Lag0017590 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017590
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 5722453 .. 5722880 (-)
RNA-Seq Expression	Lag0017590
Synteny	Lag0017590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGACTCCGACGACGTCGCCGCCCGTCCCTTCCACCACCGCTACAAGGGCCTCTTCATGGTCCACACCAAAGCCCTCAAAGGCAAGGGCGTCTGGTACTGGTCTCACCTCGAACCCCTTCTCCTTAAAAACTTCGACACCGGCTTCCCCAACGTCGTCAAGCTCTGCTACTCCTTATGTGACGCCGTTTTCTCCGCTTCCAACCCTTCCTGCACTGCCTCTGAGCATCTCAAGTGAAGGACATGTCCTAATTTCAACTCCCTCTAAAAAACCCTATCGTTTCTTATAAGAGGGTCGTCGTCGCCACCGATGACGCCGATTCCTTCTACGAGATTCTGCCGTTGACGGTGTCGACCTGTCTCAAGTTTATGGTGGTCCGTTCTCGTCATTTCCACCAGTGTTTTCGGGTGGGAAAGAGGATTTAG

mRNA sequence

ATGAGAGACTCCGACGACGTCGCCGCCCGTCCCTTCCACCACCGCTACAAGGGCCTCTTCATGGTCCACACCAAAGCCCTCAAAGGCAAGGGCGTCTGGTACTGGTCTCACCTCGAACCCCTTCTCCTTAAAAACTTCGACACCGGCTTCCCCAACGTCGTCAAGCTCTGCTACTCCTTATGTGACGCCGTTTTCTCCGCTTCCAACCCTTCCTGCACTGCCTCTGAGCATCTCAAGGTCGTCGTCGCCACCGATGACGCCGATTCCTTCTACGAGATTCTGCCGTTGACGGTGTCGACCTGTCTCAAGTTTATGGTGGTCCGTTCTCGTCATTTCCACCAGTGTTTTCGGGTGGGAAAGAGGATTTAG

Coding sequence (CDS)

ATGAGAGACTCCGACGACGTCGCCGCCCGTCCCTTCCACCACCGCTACAAGGGCCTCTTCATGGTCCACACCAAAGCCCTCAAAGGCAAGGGCGTCTGGTACTGGTCTCACCTCGAACCCCTTCTCCTTAAAAACTTCGACACCGGCTTCCCCAACGTCGTCAAGCTCTGCTACTCCTTATGTGACGCCGTTTTCTCCGCTTCCAACCCTTCCTGCACTGCCTCTGAGCATCTCAAGGTCGTCGTCGCCACCGATGACGCCGATTCCTTCTACGAGATTCTGCCGTTGACGGTGTCGACCTGTCTCAAGTTTATGGTGGTCCGTTCTCGTCATTTCCACCAGTGTTTTCGGGTGGGAAAGAGGATTTAG

Protein sequence

MRDSDDVAARPFHHRYKGLFMVHTKALKGKGVWYWSHLEPLLLKNFDTGFPNVVKLCYSLCDAVFSASNPSCTASEHLKVVVATDDADSFYEILPLTVSTCLKFMVVRSRHFHQCFRVGKRI

Homology

[Close]

BLAST of Lag0017590 vs. NCBI nr
Match: XP_008448913.1 (PREDICTED: uncharacterized protein LOC103490938 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 76/126 (60.32%), Postives = 81/126 (64.29%), Query Frame = 0


Query: 1   MRDSDD---VAARPFHHRYKGLFMVHTKALKGKGVWYWSHLEPLLLKNFDTGFPNVVKLC 60
           M DSDD   VAA+  H RY+GL MV TKALKGKG WYWSHLEPLLLKN DTGFP  VKL 
Sbjct: 50  MADSDDPAAVAAQAVHRRYEGLLMVRTKALKGKGAWYWSHLEPLLLKNSDTGFPKAVKLR 109

Query: 61  YSLCDAVFSASNPSCTASEHLK---------------VVVA----------TDDADSFYE 99
            SLCDAVFSASNPS TASEHLK               V V+          +D  DSFY+
Sbjct: 110 CSLCDAVFSASNPSRTASEHLKRGTCPNFNSPSKTPLVSVSPVSRKRNTADSDGGDSFYD 169

[Close]

BLAST of Lag0017590 vs. NCBI nr
Match: TYK19471.1 (uncharacterized protein E5676_scaffold443G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 76/126 (60.32%), Postives = 81/126 (64.29%), Query Frame = 0


Query: 1   MRDSDD---VAARPFHHRYKGLFMVHTKALKGKGVWYWSHLEPLLLKNFDTGFPNVVKLC 60
           M DSDD   VAA+  H RY+GL MV TKALKGKG WYWSHLEPLLLKN DTGFP  VKL 
Sbjct: 1   MADSDDPAAVAAQAVHRRYEGLLMVRTKALKGKGAWYWSHLEPLLLKNSDTGFPKAVKLR 60

Query: 61  YSLCDAVFSASNPSCTASEHLK---------------VVVA----------TDDADSFYE 99
            SLCDAVFSASNPS TASEHLK               V V+          +D  DSFY+
Sbjct: 61  CSLCDAVFSASNPSRTASEHLKRGTCPNFNSPSKTPLVSVSPVSRKRNTADSDGGDSFYD 120

[Close]

BLAST of Lag0017590 vs. NCBI nr
Match: XP_004147980.2 (uncharacterized protein LOC101211448 [Cucumis sativus] >KGN55921.1 hypothetical protein Csa_011669 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 74/126 (58.73%), Postives = 78/126 (61.90%), Query Frame = 0


Query: 1   MRDSDD---VAARPFHHRYKGLFMVHTKALKGKGVWYWSHLEPLLLKNFDTGFPNVVKLC 60
           M DSDD   VAA+  H RY+GL MV TKALKGKG WYWSHLEPLLLKN DTGFP  VKL 
Sbjct: 50  MADSDDPAAVAAQAVHRRYEGLLMVRTKALKGKGAWYWSHLEPLLLKNSDTGFPKAVKLR 109

Query: 61  YSLCDAVFSASNPSCTASEHLK-------------------------VVVATDDADSFYE 99
            SLCDAVFSASNPS TASEHLK                             +D  DSFY+
Sbjct: 110 CSLCDAVFSASNPSRTASEHLKRGTCPNFYSPSKTPLLSVSPVSRKRNTADSDGGDSFYD 169

[Close]

BLAST of Lag0017590 vs. NCBI nr
Match: KAG6577592.1 (hypothetical protein SDJN03_25166, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015640.1 hypothetical protein SDJN02_23277, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 63/79 (79.75%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MRDSDDVAARPFHHRYKGLFMVHTKALKGKGVWYWSHLEPLLLKNFDTGFPNVVKLCYSL 60
          M DSDD  AR  H RY+GL MV TKALKGKG WYWSHLEPLLLKN DTGFP  VKL  SL
Sbjct: 1  MADSDDATARAVHRRYEGLLMVRTKALKGKGAWYWSHLEPLLLKNSDTGFPKAVKLRCSL 60

Query: 61 CDAVFSASNPSCTASEHLK 80
          CDAVFSASNPS TASEHLK
Sbjct: 61 CDAVFSASNPSRTASEHLK 79

[Close]

BLAST of Lag0017590 vs. NCBI nr
Match: XP_023552160.1 (uncharacterized protein LOC111809920 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 63/79 (79.75%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MRDSDDVAARPFHHRYKGLFMVHTKALKGKGVWYWSHLEPLLLKNFDTGFPNVVKLCYSL 60
          M DSDD  AR  H RY+GL MV TKALKGKG WYWSHLEPLLLKN DTGFP  VKL  SL
Sbjct: 1  MADSDDATARAVHRRYEGLLMVRTKALKGKGAWYWSHLEPLLLKNSDTGFPKAVKLRCSL 60

Query: 61 CDAVFSASNPSCTASEHLK 80
          CDAVFSASNPS TASEHLK
Sbjct: 61 CDAVFSASNPSRTASEHLK 79

The following BLAST results are available for this feature:

BLAST of Lag0017590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448913.1	1.9e-27	60.32	PREDICTED: uncharacterized protein LOC103490938 [Cucumis melo]	[more]
TYK19471.1	1.9e-27	60.32	uncharacterized protein E5676_scaffold443G001260 [Cucumis melo var. makuwa]	[more]
XP_004147980.2	2.5e-27	58.73	uncharacterized protein LOC101211448 [Cucumis sativus] >KGN55921.1 hypothetical ...	[more]
KAG6577592.1	2.5e-27	79.75	hypothetical protein SDJN03_25166, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023552160.1	2.5e-27	79.75	uncharacterized protein LOC111809920 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0017590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32166:SF92	F16P17.2 PROTEIN	coord: 4..96
None	No IPR available	PANTHER	PTHR32166	OSJNBA0013A04.12 PROTEIN	coord: 4..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017590.1	Lag0017590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane