTATTCTTCAATCTACCTCTAGAAAATTTCGAACGTTCAAAACGAACCTAACGTAG

Coding sequence (CDS)

ATGATTGTTACAAGGAGTAAACAAAGCAGTAGAAGCGGAGATGAAGGAAATGTTCTTATTCAACCACGGGTGCCAAGACGAAGGCCCACTATGATGCATCGATTGGCACGCCTCAGACATACGGAAGAACGTTTGACGATTGTATACAACAACCAAGGTCAAGCTGTTAGAGAGAATGCAAACCAAATGCAGATTTACATTGGGGTTTGTGTGAGACAACAAATCACAATCACATACGAAAATTGGAAAGACGTGCCAAACGAACTGAAGGATAAGATTTTTTATTGCATAGAGATGTCGTTCGTGGTGGACCCTAGGTCCAATAGTAGTATTCTTCAATCTACCTCTAGAAAATTTCGAACGTTCAAAACGAACCTAACGTAG

Protein sequence

MIVTRSKQSSRSGDEGNVLIQPRVPRRRPTMMHRLARLRHTEERLTIVYNNQGQAVRENANQMQIYIGVCVRQQITITYENWKDVPNELKDKIFYCIEMSFVVDPRSNSSILQSTSRKFRTFKTNLT

Homology

[Close]

BLAST of Lag0017646 vs. NCBI nr
Match: XP_031740251.1 (uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 6.1e-29
Identity = 76/130 (58.46%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MIVTRSKQSSRSGDEGNVLIQPRV---PRRRPTMMHRLARLRHTEERLTIVYNNQGQAVR 60
           MI T     S S DEGNVLI+ +V    RR PT+M  L  +R++ ER TI YN++GQ V 
Sbjct: 1   MIHTMDDSCSSSQDEGNVLIRYKVKKTARRGPTIMPELLHIRNSGERKTIEYNDRGQPVG 60

Query: 61  ENANQMQIYIGVCVRQQITITYENWKDVPNELKDKIFYCIEMSFVVDPRSNSSILQSTSR 120
           ENA +MQ +IGVCVRQQI +TY +WK+VP ELKD IF CI+MSFVVD  S   ILQS S+
Sbjct: 61  ENAKKMQSFIGVCVRQQIPLTYNSWKEVPQELKDTIFDCIQMSFVVDLSSKHYILQSASK 120

Query: 121 KFRTFKTNLT 128
           KFR+FK+ LT
Sbjct: 121 KFRSFKSTLT 130

[Close]

BLAST of Lag0017646 vs. NCBI nr
Match: XP_008451868.1 (PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_008451869.1 PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_016901189.1 PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >KAA0040180.1 uncharacterized protein E6C27_scaffold118G00160 [Cucumis melo var. makuwa] >TYK16450.1 uncharacterized protein E5676_scaffold21G002480 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 3.0e-28
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 10  SRSGDEGNVLIQ---PRVPRRRPTMMHRLARLRHTEERLTIVYNNQGQAVRENANQMQIY 69
           S S DEGNVLI+    R  RR PT+M  L  +R++ ER TI YN++GQ V ENA +MQ +
Sbjct: 6   SSSQDEGNVLIRYEVKRTARRGPTIMPELLHIRNSGERKTIEYNDRGQPVGENAKKMQSF 65

Query: 70  IGVCVRQQITITYENWKDVPNELKDKIFYCIEMSFVVDPRSNSSILQSTSRKFRTFKTNL 128
           IGVCVRQQI +TY +WK+VP ELKD IF CI+MSFVVD  S   ILQS S+KFR+FK+ L
Sbjct: 66  IGVCVRQQIPVTYNSWKEVPQELKDTIFDCIQMSFVVDLSSKHYILQSASKKFRSFKSTL 125

[Close]

BLAST of Lag0017646 vs. NCBI nr
Match: XP_016901190.1 (PREDICTED: uncharacterized protein LOC103493028 isoform X2 [Cucumis melo])

HSP 1 Score: 135.6 bits (340), Expect = 3.0e-28
Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 10  SRSGDEGNVLIQ---PRVPRRRPTMMHRLARLRHTEERLTIVYNNQGQAVRENANQMQIY 69
           S S DEGNVLI+    R  RR PT+M  L  +R++ ER TI YN++GQ V ENA +MQ +
Sbjct: 6   SSSQDEGNVLIRYEVKRTARRGPTIMPELLHIRNSGERKTIEYNDRGQPVGENAKKMQSF 65

Query: 70  IGVCVRQQITITYENWKDVPNELKDKIFYCIEMSFVVDPRSNSSILQSTSRKFRTFKTNL 128
           IGVCVRQQI +TY +WK+VP ELKD IF CI+MSFVVD  S   ILQS S+KFR+FK+ L
Sbjct: 66  IGVCVRQQIPVTYNSWKEVPQELKDTIFDCIQMSFVVDLSSKHYILQSASKKFRSFKSTL 125

[Close]

BLAST of Lag0017646 vs. NCBI nr
Match: XP_022136080.1 (uncharacterized protein LOC111007859 isoform X4 [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-28
Identity = 72/125 (57.60%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 6   SKQSSRSGDEGNVLIQ---PRVPRRRPTMMHRLARLRHTEERLTIVYNNQGQAVRENANQ 65
           S  SS S DE +V+I     +V RR PT MH L  +R+  +R TI YN+QGQ + ENA +
Sbjct: 2   SDSSSSSQDERSVVIHTEVKKVARRGPTTMHELTCIRNLGKRKTIEYNDQGQPIGENAKK 61

Query: 66  MQIYIGVCVRQQITITYENWKDVPNELKDKIFYCIEMSFVVDPRSNSSILQSTSRKFRTF 125
           MQ +IGVCVRQ+I +TY +WK+VP ELKDKIF C+E SFV+D RS   ILQS S+KFRTF
Sbjct: 62  MQSFIGVCVRQKIPVTYNHWKEVPQELKDKIFNCVEKSFVLDWRSKHHILQSASKKFRTF 121

Query: 126 KTNLT 128
           K+ LT
Sbjct: 122 KSTLT 126

[Close]

BLAST of Lag0017646 vs. NCBI nr
Match: XP_022136076.1 (uncharacterized protein LOC111007859 isoform X1 [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-28
Identity = 72/125 (57.60%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 6   SKQSSRSGDEGNVLIQ---PRVPRRRPTMMHRLARLRHTEERLTIVYNNQGQAVRENANQ 65
           S  SS S DE +V+I     +V RR PT MH L  +R+  +R TI YN+QGQ + ENA +
Sbjct: 2   SDSSSSSQDERSVVIHTEVKKVARRGPTTMHELTCIRNLGKRKTIEYNDQGQPIGENAKK 61

Query: 66  MQIYIGVCVRQQITITYENWKDVPNELKDKIFYCIEMSFVVDPRSNSSILQSTSRKFRTF 125
           MQ +IGVCVRQ+I +TY +WK+VP ELKDKIF C+E SFV+D RS   ILQS S+KFRTF
Sbjct: 62  MQSFIGVCVRQKIPVTYNHWKEVPQELKDKIFNCVEKSFVLDWRSKHHILQSASKKFRTF 121

Query: 126 KTNLT 128
           K+ LT
Sbjct: 122 KSTLT 126

The following BLAST results are available for this feature:

BLAST of Lag0017646 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740251.1	6.1e-29	58.46	uncharacterized protein LOC101213947 [Cucumis sativus]	[more]
XP_008451868.1	3.0e-28	60.33	PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_016901190.1	3.0e-28	60.33	PREDICTED: uncharacterized protein LOC103493028 isoform X2 [Cucumis melo]	[more]
XP_022136080.1	4.0e-28	57.60	uncharacterized protein LOC111007859 isoform X4 [Momordica charantia]	[more]
XP_022136076.1	4.0e-28	57.60	uncharacterized protein LOC111007859 isoform X1 [Momordica charantia]	[more]

BLAST of Lag0017646 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33018	OS10G0338966 PROTEIN-RELATED	coord: 21..127
None	No IPR available	PANTHER	PTHR33018:SF19	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 21..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017646.1	Lag0017646.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity