Lag0017634 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017634
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	transcription initiation factor TFIID subunit 11
Location	chr5: 6160706 .. 6163977 (+)
RNA-Seq Expression	Lag0017634
Synteny	Lag0017634

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAATCGAAGGACCCATTTGAAGCAGCATTCGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCCGCCGCCGACGATCTCGAAATTCAGACCAATATAGCCGCCGCCCTCGCCGACGACGCTCTTGATTTGCACGACGGCGAAGATGATCCAAAATCCATCGCCGCAGCCACACATTCCGGCATTCCTTCTGCCTCCACCACTTCTATGTTTGTTTCCCCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGATGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCGAGCGGTGATCCAGATAAGATGGCGAAGATGCAGTATGTTTTCTTGGCTCCCTCAGTATATAGTTTCAATGTTATCGTTAACTGTGAGGCTAAGAAATACTTCCTCTGTCAACTTCTTTGTCGTGATTTTGATAATTTTTAGGTTAATTTACAAAATTCTCAGCGTTTTTTGCGTTTGTTAAAAGTAGGCATGATTTTTTTTTTTTATGCAATTTTATTTCAATAGATTGCATCGGTAACCCGCAAATGGGAGGATCAATGCCCTTAGACTTCTGTGGAATACGATAGATCATTAGTAAAGACTAGATACCAACTTTATAGGAAGAGCCTACACTGTTTAAGTGCTTTCTCAGCTTGCCAATGATCTTCAAAATGTTTGTAGCATGTAGTCCTTTGATCAGGGCATCATGAGTTGATTGATATGAATACAGTGTGAACTAGTTCATTGTTTAGTTTCTTCTGTGGAATATTGATAATTTGTAAAATTCTCAAATTCCCTTTGTCCTTGCCAAAAATTTTGCTTTTGAACCTGGCCTAGCTATTGCATATTGCTTGCTGCTCTTCCAAATTACCTGGTGTTCCCATTAAGAATAATGCAACAGCCGCCTTATGTTGATTTTCTTCATCAAGAGATCCAAAAGGGTTTGCTTCTAAGACGACGTCATTTACTTGGTCCAAGAAACTCTGATGATGCACCCACAACTGAATTTTATAGATTGACTTACGTGTGAATACAGTTGTATGATAGACATGTTAATTTCAAAATTGCTCTTGATTAGTTAAGTGACTATGTGCTGAAAAAATAAATAAGGGATATATATATAGATGGGCACTCAAGTTTTTCATGGAAAACCCGATCTTTGGATAAAAACCTTGGGACTATGAGGGAGAGATTCACTGAGAAACAACTATGAACTTATACAAACTCCAAGACTTACTCAACCACACCTAACCTGTGTATTATGCCGAAGACGTTAGGTATTAAATATGTATCTCGTTTAATCATGACTTTCATTGAACTCCTCTCTTGACTTTTGCTATGAACTGCAACTTACACATGTTGGCAATGGCGGAAGATGTTGCCATGCCAGTGTAAGGATATTAGTATGGTATATAGGGGGAATAGTATTAGAAGGGTAGGAGTGGTATAATAGTAAATAACTAAGGCACACCCTGATACCAATTTGTTAGGAACCCGAACACTACGAACAAACTTAGATATATATTGCAATATCAAAAGAAAATTACAATATACCAATAGCCTTTCGAGAGGGCTATCTCTCTCCCAAGAGTCCCACAATGAGACACTACCAAAATTCTCCACACCCTAAAGACTCCATAAACTACCCTATTTATAACTCAGGCACACCCAAGGCTCCCTAGCTATTTACTATTATACCCCTCCTACCCTTCTAATACTATTCCCCCTATATACCATACTAATATCCTTACATTAGCTATTTACTATTATACCCCTCCTACCCTTCTAATACTATTCCCCCTATATACCATACTAATATCCTTACAGCCAGTAACCAACGATCCTACTAAACTACTCTTTTATATTGATTTGAATTGCTCAATTGGTAGAAACGCTTATATTCAGGTTTTATGGCAGTTAGACTACTATTTGTCATCAAGCTGAAAGTCATGAATGATGAACCTTTATCCCATTGTTTGATATTTAGGCCATCTTTTTCTGTGCTAGTTGTTCATTACTTGTTTGGTGGTGAAATACATTTCATTTTTATTTAAATTTGAAGTAGGAACTCAATTTTTTATCCATGACTATTAGGATTGTGTATTTCAATTTCTTAAACTACTAGCGTGTTTTTATATCTCCCACTTTCTCTTGTACTTCCATGAATTTTATCCCTTATTAAAACATAATACACCCTCTAGGCTTCATCCTTTATAATATAAATCCTGCTTTTAAATTGGAAAAAGATGGATATACTTTTTGGTCGTTGCTCCTGAAAGTTAGATGAAAATGACTGTTTTTTAAGATTAATGCGAGATCATTTTTGTTACTCGGGATGCTTGTTTGGATTTGTTAGGAGTGAAATACAACATTATGAAATCTTCACTTTGGAAAGAATCTGTTGTAACTTGTCTTAACATTTGGCCAGAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGTTATGAGTCCTTCCGCAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGGTATGAATCTTAATATTTTATCGTAGTGAAAGACATTAGAGATGGTAATGAGGGGTCGGGAAATTTTAGTCTCTGTCTCCACCCCATTCTCTCTGGGTCTTAAGATGGTTTTGATGGTTGGGCATGGGCTAGCTATTGTTTTTTGTTTCTTTTTCTTTCATCCTCTTTCTTTCTTTCTTTCTTTTTCTACTGAGACGTTAATCTTTATGAACATGAACTTACTTCATCTTGCTTCCATTCATTTGTAAATCGTAGCTATTAGCAAGCATCTCAGGAACACAGAAAATTTCTGTACCGATGACGATCGTAGTGTCTGGGATAGCAAAGATGTTCGTTGGTGAACTCGTAGAAACGTGTATGTATAAACTTCTCTAAAATCCAATTCAATCTTCATGTAGGACTCAAAATATGCCTTTCTTTTCCTCTGTTCAGTTACTTTTAATAGCAATGTGAAACATAGACAAAAGAATATGCATATTTCAAAACGACATCGACTTATTTCAATACTTTCAGAAATTGAATCAAATTGGCCTTTTTAACTCAGTGGTAGAGTAACGCCATGGTAAGGCGTAAATCGTCTTATTTCAATACTTTTGTTTTGTTTCAGCAAGAGTTGTTATGACAGAGCGTAATGATTCTGGACCCATCAGGCCATGCCATCTCAGGGAAGCATATAGAAGGCTAAAGCTTGAAGGTAAAATTCCAAGGAAATCAGTGCCTAGACTCTTTCGCTAA

mRNA sequence

ATGAAGCAATCGAAGGACCCATTTGAAGCAGCATTCGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCCGCCGCCGACGATCTCGAAATTCAGACCAATATAGCCGCCGCCCTCGCCGACGACGCTCTTGATTTGCACGACGGCGAAGATGATCCAAAATCCATCGCCGCAGCCACACATTCCGGCATTCCTTCTGCCTCCACCACTTCTATGTTTGTTTCCCCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGATGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCGAGCGGTGATCCAGATAAGATGGCGAAGATGCAAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGTTATGAGTCCTTCCGCAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGCTATTAGCAAGCATCTCAGGAACACAGAAAATTTCTGTACCGATGACGATCGTAGTGTCTGGGATAGCAAAGATGTTCGTTGGTGAACTCGTAGAAACGTCAAGAGTTGTTATGACAGAGCGTAATGATTCTGGACCCATCAGGCCATGCCATCTCAGGGAAGCATATAGAAGGCTAAAGCTTGAAGGTAAAATTCCAAGGAAATCAGTGCCTAGACTCTTTCGCTAA

Coding sequence (CDS)

ATGAAGCAATCGAAGGACCCATTTGAAGCAGCATTCGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCCGCCGCCGACGATCTCGAAATTCAGACCAATATAGCCGCCGCCCTCGCCGACGACGCTCTTGATTTGCACGACGGCGAAGATGATCCAAAATCCATCGCCGCAGCCACACATTCCGGCATTCCTTCTGCCTCCACCACTTCTATGTTTGTTTCCCCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGATGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCGAGCGGTGATCCAGATAAGATGGCGAAGATGCAAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGTTATGAGTCCTTCCGCAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGCTATTAGCAAGCATCTCAGGAACACAGAAAATTTCTGTACCGATGACGATCGTAGTGTCTGGGATAGCAAAGATGTTCGTTGGTGAACTCGTAGAAACGTCAAGAGTTGTTATGACAGAGCGTAATGATTCTGGACCCATCAGGCCATGCCATCTCAGGGAAGCATATAGAAGGCTAAAGCTTGAAGGTAAAATTCCAAGGAAATCAGTGCCTAGACTCTTTCGCTAA

Protein sequence

MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKSIAAATHSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR

Homology

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BLAST of Lag0017634 vs. NCBI nr
Match: XP_022940909.1 (transcription initiation factor TFIID subunit 11 [Cucurbita moschata])

HSP 1 Score: 381.7 bits (979), Expect = 4.3e-102
Identity = 208/223 (93.27%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKS-IAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTN+AA +  DALDLHDG+D+PKS  AAA
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAA 60

Query: 61  THSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120
           T+SGIPSASTTS+FVS SSNVSAAPKTK+DDDEEEEENVEVELAKFPSSGDPDKMAKMQA
Sbjct: 61  TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120

Query: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180
           ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE
Sbjct: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180

Query: 181 TSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           T+RVVMTERNDSG IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 TARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223

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BLAST of Lag0017634 vs. NCBI nr
Match: KAG7028341.1 (Transcription initiation factor TFIID subunit 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380.9 bits (977), Expect = 7.3e-102
Identity = 208/223 (93.27%), Postives = 215/223 (96.41%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKS-IAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTN+AA    DALDLHDG+D+PKS  AAA
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADALDLHDGDDEPKSAAAAA 60

Query: 61  THSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120
           T+SGIPSASTTS+FVS SSNVSAAPKTK+DDDEEEEENVEVELAKFPSSGDPDKMAKMQA
Sbjct: 61  TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120

Query: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180
           ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE
Sbjct: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180

Query: 181 TSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           T+RVVMTERNDSG IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 TARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223

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BLAST of Lag0017634 vs. NCBI nr
Match: XP_023538856.1 (transcription initiation factor TFIID subunit 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 1.2e-101
Identity = 208/225 (92.44%), Postives = 215/225 (95.56%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKSIAA-- 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTN+AA    DALDLHDG+D+PKS AA  
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADALDLHDGDDEPKSAAAAA 60

Query: 61  -ATHSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKM 120
            AT+SGIPSASTTS+FVS SSNVSAAPKTK+DDDEEEEENVEVELAKFPSSGDPDKMAKM
Sbjct: 61  TATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKM 120

Query: 121 QAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGEL 180
           QAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGEL
Sbjct: 121 QAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGEL 180

Query: 181 VETSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           VET+RVVMTERNDSG IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 VETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225

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BLAST of Lag0017634 vs. NCBI nr
Match: XP_023005534.1 (transcription initiation factor TFIID subunit 11 [Cucurbita maxima])

HSP 1 Score: 379.4 bits (973), Expect = 2.1e-101
Identity = 205/224 (91.52%), Postives = 215/224 (95.98%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPK--SIAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTN+AA    DA+DLHDG+DDPK  + AA
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADAIDLHDGDDDPKTAAAAA 60

Query: 61  ATHSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKMQ 120
           AT+SG+PSASTTS+FVS SSN+SAAPKTK+DDDEEEEENVEVELAKFPSSGDPDKMAKMQ
Sbjct: 61  ATNSGVPSASTTSLFVSSSSNISAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQ 120

Query: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180
           AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV
Sbjct: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180

Query: 181 ETSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           ET+RVVMTERNDSG IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224

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BLAST of Lag0017634 vs. NCBI nr
Match: KAG6596814.1 (Transcription initiation factor TFIID subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379.0 bits (972), Expect = 2.8e-101
Identity = 207/223 (92.83%), Postives = 214/223 (95.96%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKSIAAAT 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTN+AA    DALDLHDG+D+PKS AAA 
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADALDLHDGDDEPKSAAAAA 60

Query: 61  -HSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120
            +SGIPSASTTS+FVS SSNVSAAPKTK+DDDEEEEENVEVELAKFPSSGDPDKMAKMQA
Sbjct: 61  KNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120

Query: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180
           ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE
Sbjct: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180

Query: 181 TSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           T+RVVMTERNDSG IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 TARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223

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BLAST of Lag0017634 vs. ExPASy Swiss-Prot
Match: Q9M565 (Transcription initiation factor TFIID subunit 11 OS=Arabidopsis thaliana OX=3702 GN=TAF11 PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-55
Identity = 129/227 (56.83%), Postives = 159/227 (70.04%), Query Frame = 0


Query: 1   MKQSKDPFEAAF-EEQEESPPNSP----SAADDLEIQTNIAAALADDALDLHDGEDDPKS 60
           MK SKDPFEAA  EEQEESPP SP       D  E          D  +++   +D+ + 
Sbjct: 1   MKHSKDPFEAAIEEEQEESPPESPVGGGGGGDGSE----------DGRIEIDQTQDEDER 60

Query: 61  IAAATHSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMA 120
                       + TS+ V+ + N     K KD+DDEEEEEN++VEL K+P+S DP KMA
Sbjct: 61  PVDVRRP--MKKAKTSVVVTEAKN-----KDKDEDDEEEEENMDVELTKYPTSSDPAKMA 120

Query: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180
           KMQ ILSQFTE+QMSRYESFRR+  Q+  MK+LL  ++G+QKI +PM IV  GIAKMFVG
Sbjct: 121 KMQTILSQFTEDQMSRYESFRRSALQRPQMKKLLIGVTGSQKIGMPMIIVACGIAKMFVG 180

Query: 181 ELVETSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           ELVET+RVVM ER +SGPIRPCH+RE+YRRLKLEGK+P++SVPRLFR
Sbjct: 181 ELVETARVVMAERKESGPIRPCHIRESYRRLKLEGKVPKRSVPRLFR 210

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BLAST of Lag0017634 vs. ExPASy Swiss-Prot
Match: F4HR03 (Transcription initiation factor TFIID subunit 11b OS=Arabidopsis thaliana OX=3702 GN=TAF11B PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-39
Identity = 108/223 (48.43%), Postives = 135/223 (60.54%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKSIAAAT 60
           MK SKDPFEAA EEQEESP         +E +  +              E D +++    
Sbjct: 32  MKHSKDPFEAAMEEQEESP---------VETEQTL--------------EGDERAVKKC- 91

Query: 61  HSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMA-KMQA 120
                            ++V A  K KD          EVE  K  +  DP   A KMQ 
Sbjct: 92  ----------------KTSVVAEAKNKD----------EVEFTKNITGADPVTRANKMQK 151

Query: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180
           ILSQFTEEQMSRYESFRR+GF+K++M++L+  I+G  K+   M IVV GIAKMFVG+LVE
Sbjct: 152 ILSQFTEEQMSRYESFRRSGFKKSDMEKLVQRITGGPKMDDTMNIVVRGIAKMFVGDLVE 204

Query: 181 TSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           T+RVVM ER +SGPIRPCH+RE+YRRLKL+GK+P++SV RLFR
Sbjct: 212 TARVVMRERKESGPIRPCHIRESYRRLKLQGKVPQRSVQRLFR 204

[Close]

BLAST of Lag0017634 vs. ExPASy Swiss-Prot
Match: Q99JX1 (Transcription initiation factor TFIID subunit 11 OS=Mus musculus OX=10090 GN=Taf11 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-19
Identity = 69/170 (40.59%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 48  DGEDDPKSIAAATHSGIPSASTTSMFVSPSSNVS----AAPKTKDDDDEEEEENVEVELA 107
           DG+ D K  AAA  S + S   + +  +   N S    AA K K D  +++E+  +V   
Sbjct: 43  DGDADLKE-AAAEESELKSQDVSDVTAAERENSSLLTPAAKKLKLDIKDKKEKKQKV--- 102

Query: 108 KFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMT 167
                 D D++ KMQ ++S F+EEQ++RYE +RR+ F KA +KRL+ SI+GT  +S  + 
Sbjct: 103 ------DEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGT-SVSQNVV 162

Query: 168 IVVSGIAKMFVGELVETSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIP 214
           I +SGI+K+FVGE+VE +  V  +  ++ P++P H+REA RRLK +G+IP
Sbjct: 163 IAMSGISKVFVGEVVEEALDVCEKWGETPPLQPKHMREAVRRLKSKGQIP 201

[Close]

BLAST of Lag0017634 vs. ExPASy Swiss-Prot
Match: Q54XM9 (Transcription initiation factor TFIID subunit 11 OS=Dictyostelium discoideum OX=44689 GN=taf11 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.8e-18
Identity = 64/177 (36.16%), Postives = 103/177 (58.19%), Query Frame = 0


Query: 45  DLHDGEDDPKSIAAATHSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAK 104
           D    ED   S +  + S    + + S   S S + S+  +  DDDD+E   N+      
Sbjct: 280 DEDSDEDSDDSDSDESDSDDSDSDSDSDSDSDSDSDSSEGEGNDDDDDESTFNL------ 339

Query: 105 FPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTI 164
             S     +  +M  ++  F+E+Q +R+E ++R+ FQ+AN+K+++ S+  +  ++    I
Sbjct: 340 --SEMQVRENTQMNTLIKHFSEDQQTRFEYYKRSSFQRANIKKVMQSVL-SAPVNQTSAI 399

Query: 165 VVSGIAKMFVGELVETSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIP--RKSVPR 220
           V+ GIAK+FVGE+VE +R +M E  ++GPIRP H+REAYRRLK    IP  +KSVP+
Sbjct: 400 VMGGIAKVFVGEIVELARSIMEEWRETGPIRPRHIREAYRRLKESNSIPYYKKSVPK 447

[Close]

BLAST of Lag0017634 vs. ExPASy Swiss-Prot
Match: Q5U1X0 (Transcription initiation factor TFIID subunit 11 OS=Rattus norvegicus OX=10116 GN=Taf11 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.8e-18
Identity = 75/209 (35.89%), Postives = 115/209 (55.02%), Query Frame = 0


Query: 9   EAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKSIAAATHSGIPSAS 68
           E    E+  + P +P +AD   I                 G+ D K  AAA  S + S  
Sbjct: 14  EPGESEETRATPGAPVSADTEGIPEETDQV----------GDADSKE-AAAEESELKSQD 73

Query: 69  TTSMFVS----PSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKMQAILSQF 128
            + +  +    PS    AA K K D  +++E+  +V         D D++ KMQ ++S F
Sbjct: 74  VSDVTAAEREDPSLLTPAAKKLKLDTKDKKEKKQKV---------DEDEIQKMQILVSSF 133

Query: 129 TEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETSRVV 188
           +EEQ++RYE +RR+ F KA +KRL+ SI+GT  +S  + I +SGI+K+FVGE+VE +  V
Sbjct: 134 SEEQLNRYEMYRRSAFPKAAIKRLIQSITGT-SVSQNVVIAMSGISKVFVGEVVEEALDV 193

Query: 189 MTERNDSGPIRPCHLREAYRRLKLEGKIP 214
             +  +  P++P H+REA RRLK +G+IP
Sbjct: 194 CEKWGEMPPLQPKHMREAVRRLKSKGQIP 201

[Close]

BLAST of Lag0017634 vs. ExPASy TrEMBL
Match: A0A6J1FLN4 (transcription initiation factor TFIID subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111446328 PE=3 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.1e-102
Identity = 208/223 (93.27%), Postives = 216/223 (96.86%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKS-IAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTN+AA +  DALDLHDG+D+PKS  AAA
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAA 60

Query: 61  THSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120
           T+SGIPSASTTS+FVS SSNVSAAPKTK+DDDEEEEENVEVELAKFPSSGDPDKMAKMQA
Sbjct: 61  TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120

Query: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180
           ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE
Sbjct: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180

Query: 181 TSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           T+RVVMTERNDSG IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 TARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223

[Close]

BLAST of Lag0017634 vs. ExPASy TrEMBL
Match: A0A6J1KZI1 (transcription initiation factor TFIID subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111498496 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.0e-101
Identity = 205/224 (91.52%), Postives = 215/224 (95.98%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPK--SIAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTN+AA    DA+DLHDG+DDPK  + AA
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADAIDLHDGDDDPKTAAAAA 60

Query: 61  ATHSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKMQ 120
           AT+SG+PSASTTS+FVS SSN+SAAPKTK+DDDEEEEENVEVELAKFPSSGDPDKMAKMQ
Sbjct: 61  ATNSGVPSASTTSLFVSSSSNISAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQ 120

Query: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180
           AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV
Sbjct: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180

Query: 181 ETSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           ET+RVVMTERNDSG IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224

[Close]

BLAST of Lag0017634 vs. ExPASy TrEMBL
Match: A0A6J1DFN0 (transcription initiation factor TFIID subunit 11 OS=Momordica charantia OX=3673 GN=LOC111020384 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.3e-99
Identity = 205/227 (90.31%), Postives = 213/227 (93.83%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPK-----S 60
           MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTN+AA+   DALD HDG+DDPK     +
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAAS---DALDSHDGDDDPKAATAAA 60

Query: 61  IAAATHSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMA 120
            A ATHSGIPSA TTSMFVS SSNVSAAPKTKDDD+EEEEENVEVELAKFPSSGDPDKMA
Sbjct: 61  AAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMA 120

Query: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180
           KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG
Sbjct: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180

Query: 181 ELVETSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           ELVET+RVVMTERND+GPIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224

[Close]

BLAST of Lag0017634 vs. ExPASy TrEMBL
Match: A0A5D3D798 (Transcription initiation factor TFIID subunit 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001040 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.7e-96
Identity = 200/222 (90.09%), Postives = 207/222 (93.24%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKSIAAAT 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEI T +A   A DA DL DG+DDPKS + AT
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPVPA-DAFDLQDGDDDPKSASVAT 60

Query: 61  HSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKMQAI 120
           HS  P  STTSMFVS SS+VSAAPKTK+DD+EEEEENVEVELAKFPSSGDPDKMAKMQAI
Sbjct: 61  HSVTP-VSTTSMFVSSSSHVSAAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAI 120

Query: 121 LSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVET 180
           LSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVET
Sbjct: 121 LSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVET 180

Query: 181 SRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           +RVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ARVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 220

[Close]

BLAST of Lag0017634 vs. ExPASy TrEMBL
Match: A0A0A0L5S4 (TAFII28 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038160 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.9e-96
Identity = 199/222 (89.64%), Postives = 208/222 (93.69%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKSIAAAT 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEI T +A + A DA DL DG+DDPKS + AT
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPA-DAFDLQDGDDDPKSASVAT 60

Query: 61  HSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMAKMQAI 120
           HS  P ASTTSMFVS SS+VS APKTK+DD+EEEEENVEVELAKFPSSGDPDKMAKMQAI
Sbjct: 61  HSVAP-ASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQAI 120

Query: 121 LSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVET 180
           LSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVET
Sbjct: 121 LSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVET 180

Query: 181 SRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           +RVVMTERND+GPIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 220

[Close]

BLAST of Lag0017634 vs. TAIR 10
Match: AT4G20280.1 (TBP-associated factor 11 )

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-56
Identity = 129/227 (56.83%), Postives = 159/227 (70.04%), Query Frame = 0


Query: 1   MKQSKDPFEAAF-EEQEESPPNSP----SAADDLEIQTNIAAALADDALDLHDGEDDPKS 60
           MK SKDPFEAA  EEQEESPP SP       D  E          D  +++   +D+ + 
Sbjct: 1   MKHSKDPFEAAIEEEQEESPPESPVGGGGGGDGSE----------DGRIEIDQTQDEDER 60

Query: 61  IAAATHSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMA 120
                       + TS+ V+ + N     K KD+DDEEEEEN++VEL K+P+S DP KMA
Sbjct: 61  PVDVRRP--MKKAKTSVVVTEAKN-----KDKDEDDEEEEENMDVELTKYPTSSDPAKMA 120

Query: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180
           KMQ ILSQFTE+QMSRYESFRR+  Q+  MK+LL  ++G+QKI +PM IV  GIAKMFVG
Sbjct: 121 KMQTILSQFTEDQMSRYESFRRSALQRPQMKKLLIGVTGSQKIGMPMIIVACGIAKMFVG 180

Query: 181 ELVETSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           ELVET+RVVM ER +SGPIRPCH+RE+YRRLKLEGK+P++SVPRLFR
Sbjct: 181 ELVETARVVMAERKESGPIRPCHIRESYRRLKLEGKVPKRSVPRLFR 210

[Close]

BLAST of Lag0017634 vs. TAIR 10
Match: AT1G20000.1 (TBP-associated factor 11B )

HSP 1 Score: 164.9 bits (416), Expect = 7.6e-41
Identity = 108/223 (48.43%), Postives = 135/223 (60.54%), Query Frame = 0


Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNIAAALADDALDLHDGEDDPKSIAAAT 60
           MK SKDPFEAA EEQEESP         +E +  +              E D +++    
Sbjct: 32  MKHSKDPFEAAMEEQEESP---------VETEQTL--------------EGDERAVKKC- 91

Query: 61  HSGIPSASTTSMFVSPSSNVSAAPKTKDDDDEEEEENVEVELAKFPSSGDPDKMA-KMQA 120
                            ++V A  K KD          EVE  K  +  DP   A KMQ 
Sbjct: 92  ----------------KTSVVAEAKNKD----------EVEFTKNITGADPVTRANKMQK 151

Query: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180
           ILSQFTEEQMSRYESFRR+GF+K++M++L+  I+G  K+   M IVV GIAKMFVG+LVE
Sbjct: 152 ILSQFTEEQMSRYESFRRSGFKKSDMEKLVQRITGGPKMDDTMNIVVRGIAKMFVGDLVE 204

Query: 181 TSRVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223
           T+RVVM ER +SGPIRPCH+RE+YRRLKL+GK+P++SV RLFR
Sbjct: 212 TARVVMRERKESGPIRPCHIRESYRRLKLQGKVPQRSVQRLFR 204

The following BLAST results are available for this feature:

BLAST of Lag0017634 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940909.1	4.3e-102	93.27	transcription initiation factor TFIID subunit 11 [Cucurbita moschata]	[more]
KAG7028341.1	7.3e-102	93.27	Transcription initiation factor TFIID subunit 11 [Cucurbita argyrosperma subsp. ...	[more]
XP_023538856.1	1.2e-101	92.44	transcription initiation factor TFIID subunit 11 [Cucurbita pepo subsp. pepo]	[more]
XP_023005534.1	2.1e-101	91.52	transcription initiation factor TFIID subunit 11 [Cucurbita maxima]	[more]
KAG6596814.1	2.8e-101	92.83	Transcription initiation factor TFIID subunit 11, partial [Cucurbita argyrosperm...	[more]

BLAST of Lag0017634 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M565	1.8e-55	56.83	Transcription initiation factor TFIID subunit 11 OS=Arabidopsis thaliana OX=3702...	[more]
F4HR03	1.1e-39	48.43	Transcription initiation factor TFIID subunit 11b OS=Arabidopsis thaliana OX=370...	[more]
Q99JX1	2.1e-19	40.59	Transcription initiation factor TFIID subunit 11 OS=Mus musculus OX=10090 GN=Taf...	[more]
Q54XM9	1.8e-18	36.16	Transcription initiation factor TFIID subunit 11 OS=Dictyostelium discoideum OX=...	[more]
Q5U1X0	8.8e-18	35.89	Transcription initiation factor TFIID subunit 11 OS=Rattus norvegicus OX=10116 G...	[more]

BLAST of Lag0017634 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLN4	2.1e-102	93.27	transcription initiation factor TFIID subunit 11 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KZI1	1.0e-101	91.52	transcription initiation factor TFIID subunit 11 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1DFN0	1.3e-99	90.31	transcription initiation factor TFIID subunit 11 OS=Momordica charantia OX=3673 ...	[more]
A0A5D3D798	1.7e-96	90.09	Transcription initiation factor TFIID subunit 11 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0L5S4	2.9e-96	89.64	TAFII28 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038160 PE=...	[more]

BLAST of Lag0017634 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20280.1	1.3e-56	56.83	TBP-associated factor 11	[more]
AT1G20000.1	7.6e-41	48.43	TBP-associated factor 11B	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 124..213 e-value: 2.7E-31 score: 109.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 124..213
IPR006809	TAFII28-like protein domain	PFAM	PF04719	TAFII28	coord: 120..205 e-value: 1.9E-31 score: 108.0
IPR006809	TAFII28-like protein domain	CDD	cd08048	TAF11	coord: 124..207 e-value: 1.14683E-39 score: 129.609
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..83
None	No IPR available	PANTHER	PTHR13218:SF19	TAFII28-LIKE PROTEIN-RELATED	coord: 1..222
IPR045127	Transcription initiation factor TFIID subunit 11-like	PANTHER	PTHR13218	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED	coord: 1..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017634.1	Lag0017634.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006413	translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005669	transcription factor TFIID complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003743	translation initiation factor activity