Lag0017633 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017633
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr5: 6158302 .. 6160100 (+)
RNA-Seq ExpressionLag0017633
SyntenyLag0017633
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCAAGCCCATTGGTTCCCGCTGGCCCCTGGTTATTGGTTGCTCAGCGTAGATGCCGCTCATGATGACCCCCAAAACAGAGGGGGGGGGGTTGGTTGGTTAGCGCGTGACTCCTCCGGTTCTACAATCTGTTCAGGCTTCAAGAGAATCGAAGGCAATCGACCTGTCAGAATGCTGGAGATGATGACGATTCTCGAAGGTATTAGAAGCTTGCTAATTGCGAGAGCTTCACGCCAAAATCTGGATATCCCGCCGGTGATGGTAGTCTCTGATGCCATCGGCGTTATTAATCTGTTGAACAAAACAGATTTTGATCTAATGGAAATCTCGTTCTTAGTCGAAGATTTCGAGAGTCTGGCCGTTGATTTCGAGTTCATCTCCTTCGCCCACATCCCTCGTTCGCAAAATGTCGACGCTCACAATCTGGCGCGTTTTGCCGCTTTTGGGTCTTTTGGGTGTAACATATGGGTTTTGGATCCTTCTCCCAATTTCGAAGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTTTGGGTCGGTTTGTACCCGAATTGCTAATCCCCCTCCCTAGGGTGGTAAATGTTCCTTCCTTTTCGCAGTAACGAAGTTTATTTTCAAAAAAAAAAAACCTTATTATAGACTTTTTTTTTAGAACACCCTACTATTTACTTAAAAACTCTTTAAAAAAAAATAATCAAGCGTTTTTCTTAAAATGGTTTGTTTCCAATCTCATTTTTTAATAAGCCAATTTGAGTGGTCGCCAAACATTAAAATAAATTCAAAATGATTTTCTTTTTCAAAAATTAAACACATGAAAAGTGTTTAATTAAGTTTTTAATTAAAACTTAATTTAATTTAGGGCAAATTGCAAAAACCACCCCTCAAGTATTGTGTTTGTAACAATTACACCCTTAAAGTTTCAATTGTAAAAATTAAACCCTCAAACTTTCAAAAGTGTAAAAATTAAAACCCTAAACTTTTGAATGTTAAAATTAAACCCCCAATCTATCAAAAATGTAAAAATTGAGTCTATTTTATATTTCTCCTTCTCTCCCCTCTTTCTCTCTCTTCTTTCTCTCTCTACCTCTTCATCCCTTCCATCACCCTCTCTCTCTACTTTCTCCCTCTAACTATCCCTCCTTCATTCTCTCTGCAATTTGAACATCCTCTCTCTCTATTCTCCTTCTACCTCTCCATCCTTTCTTCTTTCTCTCAAATTGATTGAATTAAGAGACTAAAATTCTGCTGATGAATTAGATTCAATTAATTGCGAAAATCAAGGAGATACAGTGGAATGAGAAGGAAAATTAGTTAGCAGGACGAGAGATCTCATTGAAATAGCTGGAAATCTACAAAGTTTTGTCGTTAGAACTCAAACAAATATATTTACAAAAAGAAAATTGCAGTAATAAGTGAAGATCAGATGCGGGTTTCATAATTTTGAGAGAGAGATGACATCCTGGAAAGCCATTGTATGGTCATCAAAAAAGAATTCATAATAAATAATCAAATTCACTAAAGAAAGCACAAGGGCTAAAACACGAATCCTTTCTAAAAGCCTGCCAATCAGAAACAAAATCTTGGAAACTTGAGTTGAAAAAACAGAGATTAACTACTAAAATGCCTCTTTGAGTTGCCTTTCACTGAATTATACATTCTAAAAACTGTAACATAACATGTAAGGTTTCACATTTATTTAGTTTTCTTGTCATCTTCTTTTATGGCAATCGCATTCGTTGCTTCGGCTCCTTGATTTTCTTCACCAGCCATGAATAG

mRNA sequence

ATGAGTCAAGCCCATTGGTTCCCGCTGGCCCCTGGTTATTGGTTGCTCAGCGTAGATGCCGCTCATGATGACCCCCAAAACAGAGGGGGGGGGGTTGGTTGGTTAGCGCGTGACTCCTCCGGTTCTACAATCTGTTCAGGCTTCAAGAGAATCGAAGGCAATCGACCTGTCAGAATGCTGGAGATGATGACGATTCTCGAAGGTATTAGAAGCTTGCTAATTGCGAGAGCTTCACGCCAAAATCTGGATATCCCGCCGGTGATGGTAGTCTCTGATGCCATCGGCGTTATTAATCTGTTGAACAAAACAGATTTTGATCTAATGGAAATCTCGTTCTTAGTCGAAGATTTCGAGAGTCTGGCCGTTGATTTCGAGTTCATCTCCTTCGCCCACATCCCTCGTTCGCAAAATGTCGACGCTCACAATCTGGCGCGTTTTGCCGCTTTTGGTTTTCTTGTCATCTTCTTTTATGGCAATCGCATTCGTTGCTTCGGCTCCTTGATTTTCTTCACCAGCCATGAATAG

Coding sequence (CDS)

ATGAGTCAAGCCCATTGGTTCCCGCTGGCCCCTGGTTATTGGTTGCTCAGCGTAGATGCCGCTCATGATGACCCCCAAAACAGAGGGGGGGGGGTTGGTTGGTTAGCGCGTGACTCCTCCGGTTCTACAATCTGTTCAGGCTTCAAGAGAATCGAAGGCAATCGACCTGTCAGAATGCTGGAGATGATGACGATTCTCGAAGGTATTAGAAGCTTGCTAATTGCGAGAGCTTCACGCCAAAATCTGGATATCCCGCCGGTGATGGTAGTCTCTGATGCCATCGGCGTTATTAATCTGTTGAACAAAACAGATTTTGATCTAATGGAAATCTCGTTCTTAGTCGAAGATTTCGAGAGTCTGGCCGTTGATTTCGAGTTCATCTCCTTCGCCCACATCCCTCGTTCGCAAAATGTCGACGCTCACAATCTGGCGCGTTTTGCCGCTTTTGGTTTTCTTGTCATCTTCTTTTATGGCAATCGCATTCGTTGCTTCGGCTCCTTGATTTTCTTCACCAGCCATGAATAG

Protein sequence

MSQAHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDFDLMEISFLVEDFESLAVDFEFISFAHIPRSQNVDAHNLARFAAFGFLVIFFYGNRIRCFGSLIFFTSHE
Homology
BLAST of Lag0017633 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 9.3e-12
Identity = 51/144 (35.42%), Postives = 74/144 (51.39%), Query Frame = 0

Query: 4   AHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMM 63
           A W P     W L+ +AA     N  GG+GW+ RD  G  I +  + I   R +  LE+M
Sbjct: 77  AQWKPPTSNSWKLNTNAAWRADTNT-GGIGWILRDEKGEVIKASCRIIRAERNITYLEVM 136

Query: 64  TILEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDFDLMEISFLVEDFESLAVD 123
            I EG+R++      RQ     P+ + SD++  I+LL++   D  EI +L+E+   +  D
Sbjct: 137 AICEGLRAI------RQE-HCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKD 196

Query: 124 FEFISFAHIPRSQNVDAHNLARFA 148
            E +S  HI R  N  AH LAR A
Sbjct: 197 MEIVSMRHISREANKVAHGLARRA 212

BLAST of Lag0017633 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-11
Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 0

Query: 4   AHWFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMM 63
           A W P     W L+ DAA     N  GG+GW+ RD  G  I +  + I   R +  LE+M
Sbjct: 77  ARWKPPTSNSWKLNTDAAWRADTNT-GGIGWILRDEKGEVIKADCRIIRTERNITYLEVM 136

Query: 64  TILEGIRSLLIARASR-QNLDIPPVMVVSDAIGVINLLNKTDFDLMEISFLVEDFESLAV 123
            I EG+R++        Q     P+ + SD++  I+LL++   D  EI +L+E+   +  
Sbjct: 137 AICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMME 196

Query: 124 DFEFISFAHIPRSQNVDAHNLARFA 148
           D + +S  HI R  N  AH+LAR A
Sbjct: 197 DMKIVSMRHISREANKVAHDLARRA 220

BLAST of Lag0017633 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-10
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 0

Query: 6   WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTI 65
           W P     W L+ DA+  D  +R GG+GW+ R   G  + +G + +E    V++LE   I
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHR-GGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAI 130

Query: 66  LEGIRSLLIARASRQNLDI-PPVMVVSDAIGVINLLNKTDFDLMEISFLVEDFESLAVDF 125
           LEG+R+L        NL +  P+ + +D+  V +LLN+   DL +  ++VE+  +L    
Sbjct: 131 LEGLRNL-------TNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSC 190

Query: 126 EFISFAHIPRSQNVDAHNLARFAA 149
           E ++FA + R  N  AH+LA+ A+
Sbjct: 191 EILAFAKVGRETNGCAHSLAQRAS 206

BLAST of Lag0017633 vs. NCBI nr
Match: XP_015381856.1 (uncharacterized protein LOC107175052 [Citrus sinensis])

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-08
Identity = 46/142 (32.39%), Postives = 74/142 (52.11%), Query Frame = 0

Query: 6   WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTI 65
           W P   G+  ++VDAA D+ +NR  G+G + R+  G  I +  K  + +  V M E   +
Sbjct: 113 WCPPEEGWIKINVDAAMDE-ENRLAGLGVVIRNFKGEIIAAAVKTEKNSGNVEMAEAKAV 172

Query: 66  LEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDFDLMEISFLVEDFESLAVDFE 125
           L G++  ++A A++       V+V  D+ GVI L+N     L EI +++ D       F+
Sbjct: 173 LWGLQVAIMAEATQ-------VIVEYDSKGVIELINNKMGTLTEIVWVIFDILETKKSFQ 232

Query: 126 FISFAHIPRSQNVDAHNLARFA 148
                H+ RS NV AH+LA+ A
Sbjct: 233 NFKAQHVSRSCNVSAHSLAKLA 246

BLAST of Lag0017633 vs. NCBI nr
Match: XP_024190234.1 (uncharacterized protein LOC112194221 [Rosa chinensis])

HSP 1 Score: 68.6 bits (166), Expect = 6.3e-08
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 0

Query: 6    WFPLAPGYWLLSVDAAHDDPQNRGGGVGWLARDSSGSTICSGFKRIEGNRPVRMLEMMTI 65
            W P       L+ DAA D  + +   +G + RD  G   C+G K + GN  +  +E + +
Sbjct: 1060 WRPPTAPKLKLNTDAAIDYKKKK-ADLGMVVRDGEGKLKCAGHKVLPGNPSIVAIEALAV 1119

Query: 66   LEGIRSLLIARASRQNLDIPPVMVVSDAIGVINLLNKTDFDLMEISFLVEDFESLAVDFE 125
              G+  LL   A  QNL     +V SD+  VI+ LNKT+ DL     +++D + LA  FE
Sbjct: 1120 YHGL--LLYREAGFQNL-----VVESDSTIVIDALNKTELDLSVEGGVLDDIKCLASTFE 1179

Query: 126  FISFAHIPRSQNVDAHNLARFA 148
             + +  + R  N+ AH +A+ A
Sbjct: 1180 SVPWKKVNREGNIAAHKMAKHA 1193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143535.19.3e-1235.42uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022156777.11.6e-1134.48uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022155262.11.8e-1033.33uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_015381856.14.8e-0832.39uncharacterized protein LOC107175052 [Citrus sinensis][more]
XP_024190234.16.3e-0832.39uncharacterized protein LOC112194221 [Rosa chinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 26..147
e-value: 1.3E-12
score: 47.6
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 15..150
e-value: 3.5E-11
score: 45.2
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 3..146
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 3..146
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 16..145
e-value: 3.87977E-17
score: 71.1912
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 13..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017633.1Lag0017633.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity