Lag0017559 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017559
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	auxin-responsive protein SAUR36-like
Location	chr5: 5373489 .. 5373917 (+)
RNA-Seq Expression	Lag0017559
Synteny	Lag0017559

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATGAGAAGAACCAGAGGCTTCAAATTGAAAATCAAGCTTCTCAGAATCTTCAAATGGAGAACAACTTCCTCCAATCCCTTCTCCAACCTCCTCGCCCTCGCGACGGCGTCGTTCTCTCGCCGGCTTGGGTACGCCCGGTTGGACCGGACCCGGACCGGAACGGCGCCGGCGCCGAAGGGGTATTTGGCCGTGCACGTCGGCGGACCGGAGGGTCAAACGGAGAGGCATCTTGTGCCGGTGATTTACTTCAACCATCCGTCGTTCGGGAAGTTGCTGCAGGCGGCTGAGAGGATTTATGGGTTTGATCATCCGGGTCGGATCGTGATTCCGGTTGAGGTTTCCGAGTTTGAGGAGGTTAAGAATTTCATTGCTACGGCGGAGCATGGCCGGCGGCGGCGGCGGCGGCGGCGTTGGGGAAAGTAG

mRNA sequence

ATGATGATGAGAAGAACCAGAGGCTTCAAATTGAAAATCAAGCTTCTCAGAATCTTCAAATGGAGAACAACTTCCTCCAATCCCTTCTCCAACCTCCTCGCCCTCGCGACGGCGTCGTTCTCTCGCCGGCTTGGGTACGCCCGGTTGGACCGGACCCGGACCGGAACGGCGCCGGCGCCGAAGGGGTATTTGGCCGTGCACGTCGGCGGACCGGAGGGTCAAACGGAGAGGCATCTTGTGCCGGTGATTTACTTCAACCATCCGTCGTTCGGGAAGTTGCTGCAGGCGGCTGAGAGGATTTATGGGTTTGATCATCCGGGTCGGATCGTGATTCCGGTTGAGGTTTCCGAGTTTGAGGAGGTTAAGAATTTCATTGCTACGGCGGAGCATGGCCGGCGGCGGCGGCGGCGGCGGCGTTGGGGAAAGTAG

Coding sequence (CDS)

ATGATGATGAGAAGAACCAGAGGCTTCAAATTGAAAATCAAGCTTCTCAGAATCTTCAAATGGAGAACAACTTCCTCCAATCCCTTCTCCAACCTCCTCGCCCTCGCGACGGCGTCGTTCTCTCGCCGGCTTGGGTACGCCCGGTTGGACCGGACCCGGACCGGAACGGCGCCGGCGCCGAAGGGGTATTTGGCCGTGCACGTCGGCGGACCGGAGGGTCAAACGGAGAGGCATCTTGTGCCGGTGATTTACTTCAACCATCCGTCGTTCGGGAAGTTGCTGCAGGCGGCTGAGAGGATTTATGGGTTTGATCATCCGGGTCGGATCGTGATTCCGGTTGAGGTTTCCGAGTTTGAGGAGGTTAAGAATTTCATTGCTACGGCGGAGCATGGCCGGCGGCGGCGGCGGCGGCGGCGTTGGGGAAAGTAG

Protein sequence

MMMRRTRGFKLKIKLLRIFKWRTTSSNPFSNLLALATASFSRRLGYARLDRTRTGTAPAPKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERIYGFDHPGRIVIPVEVSEFEEVKNFIATAEHGRRRRRRRRWGK

Homology

[Close]

BLAST of Lag0017559 vs. NCBI nr
Match: XP_023540788.1 (auxin-responsive protein SAUR36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-50
Identity = 114/152 (75.00%), Postives = 119/152 (78.29%), Query Frame = 0


Query: 3   MRRTRGFKLKIKLLRIFKWRTT-------SSNPFSNLLALATASFSRRLGYARLDRTRTG 62
           MRRTRGFKLKIKLL IFK           SSNPFSNL +LATASFSRRLGY RL+R R+ 
Sbjct: 1   MRRTRGFKLKIKLLNIFKSTPNFNFNLPPSSNPFSNLFSLATASFSRRLGYGRLERRRSP 60

Query: 63  TAPAPKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERIYGFDHPGRIVIPVEV 122
             P PKGYLAVHVGGPE QTE HLVPVIYFNHP FGKLLQAAERIYGFD+PGRIVIPV V
Sbjct: 61  PPPPPKGYLAVHVGGPEDQTETHLVPVIYFNHPMFGKLLQAAERIYGFDYPGRIVIPVGV 120

Query: 123 SEFEEVKNFIATAEHGRRRR-----RRRRWGK 143
           SEFEEV+N IA AEH R RR     RRR WGK
Sbjct: 121 SEFEEVRNCIAAAEHSRSRRRTGGCRRRLWGK 152

[Close]

BLAST of Lag0017559 vs. NCBI nr
Match: KAG6596841.1 (Auxin-responsive protein SAUR36, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028368.1 Auxin-responsive protein SAUR36, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-50
Identity = 113/152 (74.34%), Postives = 120/152 (78.95%), Query Frame = 0


Query: 3   MRRTRGFKLKIKLLRIFKWRTT-------SSNPFSNLLALATASFSRRLGYARLDRTRTG 62
           MRRTRGFKLKIKLL+IFK           SSNPFSNL +LATASFSRRLGY RL+R R+ 
Sbjct: 1   MRRTRGFKLKIKLLKIFKSTPNFNFNLPPSSNPFSNLFSLATASFSRRLGYGRLERRRSP 60

Query: 63  TAPAPKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERIYGFDHPGRIVIPVEV 122
             P PKGYLAVHVGGPE QTE HLVPVIYFNHP FGKLLQAAERIYGFD+PGRIVIPV V
Sbjct: 61  PPPPPKGYLAVHVGGPEDQTETHLVPVIYFNHPMFGKLLQAAERIYGFDYPGRIVIPVGV 120

Query: 123 SEFEEVKNFIATAEHGRRRR-----RRRRWGK 143
           SEFEEV+N IA A+H R RR     RRR WGK
Sbjct: 121 SEFEEVRNCIAAADHSRSRRRSGGCRRRLWGK 152

[Close]

BLAST of Lag0017559 vs. NCBI nr
Match: XP_022946182.1 (auxin-responsive protein SAUR36-like [Cucurbita moschata])

HSP 1 Score: 207.6 bits (527), Expect = 7.0e-50
Identity = 112/152 (73.68%), Postives = 119/152 (78.29%), Query Frame = 0


Query: 3   MRRTRGFKLKIKLLRIFKWRTT-------SSNPFSNLLALATASFSRRLGYARLDRTRTG 62
           MRR RGFKLKIKLL+IFK           SSNPFSNL +LATASFSRRLGY RL+R R+ 
Sbjct: 1   MRRVRGFKLKIKLLKIFKSTPNFNFNLPPSSNPFSNLFSLATASFSRRLGYGRLERRRSP 60

Query: 63  TAPAPKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERIYGFDHPGRIVIPVEV 122
             P PKGYLAVHVGGPE QTE HLVPVIYFNHP FGKLLQAAERIYGFD+PGRIVIPV V
Sbjct: 61  PPPPPKGYLAVHVGGPEDQTETHLVPVIYFNHPMFGKLLQAAERIYGFDYPGRIVIPVGV 120

Query: 123 SEFEEVKNFIATAEHGRRRR-----RRRRWGK 143
           SEFEEV+N IA A+H R RR     RRR WGK
Sbjct: 121 SEFEEVRNCIAAADHSRSRRRTGGCRRRLWGK 152

[Close]

BLAST of Lag0017559 vs. NCBI nr
Match: TYK19488.1 (auxin-responsive protein SAUR32 [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 3.0e-48
Identity = 113/153 (73.86%), Postives = 123/153 (80.39%), Query Frame = 0


Query: 2   MMRRTRGFKLKIKLLRIFKWRT------TSSNPFSNLLALATASFSRRLGYARLDRTRTG 61
           M RRT+GFKLKIKLL+IFKWRT      T SNPFS L +LATA FSRR+GYARL+R R+ 
Sbjct: 1   MRRRTKGFKLKIKLLKIFKWRTHFFDLHTYSNPFSKLFSLATAPFSRRVGYARLNRVRST 60

Query: 62  TAPA-PKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERIYGFDHPGRIVIPVE 121
            A A PKGYLAVHVGGPE +TERHLVPVIYFNHP F KLLQAAE IYGFD+PGRIVIPV+
Sbjct: 61  PAVATPKGYLAVHVGGPEDETERHLVPVIYFNHPMFRKLLQAAEVIYGFDYPGRIVIPVD 120

Query: 122 VSEFEEVKNFIATAEHGRRRR-----RRRRWGK 143
           VSEFEEVKN IA AE+GR  R     RRRR GK
Sbjct: 121 VSEFEEVKNGIAAAENGRYCRRSGGYRRRRCGK 153

[Close]

BLAST of Lag0017559 vs. NCBI nr
Match: XP_008448892.1 (PREDICTED: auxin-responsive protein SAUR32 [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 3.0e-48
Identity = 113/153 (73.86%), Postives = 123/153 (80.39%), Query Frame = 0


Query: 2   MMRRTRGFKLKIKLLRIFKWRT------TSSNPFSNLLALATASFSRRLGYARLDRTRTG 61
           M RRT+GFKLKIKLL+IFKWRT      T SNPFS L +LATA FSRR+GYARL+R R+ 
Sbjct: 1   MRRRTKGFKLKIKLLKIFKWRTHFFNLHTYSNPFSKLFSLATAPFSRRVGYARLNRVRST 60

Query: 62  TAPA-PKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERIYGFDHPGRIVIPVE 121
            A A PKGYLAVHVGGPE +TERHLVPVIYFNHP F KLLQAAE IYGFD+PGRIVIPV+
Sbjct: 61  PAVATPKGYLAVHVGGPEDETERHLVPVIYFNHPMFRKLLQAAEVIYGFDYPGRIVIPVD 120

Query: 122 VSEFEEVKNFIATAEHGRRRR-----RRRRWGK 143
           VSEFEEVKN IA AE+GR  R     RRRR GK
Sbjct: 121 VSEFEEVKNGIAAAENGRYCRRSGGYRRRRCGK 153

[Close]

BLAST of Lag0017559 vs. ExPASy Swiss-Prot
Match: O22150 (Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-17
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 41  SRRLGYARLDRTRTGTAPAPKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERI 100
           +RR  Y  +D  +    P P+G+LA++VG  +G   R LVP++YFNHP FG+LL+ AE+ 
Sbjct: 63  TRRSAYIPVDHKKAD--PVPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLFGELLREAEKE 122

Query: 101 YGFDHPGRIVIPVEVSEFEEVKNFIATAEHGR 133
           YGF H G I IP   S+FE VK  IA+    R
Sbjct: 123 YGFCHEGGITIPCLYSDFERVKTRIASGSSSR 152

[Close]

BLAST of Lag0017559 vs. ExPASy Swiss-Prot
Match: Q9ZUZ3 (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-12
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 60  PKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERIYGFDHPGRIVIPVEVSEFE 119
           PKG LA+ VG    + +R +VPV+YFNHP F +LL+ AE  YGFD  G I IP  V EF 
Sbjct: 25  PKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVEEFR 84

Query: 120 EVKNFI 126
            V+  I
Sbjct: 85  YVQALI 90

[Close]

BLAST of Lag0017559 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-11
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 49  LDRTRTGTAPAPKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERIYGFDHP-G 108
           L R+ T  + APKG+LAV+VG  E Q +R+LVP+ Y N PSF  LL  +E  +GFDHP G
Sbjct: 14  LSRSTTAASAAPKGFLAVYVG--ESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMG 73

Query: 109 RIVIPVEVSEFEEV 122
            + IP     F  V
Sbjct: 74  GLTIPCPEDTFINV 85

[Close]

BLAST of Lag0017559 vs. ExPASy Swiss-Prot
Match: Q9FJF7 (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-10
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 49  LDRTRTGTAPAPKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERIYGFDHP-G 108
           L R+    + APKG+LAV+VG  E Q +R+LVP+ Y N PSF  LL  +E  +GFDHP G
Sbjct: 14  LSRSTAAVSAAPKGFLAVYVG--ESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMG 73

Query: 109 RIVIPVEVSEFEEV 122
            + IP     F  V
Sbjct: 74  GLTIPCHEDTFINV 85

[Close]

BLAST of Lag0017559 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-10
Identity = 36/74 (48.65%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 49  LDRTRTGTAPAPKGYLAVHVGGPEGQTERHLVPVIYFNHPSFGKLLQAAERIYGFDHP-G 108
           L R+    + APKG+LAV+VG  E Q +R+LVPV Y N PSF  LL  +E  +GFDHP G
Sbjct: 14  LSRSTGAGSAAPKGFLAVYVG--ESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMG 73

Query: 109 RIVIPVEVSEFEEV 122
            + IP     F  V
Sbjct: 74  GLTIPCPEDTFINV 85

The following BLAST results are available for this feature:

BLAST of Lag0017559 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540788.1	1.4e-50	75.00	auxin-responsive protein SAUR36-like [Cucurbita pepo subsp. pepo]	[more]
KAG6596841.1	1.9e-50	74.34	Auxin-responsive protein SAUR36, partial [Cucurbita argyrosperma subsp. sororia]...	[more]
XP_022946182.1	7.0e-50	73.68	auxin-responsive protein SAUR36-like [Cucurbita moschata]	[more]
TYK19488.1	3.0e-48	73.86	auxin-responsive protein SAUR32 [Cucumis melo var. makuwa]	[more]
XP_008448892.1	3.0e-48	73.86	PREDICTED: auxin-responsive protein SAUR32 [Cucumis melo]	[more]

BLAST of Lag0017559 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22150	3.7e-17	46.74	Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 S...	[more]
Q9ZUZ3	6.1e-12	51.52	Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S...	[more]
Q9FJG0	3.0e-11	48.65	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S...	[more]
Q9FJF7	2.5e-10	47.30	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 S...	[more]
Q9FK62	2.5e-10	48.65	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 51..123 e-value: 2.3E-16 score: 59.7
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 18..136
None	No IPR available	PANTHER	PTHR31374:SF210	AUXIN-RESPONSIVE PROTEIN-LIKE	coord: 18..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017559.1	Lag0017559.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin