Lag0017640 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017640
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein Ycf2-like
Location	chr5: 6286540 .. 6287181 (+)
RNA-Seq Expression	Lag0017640
Synteny	Lag0017640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGCGACTGCCACATCAAAAAACATTACTTTGAGGGGGAGAAGACTGTCAGCCGAAGGTATTTGAATATGGCGTTTAACGTTAACAAAAACGCAACGAATGATGATATGCTAAAAGTGGCGCTCCTGTATTTCTTGGAAAGTTTTCTTCTGGCCAGAAAAGAGACTGTGAATGTCAATGTGGAGCACATCGAGATGGTTGACGACGGGGAGCTCTTTAACACTTATCCTTGGGGAAGGTGCGTGTTCGAGTTATTACTAGGATACATGCACAAGGCCTTGATTAGTAAAGGCGCGACCGGAATCACGATGGGTGGGTTTATATTCCCCCTACTTGCGTGGGCATACGAGATCATCCCGACCTTAAGTTCAGCGGAGAATTGTTTTGCCCGAAAGATGAATTCGCACCCGTCGAGGGTAATCAGTTGGGCTGCAGACGTGCAACCAAAGTGGAAAGACCTGGACCGTAAAAGTTTTGAATCCGCAAAGGTAATTTGTACATACCCATCTAATCCTTTTTACTAACCGACATTGATTGACTATTGAGTATAACAACTATGAACAACACAGTTAGAGGTGATCCCTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACATCCTTTCTTGGGTTTTTTAG

mRNA sequence

ATGAAAGGCGACTGCCACATCAAAAAACATTACTTTGAGGGGGAGAAGACTGTCAGCCGAAGGTATTTGAATATGGCGTTTAACGTTAACAAAAACGCAACGAATGATGATATGCTAAAAGTGGCGCTCCTGTATTTCTTGGAAAGTTTTCTTCTGGCCAGAAAAGAGACTGTGAATGTCAATGTGGAGCACATCGAGATGGTTGACGACGGGGAGCTCTTTAACACTTATCCTTGGGGAAGGTGCGTGTTCGAGTTATTACTAGGATACATGCACAAGGCCTTGATTAGTAAAGGCGCGACCGGAATCACGATGGGTGGGTTTATATTCCCCCTACTTGCGTGGGCATACGAGATCATCCCGACCTTAAGTTCAGCGGAGAATTGTTTTGCCCGAAAGATGAATTCGCACCCGTCGAGGGTAATCAGTTGGGCTGCAGACGTGCAACCAAAGTGGAAAGACCTGGACCGTAAAAGTTTTGAATCCGCAAAGTTAGAGGTGATCCCTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACATCCTTTCTTGGGTTTTTTAG

Coding sequence (CDS)

ATGAAAGGCGACTGCCACATCAAAAAACATTACTTTGAGGGGGAGAAGACTGTCAGCCGAAGGTATTTGAATATGGCGTTTAACGTTAACAAAAACGCAACGAATGATGATATGCTAAAAGTGGCGCTCCTGTATTTCTTGGAAAGTTTTCTTCTGGCCAGAAAAGAGACTGTGAATGTCAATGTGGAGCACATCGAGATGGTTGACGACGGGGAGCTCTTTAACACTTATCCTTGGGGAAGGTGCGTGTTCGAGTTATTACTAGGATACATGCACAAGGCCTTGATTAGTAAAGGCGCGACCGGAATCACGATGGGTGGGTTTATATTCCCCCTACTTGCGTGGGCATACGAGATCATCCCGACCTTAAGTTCAGCGGAGAATTGTTTTGCCCGAAAGATGAATTCGCACCCGTCGAGGGTAATCAGTTGGGCTGCAGACGTGCAACCAAAGTGGAAAGACCTGGACCGTAAAAGTTTTGAATCCGCAAAGTTAGAGGTGATCCCTGTCGCAACGTCATCGCGACGCGGAGCGGCCGACATCCTTTCTTGGGTTTTTTAG

Protein sequence

MKGDCHIKKHYFEGEKTVSRRYLNMAFNVNKNATNDDMLKVALLYFLESFLLARKETVNVNVEHIEMVDDGELFNTYPWGRCVFELLLGYMHKALISKGATGITMGGFIFPLLAWAYEIIPTLSSAENCFARKMNSHPSRVISWAADVQPKWKDLDRKSFESAKLEVIPVATSSRRGAADILSWVF

Homology

[Close]

BLAST of Lag0017640 vs. NCBI nr
Match: TYK09852.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 4.6e-49
Identity = 96/171 (56.14%), Postives = 133/171 (77.78%), Query Frame = 0


Query: 1   MKGDCHIKKHYFEGEKTVSRRYLNMAFNVNKNATNDDMLKVALLYFLESFLLARKETVNV 60
           +KG   +K  YFE  KTV+R+YLN+ FN++   T+DD +K+A LYFLESFL+ ++E ++V
Sbjct: 45  IKGGGRLKWVYFENLKTVTRQYLNVMFNISTAGTDDDRIKMAKLYFLESFLIPKQECLSV 104

Query: 61  NVEHIEMVDDGELFNTYPWGRCVFELLLGYMHKALISKGATGITM-GGFIFPLLAWAYEI 120
           + +HI MVDD E+F+ YPWGR  FELL+ +M++A+ SKG TGI+M GGFIFP+LAWAYE+
Sbjct: 105 DWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISMGGGFIFPILAWAYEV 164

Query: 121 IPTLSSAENCFARKMNSHPSRVISWAADVQPKWKDLDRKSFESAKLEVIPV 171
           IPTLS+  N FA ++++   R+I+WAAD QPKWKDL +K F+S  LEV P+
Sbjct: 165 IPTLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQKVFDSPTLEVSPM 215

[Close]

BLAST of Lag0017640 vs. NCBI nr
Match: KAA0051565.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 5.1e-48
Identity = 92/170 (54.12%), Postives = 132/170 (77.65%), Query Frame = 0


Query: 1   MKGDCHIKKHYFEGEKTVSRRYLNMAFNVNKNATNDDMLKVALLYFLESFLLARKETVNV 60
           +KG   +K  YFE  KTV+R+YLN+ FN++   T+DD +K+A LYFLE FL+ ++E ++V
Sbjct: 139 IKGGGRLKGVYFENLKTVTRQYLNVMFNISTAGTDDDKIKMAKLYFLEIFLIPKQECLSV 198

Query: 61  NVEHIEMVDDGELFNTYPWGRCVFELLLGYMHKALISKGATGITMGGFIFPLLAWAYEII 120
           + ++I MVDD E+F+ YPWGR  FELL+ +M++A+ SKG TGI++ GFIFP+LAWAYE+I
Sbjct: 199 DWDYIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISIVGFIFPILAWAYEVI 258

Query: 121 PTLSSAENCFARKMNSHPSRVISWAADVQPKWKDLDRKSFESAKLEVIPV 171
           PTLS+  N FA ++++   R+I+WAAD+QPKWKDL +K F+S  LEV P+
Sbjct: 259 PTLSTPPNFFATRISNEVPRIINWAADIQPKWKDLKQKVFDSLTLEVSPM 308

[Close]

BLAST of Lag0017640 vs. NCBI nr
Match: TYK21258.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 8.6e-48
Identity = 92/169 (54.44%), Postives = 131/169 (77.51%), Query Frame = 0


Query: 2   KGDCHIKKHYFEGEKTVSRRYLNMAFNVNKNATNDDMLKVALLYFLESFLLARKETVNVN 61
           KG   +K  YFE  KTV+R+YLN+ FN++   T+DD +K+A LYFLE FL+ ++E ++V+
Sbjct: 59  KGGGRLKGVYFENLKTVTRQYLNVMFNISTAGTDDDKIKMAKLYFLEIFLIPKQECLSVD 118

Query: 62  VEHIEMVDDGELFNTYPWGRCVFELLLGYMHKALISKGATGITMGGFIFPLLAWAYEIIP 121
            ++I MVDD E+F+ YPWGR  FELL+ +M++A+ SKG TGI++ GFIFP+LAWAYE+IP
Sbjct: 119 WDYIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISIVGFIFPILAWAYEVIP 178

Query: 122 TLSSAENCFARKMNSHPSRVISWAADVQPKWKDLDRKSFESAKLEVIPV 171
           TLS+  N FA ++++   R+I+WAAD+QPKWKDL +K F+S  LEV P+
Sbjct: 179 TLSTPPNFFATRISNEVPRIINWAADIQPKWKDLKQKVFDSLTLEVSPM 227

[Close]

BLAST of Lag0017640 vs. NCBI nr
Match: KAA0047596.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 5.6e-47
Identity = 91/170 (53.53%), Postives = 127/170 (74.71%), Query Frame = 0


Query: 1   MKGDCHIKKHYFEGEKTVSRRYLNMAFNVNKNATNDDMLKVALLYFLESFLLARKETVNV 60
           + G   +K  YFE  KTV+R+YLN+ FN++   T+DD +K+A LYFLESFL+ ++E  +V
Sbjct: 276 INGGGRLKGVYFENLKTVTRQYLNVMFNISTTGTDDDRIKMAKLYFLESFLIPKQECPSV 335

Query: 61  NVEHIEMVDDGELFNTYPWGRCVFELLLGYMHKALISKGATGITMGGFIFPLLAWAYEII 120
           + +HI MVDD E+F+ YPWGR  FELL+ +M++ + SKG TGI+MGGFIFP+LAWAYE+I
Sbjct: 336 DWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQTGISMGGFIFPILAWAYEVI 395

Query: 121 PTLSSAENCFARKMNSHPSRVISWAADVQPKWKDLDRKSFESAKLEVIPV 171
           PTLS+  N F  ++++   R+I+ A D QPKWKDL +K F+S  LEV P+
Sbjct: 396 PTLSTPPNFFVTRISNEVPRIINCATDTQPKWKDLKQKVFDSPTLEVSPM 445

[Close]

BLAST of Lag0017640 vs. NCBI nr
Match: TYK23840.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-45
Identity = 91/170 (53.53%), Postives = 127/170 (74.71%), Query Frame = 0


Query: 1   MKGDCHIKKHYFEGEKTVSRRYLNMAFNVNKNATNDDMLKVALLYFLESFLLARKETVNV 60
           +KG   +K  YFE  KTV R+YLN+ FN++   T+DD +K+A LYFLESFL+ ++E ++V
Sbjct: 45  IKGGGRLKGVYFENLKTVMRQYLNVMFNISTARTDDDRIKMAKLYFLESFLIPKQECLSV 104

Query: 61  NVEHIEMVDDGELFNTYPWGRCVFELLLGYMHKALISKGATGITMGGFIFPLLAWAYEII 120
           + +HI MVDD E+F+ YPWGR  FELL+ +M++ + SKG TGI++ GFIF +LAWAYE+ 
Sbjct: 105 DWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQTGISIWGFIFLILAWAYEVN 164

Query: 121 PTLSSAENCFARKMNSHPSRVISWAADVQPKWKDLDRKSFESAKLEVIPV 171
           PTLS+  N FA ++ +   R+I+WAAD QPKWKDL +K F+S  LEV P+
Sbjct: 165 PTLSTPFNFFATRIFNEVPRIINWAADTQPKWKDLKQKVFDSPTLEVSPM 214

The following BLAST results are available for this feature:

BLAST of Lag0017640 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09852.1	4.6e-49	56.14	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0051565.1	5.1e-48	54.12	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK21258.1	8.6e-48	54.44	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0047596.1	5.6e-47	53.53	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK23840.1	1.1e-45	53.53	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of Lag0017640 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015410	Domain of unknown function DUF1985	PFAM	PF09331	DUF1985	coord: 7..88 e-value: 2.0E-16 score: 60.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017640.1	Lag0017640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane