Lag0017571 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017571
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr5: 5485028 .. 5485621 (-)
RNA-Seq Expression	Lag0017571
Synteny	Lag0017571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACAAAAACTAGATGGACTGACGGTGTCTCAGATGCAATCAGGTGCCGCGCATTCTTCTTCACACTGACAGGATCAGCCAAGCACTGGTTTGAAAGATTGAAGAGGAGATCCATCACCTCTTTCAAGGAATTAGCCCGAGCGTTCCTCGCACAGTTTATGGGATCCAGAGAACTTCACAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCAGGTGAGAGCTTGCGTGATTACATAACGCGTTTCAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTCGTAGCCATCACAGTCGGGCTGGAAGACGAAAAACTGCTCAATTCAATAGGTAAGAGTCAACCTCAAACCTATGCAGAGTTCGTCTCCCGGGCACAGAAATACATGAGCGCAGAAGAGTTGCTTAAGTCAAAGAAGTTAGAACGAGAACACAAGAGGTATTCTTCATCTGACCACGACAGTAAGAGGGACAAGAGGCAACGAATAGACAAAAGAGGTCGAGGCCGACCAGACCAAGGAGGCTACTTGAAGAAGTTTGAGAAGTACACCCCTACTTCAATCCCACAGGAGTAG

mRNA sequence

ATGCCTACAAAAACTAGATGGACTGACGGTGTCTCAGATGCAATCAGGTGCCGCGCATTCTTCTTCACACTGACAGGATCAGCCAAGCACTGGTTTGAAAGATTGAAGAGGAGATCCATCACCTCTTTCAAGGAATTAGCCCGAGCGTTCCTCGCACAGTTTATGGGATCCAGAGAACTTCACAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCAGGTGAGAGCTTGCGTGATTACATAACGCGTTTCAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTCGTAGCCATCACAGTCGGGCTGGAAGACGAAAAACTGCTCAATTCAATAGGTAAGAGTCAACCTCAAACCTATGCAGAGTTCGTCTCCCGGGCACAGAAATACATGAGCGCAGAAGAGTTGCTTAAGTCAAAGAAGTTAGAACGAGAACACAAGAGGTATTCTTCATCTGACCACGACAGTAAGAGGGACAAGAGGCAACGAATAGACAAAAGAGGTCGAGGCCGACCAGACCAAGGAGGCTACTTGAAGAAGTTTGAGAAGTACACCCCTACTTCAATCCCACAGGAGTAG

Coding sequence (CDS)

ATGCCTACAAAAACTAGATGGACTGACGGTGTCTCAGATGCAATCAGGTGCCGCGCATTCTTCTTCACACTGACAGGATCAGCCAAGCACTGGTTTGAAAGATTGAAGAGGAGATCCATCACCTCTTTCAAGGAATTAGCCCGAGCGTTCCTCGCACAGTTTATGGGATCCAGAGAACTTCACAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCAGGTGAGAGCTTGCGTGATTACATAACGCGTTTCAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTCGTAGCCATCACAGTCGGGCTGGAAGACGAAAAACTGCTCAATTCAATAGGTAAGAGTCAACCTCAAACCTATGCAGAGTTCGTCTCCCGGGCACAGAAATACATGAGCGCAGAAGAGTTGCTTAAGTCAAAGAAGTTAGAACGAGAACACAAGAGGTATTCTTCATCTGACCACGACAGTAAGAGGGACAAGAGGCAACGAATAGACAAAAGAGGTCGAGGCCGACCAGACCAAGGAGGCTACTTGAAGAAGTTTGAGAAGTACACCCCTACTTCAATCCCACAGGAGTAG

Protein sequence

MPTKTRWTDGVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQTYAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRGRPDQGGYLKKFEKYTPTSIPQE

Homology

[Close]

BLAST of Lag0017571 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 162.5 bits (410), Expect = 3.6e-36
Identity = 97/193 (50.26%), Postives = 125/193 (64.77%), Query Frame = 0


Query: 7   WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPH 66
           W D  GVS+A+RCR F  TL GSA+ WF +LKR SI+SFK LARAF+ QF+G R   +P 
Sbjct: 217 WMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPV 276

Query: 67  INLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQT 126
             LLT+KQ+  ESLRDY+ RFN+E LQVEG ++  +L+A   G+ DE L  S GK  P T
Sbjct: 277 AYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNT 336

Query: 127 YAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRGRPDQGGYLK 186
           ++E +SRAQ+YMSA E   SK+ E + KR +    +   DK Q      R R  Q    +
Sbjct: 337 FSEALSRAQRYMSAGEFFYSKR-EPDGKR-TDPKRERSGDKPQGSRWEKRDRSSQKDPPR 396

Query: 187 KFEKYTPTSIPQE 198
           KFEKYTPT++P E
Sbjct: 397 KFEKYTPTTVPIE 407

[Close]

BLAST of Lag0017571 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 6.1e-36
Identity = 95/199 (47.74%), Postives = 129/199 (64.82%), Query Frame = 0


Query: 7   WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPH 66
           WTD  G+++AIRCR F FTLTGS + WF++LKR+SI+SFKELARAF+ QF G     +P 
Sbjct: 33  WTDIYGITEAIRCRVFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWNRSRPV 92

Query: 67  INLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQT 126
             LLT+KQ+  ESL+DY+ RFN E LQVEG ++   L+    G++DE+L+ S GK    T
Sbjct: 93  AYLLTIKQKATESLKDYVARFNKEKLQVEGLTDAVVLLVFISGVKDEQLVFSFGKRTSGT 152

Query: 127 YAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKR------GRGRPD 186
           ++E  SRAQ YMS  EL+ SK+  +   +Y+  +   KR   +R   R      G+GR  
Sbjct: 153 FSEARSRAQTYMSVGELIHSKRDPK--GKYADYNTKRKRPGEKRHGLRWERSDSGQGRLV 212

Query: 187 QGGYLKKFEKYTPTSIPQE 198
           Q    +KFEKYTPT++P E
Sbjct: 213 QRDPQRKFEKYTPTTVPLE 229

[Close]

BLAST of Lag0017571 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 8.0e-36
Identity = 96/189 (50.79%), Postives = 125/189 (66.14%), Query Frame = 0


Query: 7   WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPH 66
           W D   + +AIRCR F FTLTGSA++WF +LKR SI+SFKELA AF+ QF+G R   KP 
Sbjct: 33  WADIYDIREAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPV 92

Query: 67  INLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQT 126
             LLT+KQ+  ESL++Y+ RFN+E LQVEG ++  AL+A   G++DE+L+ S GK  P T
Sbjct: 93  TYLLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGT 152

Query: 127 YAEFVSRAQKYMSAEELLK-SKKLEREHKRYSSSDHDSKRDKRQRI----DKRGRGRPDQ 186
           + E +SRAQKYMSA EL+  S+ LERE   YS+   + + +KR R        G GR  Q
Sbjct: 153 FMEALSRAQKYMSAGELIHLSRDLERERANYSTK-RERRGEKRHRSSWERSDSGHGRLVQ 212

Query: 187 GGYLKKFEK 189
                KFEK
Sbjct: 213 RDPQLKFEK 220

[Close]

BLAST of Lag0017571 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 7.8e-31
Identity = 82/171 (47.95%), Postives = 108/171 (63.16%), Query Frame = 0


Query: 7   WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPH 66
           W D  GVSDAIRCR F  TL GSA+ WF +LKR SI+SFK LARAF+ QF+G R   +P 
Sbjct: 122 WMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPV 181

Query: 67  INLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQT 126
             LLT+KQ+  ESL DY+ RFN+E LQ+EG ++  +L+A   G+ DE L  S  K  P T
Sbjct: 182 AYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRTPST 241

Query: 127 YAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRG 176
           ++E +SRAQ+YMSA E   SK+     +     +    + +  R +KR RG
Sbjct: 242 FSEALSRAQRYMSASEFCYSKREPDGKRTDQKRERSGDKPQGSRWEKRDRG 292

[Close]

BLAST of Lag0017571 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 142.1 bits (357), Expect = 5.0e-30
Identity = 86/172 (50.00%), Postives = 113/172 (65.70%), Query Frame = 0


Query: 7   WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPH 66
           W D  GVS+A++CR F  TL+GSA+ WF +LKR SI+SFK LA+AF+ QF+G R   +P 
Sbjct: 37  WMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPV 96

Query: 67  INLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQT 126
             LLT+KQ+  ESL DY+ RFN+E LQVEG +   +L+A    + DE L  S GK  P T
Sbjct: 97  AYLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPST 156

Query: 127 YAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQ--RIDKRGR 175
           ++E +SRAQKYMSA E   SK+ E E K+ S  + +   DK Q  R +KR R
Sbjct: 157 FSEALSRAQKYMSAGEFFFSKR-EPEGKQ-SDQNRERSGDKPQWSRWEKRDR 206

[Close]

BLAST of Lag0017571 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.7e-36
Identity = 97/193 (50.26%), Postives = 125/193 (64.77%), Query Frame = 0


Query: 7   WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPH 66
           W D  GVS+A+RCR F  TL GSA+ WF +LKR SI+SFK LARAF+ QF+G R   +P 
Sbjct: 217 WMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPV 276

Query: 67  INLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQT 126
             LLT+KQ+  ESLRDY+ RFN+E LQVEG ++  +L+A   G+ DE L  S GK  P T
Sbjct: 277 AYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNT 336

Query: 127 YAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRGRPDQGGYLK 186
           ++E +SRAQ+YMSA E   SK+ E + KR +    +   DK Q      R R  Q    +
Sbjct: 337 FSEALSRAQRYMSAGEFFYSKR-EPDGKR-TDPKRERSGDKPQGSRWEKRDRSSQKDPPR 396

Query: 187 KFEKYTPTSIPQE 198
           KFEKYTPT++P E
Sbjct: 397 KFEKYTPTTVPIE 407

[Close]

BLAST of Lag0017571 vs. ExPASy TrEMBL
Match: A0A6J1D3B7 (uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016619 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36
Identity = 95/199 (47.74%), Postives = 129/199 (64.82%), Query Frame = 0


Query: 7   WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPH 66
           WTD  G+++AIRCR F FTLTGS + WF++LKR+SI+SFKELARAF+ QF G     +P 
Sbjct: 33  WTDIYGITEAIRCRVFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWNRSRPV 92

Query: 67  INLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQT 126
             LLT+KQ+  ESL+DY+ RFN E LQVEG ++   L+    G++DE+L+ S GK    T
Sbjct: 93  AYLLTIKQKATESLKDYVARFNKEKLQVEGLTDAVVLLVFISGVKDEQLVFSFGKRTSGT 152

Query: 127 YAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKR------GRGRPD 186
           ++E  SRAQ YMS  EL+ SK+  +   +Y+  +   KR   +R   R      G+GR  
Sbjct: 153 FSEARSRAQTYMSVGELIHSKRDPK--GKYADYNTKRKRPGEKRHGLRWERSDSGQGRLV 212

Query: 187 QGGYLKKFEKYTPTSIPQE 198
           Q    +KFEKYTPT++P E
Sbjct: 213 QRDPQRKFEKYTPTTVPLE 229

[Close]

BLAST of Lag0017571 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.9e-36
Identity = 96/189 (50.79%), Postives = 125/189 (66.14%), Query Frame = 0


Query: 7   WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPH 66
           W D   + +AIRCR F FTLTGSA++WF +LKR SI+SFKELA AF+ QF+G R   KP 
Sbjct: 33  WADIYDIREAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPV 92

Query: 67  INLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQT 126
             LLT+KQ+  ESL++Y+ RFN+E LQVEG ++  AL+A   G++DE+L+ S GK  P T
Sbjct: 93  TYLLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGT 152

Query: 127 YAEFVSRAQKYMSAEELLK-SKKLEREHKRYSSSDHDSKRDKRQRI----DKRGRGRPDQ 186
           + E +SRAQKYMSA EL+  S+ LERE   YS+   + + +KR R        G GR  Q
Sbjct: 153 FMEALSRAQKYMSAGELIHLSRDLERERANYSTK-RERRGEKRHRSSWERSDSGHGRLVQ 212

Query: 187 GGYLKKFEK 189
                KFEK
Sbjct: 213 RDPQLKFEK 220

[Close]

BLAST of Lag0017571 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 3.8e-31
Identity = 82/171 (47.95%), Postives = 108/171 (63.16%), Query Frame = 0


Query: 7   WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPH 66
           W D  GVSDAIRCR F  TL GSA+ WF +LKR SI+SFK LARAF+ QF+G R   +P 
Sbjct: 122 WMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPV 181

Query: 67  INLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQT 126
             LLT+KQ+  ESL DY+ RFN+E LQ+EG ++  +L+A   G+ DE L  S  K  P T
Sbjct: 182 AYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRTPST 241

Query: 127 YAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQRIDKRGRG 176
           ++E +SRAQ+YMSA E   SK+     +     +    + +  R +KR RG
Sbjct: 242 FSEALSRAQRYMSASEFCYSKREPDGKRTDQKRERSGDKPQGSRWEKRDRG 292

[Close]

BLAST of Lag0017571 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-30
Identity = 86/172 (50.00%), Postives = 113/172 (65.70%), Query Frame = 0


Query: 7   WTD--GVSDAIRCRAFFFTLTGSAKHWFERLKRRSITSFKELARAFLAQFMGSRELHKPH 66
           W D  GVS+A++CR F  TL+GSA+ WF +LKR SI+SFK LA+AF+ QF+G R   +P 
Sbjct: 37  WMDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPV 96

Query: 67  INLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITVGLEDEKLLNSIGKSQPQT 126
             LLT+KQ+  ESL DY+ RFN+E LQVEG +   +L+A    + DE L  S GK  P T
Sbjct: 97  AYLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPST 156

Query: 127 YAEFVSRAQKYMSAEELLKSKKLEREHKRYSSSDHDSKRDKRQ--RIDKRGR 175
           ++E +SRAQKYMSA E   SK+ E E K+ S  + +   DK Q  R +KR R
Sbjct: 157 FSEALSRAQKYMSAGEFFFSKR-EPEGKQ-SDQNRERSGDKPQWSRWEKRDR 206

The following BLAST results are available for this feature:

BLAST of Lag0017571 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	3.6e-36	50.26	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022147761.1	6.1e-36	47.74	uncharacterized protein LOC111016619 [Momordica charantia]	[more]
XP_022158344.1	8.0e-36	50.79	uncharacterized protein LOC111024851 [Momordica charantia]	[more]
XP_022159109.1	7.8e-31	47.95	uncharacterized protein LOC111025548 [Momordica charantia]	[more]
XP_022150035.1	5.0e-30	50.00	uncharacterized protein LOC111018307 [Momordica charantia]	[more]

BLAST of Lag0017571 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWY0	1.7e-36	50.26	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1D3B7	3.0e-36	47.74	uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DZ49	3.9e-36	50.79	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1E1E7	3.8e-31	47.95	uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1D7D2	2.4e-30	50.00	uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 20..109 e-value: 3.7E-15 score: 56.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..183
None	No IPR available	PANTHER	PTHR33223	FAMILY NOT NAMED	coord: 10..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017571.1	Lag0017571.1	mRNA