Lag0017566 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017566
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA-directed RNA polymerase subunit beta'
Location	chr5: 5434639 .. 5436103 (-)
RNA-Seq Expression	Lag0017566
Synteny	Lag0017566

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTGGAGTACCGATGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATGTAATCGCAAAAATCATAAAAATGAAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTGAAATAGGTTTGATTGTCCATCTTTTTGATATAATAGTAAGGCATCCTCCGGATAATTCAAATCGAAGCAATTGGATGTCCGACTCGGACCTATATGACATGACCGAGCAATAGAAATACTCTAACACTCCACCTTTGTCATATATTCCATACATCACACTAGATAGATCCCACGAGTGAATAGAAAGTTGGATCTACATTGGATCTCACCTGAATCGCCCCATCTATCCTCCTGAGGAGAAGTTTGGTTTCAAACCCCGGTTCGAACAGGAGAAGTACGCCATGCTAATGTGCCTTGGATGATCCACATCTCAGGGTCAGGCGCTGATGAGCACATTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCAGGCACAACGACGCAATTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCGTCGTGCGGGCCTCCCGCTGGGGGCCCGCTATGCCAAAAGCGAGAGAAACCCCATCCCTCTCTTTCCTTTTTTCGCCCCCATGTCGCCACACGGGAGGGACATGGGGACGTAAAAAAGGGGATCCTATCAACTTGTTCCGACCTAGGATAATAAGCTCATGAGCTTAGTCTTACTTCACCGTCGAGAAACGAAAGAAGACTTCCATCTCCAAGTTTAACTCAGACGTAGCTCGCTTCTTTTTGGGTGTGAAGCAGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA

mRNA sequence

ATGCATTGGAGTACCGATGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA

Coding sequence (CDS)

ATGCATTGGAGTACCGATGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGTAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGAAAAGGAGGTGATCCAGCCGCACCTTCCAGTACGGCTACCTTGTTACGACTTCACTCCAGTCACTAGCCCTGCCTTCGGCATCCCCCTCCTTGCGGTTAAGGTAACGACTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGAATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGA

Protein sequence

MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN

Homology

[Close]

BLAST of Lag0017566 vs. NCBI nr
Match: KAG4154841.1 (hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum])

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-44
Identity = 98/105 (93.33%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 125 LYVLTSGNRRVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTT 184
           L V T   R VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTT
Sbjct: 601 LVVPTGWRRWVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTT 660

Query: 185 SGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 230
           SGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 661 SGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 705

[Close]

BLAST of Lag0017566 vs. NCBI nr
Match: KAG4211951.1 (hypothetical protein ERO13_A02G134101v2 [Gossypium hirsutum])

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-44
Identity = 98/105 (93.33%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 125 LYVLTSGNRRVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTT 184
           L V T   R VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTT
Sbjct: 622 LVVPTGWRRWVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTT 681

Query: 185 SGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 230
           SGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 682 SGMASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 726

[Close]

BLAST of Lag0017566 vs. NCBI nr
Match: KAD5960821.1 (hypothetical protein E3N88_12293 [Mikania micrantha])

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-43
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 128 LTSGNRRVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGM 187
           L  G   VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGM
Sbjct: 82  LLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGM 141

Query: 188 ASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 230
           ASSHSVTGGVYKARERIHRRMADR+LLAIPASCRRVAA NPN
Sbjct: 142 ASSHSVTGGVYKARERIHRRMADRQLLAIPASCRRVAACNPN 183

[Close]

BLAST of Lag0017566 vs. NCBI nr
Match: OWM63425.1 (hypothetical protein CDL15_Pgr022170 [Punica granatum] >OWM76771.1 hypothetical protein CDL15_Pgr004983 [Punica granatum])

HSP 1 Score: 186.0 bits (471), Expect = 3.5e-43
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 135 VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 194
           +SNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT
Sbjct: 1   MSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 60

Query: 195 GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 230
           GGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 61  GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 95

[Close]

BLAST of Lag0017566 vs. NCBI nr
Match: CAF1728903.1 (unnamed protein product [Brassica napus] >VDD65840.1 unnamed protein product [Brassica oleracea] >CAF1751061.1 unnamed protein product [Brassica napus] >CAF1831100.1 unnamed protein product [Brassica napus] >CDY19670.1 BnaC09g29260D [Brassica napus])

HSP 1 Score: 182.6 bits (462), Expect = 3.9e-42
Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 131 GNRRVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASS 190
           G   VSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMASS
Sbjct: 4   GFEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMASS 63

Query: 191 HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 230
           HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 64  HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of Lag0017566 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 166.0 bits (419), Expect = 5.0e-40
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 54  PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDP 113
           PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDP
Sbjct: 468 PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDP 527

Query: 114 ISVPTQDMLIGLYVLTSGNRR 135
           ISVPTQDMLIGLYVLTSGNRR
Sbjct: 528 ISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of Lag0017566 vs. ExPASy Swiss-Prot
Match: A6MM27 (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-39
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 54  PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDP 113
           PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDP
Sbjct: 468 PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDP 527

Query: 114 ISVPTQDMLIGLYVLTSGNRR 135
           ISVPTQDMLIGLYVLTSGNRR
Sbjct: 528 ISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of Lag0017566 vs. ExPASy Swiss-Prot
Match: Q2L8Z4 (DNA-directed RNA polymerase subunit beta' OS=Gossypium hirsutum OX=3635 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-39
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 54  PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDP 113
           PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDP
Sbjct: 468 PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDP 527

Query: 114 ISVPTQDMLIGLYVLTSGNRR 135
           ISVPTQDMLIGLYVLTSGNRR
Sbjct: 528 ISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of Lag0017566 vs. ExPASy Swiss-Prot
Match: B1NWE1 (DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta OX=3983 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-39
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 54  PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDP 113
           PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDP
Sbjct: 468 PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDP 527

Query: 114 ISVPTQDMLIGLYVLTSGNRR 135
           ISVPTQDMLIGLYVLTSGNRR
Sbjct: 528 ISVPTQDMLIGLYVLTSGNRR 548

[Close]

BLAST of Lag0017566 vs. ExPASy Swiss-Prot
Match: P11705 (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-39
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 54  PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDP 113
           PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDP
Sbjct: 468 PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDP 527

Query: 114 ISVPTQDMLIGLYVLTSGNRR 135
           ISVPTQDMLIGLY+LTSGNRR
Sbjct: 528 ISVPTQDMLIGLYILTSGNRR 548

[Close]

BLAST of Lag0017566 vs. ExPASy TrEMBL
Match: A0A5N6P537 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_12293 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 128 LTSGNRRVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGM 187
           L  G   VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGM
Sbjct: 82  LLFGCEAVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGM 141

Query: 188 ASSHSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 230
           ASSHSVTGGVYKARERIHRRMADR+LLAIPASCRRVAA NPN
Sbjct: 142 ASSHSVTGGVYKARERIHRRMADRQLLAIPASCRRVAACNPN 183

[Close]

BLAST of Lag0017566 vs. ExPASy TrEMBL
Match: A0A218VSE2 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004983 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-43
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 135 VSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 194
           +SNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT
Sbjct: 1   MSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVT 60

Query: 195 GGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 230
           GGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 61  GGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 95

[Close]

BLAST of Lag0017566 vs. ExPASy TrEMBL
Match: A0A078E1E5 (BnaC09g29260D protein OS=Brassica napus OX=3708 GN=BnaC09g29260D PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.9e-42
Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 131 GNRRVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASS 190
           G   VSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMASS
Sbjct: 4   GFEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMASS 63

Query: 191 HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 230
           HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 64  HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of Lag0017566 vs. ExPASy TrEMBL
Match: A0A6D2HHK8 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS412 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.9e-42
Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 131 GNRRVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASS 190
           G   VSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMASS
Sbjct: 4   GCEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMASS 63

Query: 191 HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 230
           HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 64  HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of Lag0017566 vs. ExPASy TrEMBL
Match: A0A3P6GJR6 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC47T61068H PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.9e-42
Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 131 GNRRVSNQNTQQALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTSGMASS 190
           G   VSN NTQ+ALALPEKEVIQPHLPVRLPCYDFTPVTSPAFG PLLAVKVTTSGMASS
Sbjct: 4   GFEAVSNLNTQEALALPEKEVIQPHLPVRLPCYDFTPVTSPAFGTPLLAVKVTTSGMASS 63

Query: 191 HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAAYNPN 230
           HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAA NPN
Sbjct: 64  HSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN 102

[Close]

BLAST of Lag0017566 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-39
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 54  PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDP 113
           PILVEGR ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDP
Sbjct: 468 PILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDP 527

Query: 114 ISVPTQDMLIGLYVLTSGNRR 135
           ISVPTQDMLIGLYVLTSG RR
Sbjct: 528 ISVPTQDMLIGLYVLTSGTRR 548

[Close]

BLAST of Lag0017566 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-25
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 1   MHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCGCSVVPFSLYKDQDQINVPIL---- 60
           MHWSTDV HAPEFTYSNVHLLPKTSHLWILSGGSCG S++ FS++KDQDQ+N+P L    
Sbjct: 450 MHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLIRFSIHKDQDQMNIPFLSAER 509

Query: 61  --VEGRAICLHPLVCKGFNADF-DGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAI 111
             +   ++    +  K F++DF D  ++ ++    L        L  SH NL+ SAI
Sbjct: 510 KSISSLSVNNDQVSQKFFSSDFADPKKLGIYDYSELNGN-----LGTSHYNLIYSAI 561

[Close]

BLAST of Lag0017566 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-08
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 60  RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQ 119
           R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQ
Sbjct: 484 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQ 543

Query: 120 DMLIGLYVLT 130
           D L   +++T
Sbjct: 544 DFLTSSFLIT 553

[Close]

BLAST of Lag0017566 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-08
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 60  RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQ 119
           R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQ
Sbjct: 494 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQ 553

Query: 120 DMLIGLYVLT 130
           D L   +++T
Sbjct: 554 DFLTSSFLIT 563

[Close]

BLAST of Lag0017566 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 50.1 bits (118), Expect = 2.8e-06
Identity = 27/92 (29.35%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 53  VPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGD 112
           V +L   + + LH   C  +NADFDGD+M VH P    ++AEA  ++ ++      + G+
Sbjct: 580 VRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGE 639

Query: 113 PISVPTQDMLIGLYVLTSGNRRVSNQNTQQAL 145
           P+    QD ++   +LT  +  +   +  Q L
Sbjct: 640 PLRALIQDHIVSSVLLTKRDTFLDKDHFNQLL 671

The following BLAST results are available for this feature:

BLAST of Lag0017566 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG4154841.1	1.1e-44	93.33	hypothetical protein ERO13_D03G074976v2 [Gossypium hirsutum]	[more]
KAG4211951.1	1.1e-44	93.33	hypothetical protein ERO13_A02G134101v2 [Gossypium hirsutum]	[more]
KAD5960821.1	2.1e-43	93.14	hypothetical protein E3N88_12293 [Mikania micrantha]	[more]
OWM63425.1	3.5e-43	97.89	hypothetical protein CDL15_Pgr022170 [Punica granatum] >OWM76771.1 hypothetical ...	[more]
CAF1728903.1	3.9e-42	92.93	unnamed protein product [Brassica napus] >VDD65840.1 unnamed protein product [Br...	[more]

BLAST of Lag0017566 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP2	5.0e-40	100.00	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
A6MM27	1.9e-39	98.77	DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC...	[more]
Q2L8Z4	1.9e-39	98.77	DNA-directed RNA polymerase subunit beta' OS=Gossypium hirsutum OX=3635 GN=rpoC1...	[more]
B1NWE1	1.9e-39	98.77	DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta OX=3983 GN=rpoC1 ...	[more]
P11705	2.5e-39	97.53	DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 ...	[more]

BLAST of Lag0017566 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6P537	1.0e-43	93.14	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_12293 PE=4 SV=1	[more]
A0A218VSE2	1.7e-43	97.89	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004983 PE=4 SV=1	[more]
A0A078E1E5	1.9e-42	92.93	BnaC09g29260D protein OS=Brassica napus OX=3708 GN=BnaC09g29260D PE=4 SV=1	[more]
A0A6D2HHK8	1.9e-42	92.93	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS412 PE...	[more]
A0A3P6GJR6	1.9e-42	92.93	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC47T61068H PE=4 SV=1	[more]

BLAST of Lag0017566 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	1.9e-39	96.30	DNA-directed RNA polymerase family protein	[more]
ATCG00170.1	1.2e-25	51.28	DNA-directed RNA polymerase family protein	[more]
AT5G60040.1	3.9e-08	40.00	nuclear RNA polymerase C1	[more]
AT5G60040.2	3.9e-08	40.00	nuclear RNA polymerase C1	[more]
AT3G57660.1	2.8e-06	29.35	nuclear RNA polymerase A1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 1..129 e-value: 9.2E-7 score: -67.8
None	No IPR available	GENE3D	2.40.40.20		coord: 10..108 e-value: 4.5E-20 score: 74.0
None	No IPR available	PANTHER	PTHR38146	FAMILY NOT NAMED	coord: 135..229
None	No IPR available	PANTHER	PTHR38146:SF11	BNAC09G29260D PROTEIN	coord: 135..229
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 53..161
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 56..99 e-value: 3.8E-14 score: 53.3
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 109..212 e-value: 2.1E-10 score: 42.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017566.1	Lag0017566.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding