Lag0017558 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017558
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Alkaline alpha galactosidase 3
Location	chr5: 5355649 .. 5356017 (+)
RNA-Seq Expression	Lag0017558
Synteny	Lag0017558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTACATGGGACGCCTTCTACCAGGAGGTTACTCAAGACGGCGTCGAAGCCGGACTGGATGGCAATCGGTCGGCGACGATCCACAGGAGGAGAACGAAGAAGAAGGCGGGAAGAAGTCGAAGCAGCCGCCATTACTAAGGCTGATGACGATTAGAGAGAACTCGAAGTTCCAGAACAATAGGATCCGACGGACGGACAGACCACGAGGACAGATCTGGGTTCCGACCACACCCACGCAGATCTGGGCTGGAAACCCACGCAGATCTGTTCAAGCTCGCCCCCAAGCTCGTCGAACCCACTCAGATCTGCCCTCAAGCTCGTCGAACCCCGATCTGCAGCGGCATTCCAGCTCGCCCTTAAGCTAA

mRNA sequence

ATGGTGTACATGGGACGCCTTCTACCAGGAGGTTACTCAAGACGGCGTCGAAGCCGGACTGGATGGCAATCGGTCGGCGACGATCCACAGGAGGAGAACGAAGAAGAAGGCGGGAAGAAGTCGAAGCAGCCGCCATTACTAAGGCTGATGACGATTAGAGAGAACTCGAAGTTCCAGAACAATAGGATCCGACGGACGGACAGACCACGAGGACAGATCTGGGTTCCGACCACACCCACGCAGATCTGGGCTGGAAACCCACGCAGATCTGTTCAAGCTCGCCCCCAAGCTCGTCGAACCCACTCAGATCTGCCCTCAAGCTCGTCGAACCCCGATCTGCAGCGGCATTCCAGCTCGCCCTTAAGCTAA

Coding sequence (CDS)

ATGGTGTACATGGGACGCCTTCTACCAGGAGGTTACTCAAGACGGCGTCGAAGCCGGACTGGATGGCAATCGGTCGGCGACGATCCACAGGAGGAGAACGAAGAAGAAGGCGGGAAGAAGTCGAAGCAGCCGCCATTACTAAGGCTGATGACGATTAGAGAGAACTCGAAGTTCCAGAACAATAGGATCCGACGGACGGACAGACCACGAGGACAGATCTGGGTTCCGACCACACCCACGCAGATCTGGGCTGGAAACCCACGCAGATCTGTTCAAGCTCGCCCCCAAGCTCGTCGAACCCACTCAGATCTGCCCTCAAGCTCGTCGAACCCCGATCTGCAGCGGCATTCCAGCTCGCCCTTAAGCTAA

Protein sequence

MVYMGRLLPGGYSRRRRSRTGWQSVGDDPQEENEEEGGKKSKQPPLLRLMTIRENSKFQNNRIRRTDRPRGQIWVPTTPTQIWAGNPRRSVQARPQARRTHSDLPSSSSNPDLQRHSSSPLS

Homology

[Close]

BLAST of Lag0017558 vs. NCBI nr
Match: KAG6587884.1 (putative galactinol--sucrose galactosyltransferase 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 21  GWQSVGDDPQEENEEEGGKKSKQPPLLRLMTIRENSKFQN 61
           GWQSVG DPQEENEEEG  K KQPPL RL  IRENSKFQN
Sbjct: 243 GWQSVGGDPQEENEEEGETKPKQPPLQRLTGIRENSKFQN 282

[Close]

BLAST of Lag0017558 vs. NCBI nr
Match: XP_022933539.1 (probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 21  GWQSVGDDPQEENEEEGGKKSKQPPLLRLMTIRENSKFQN 61
           GWQSVG DPQEENEEEG  K KQPPL RL  IRENSKFQN
Sbjct: 332 GWQSVGGDPQEENEEEGETKPKQPPLQRLTGIRENSKFQN 371

[Close]

BLAST of Lag0017558 vs. NCBI nr
Match: XP_023530382.1 (probable galactinol--sucrose galactosyltransferase 6 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 21  GWQSVGDDPQEENEEEGGKKSKQPPLLRLMTIRENSKFQN 61
           GWQSVG DPQEENEEEG  K KQPPL RL  IRENSKFQN
Sbjct: 243 GWQSVGGDPQEENEEEGETKPKQPPLQRLTGIRENSKFQN 282

[Close]

BLAST of Lag0017558 vs. NCBI nr
Match: KAG7021769.1 (putative galactinol--sucrose galactosyltransferase 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 21  GWQSVGDDPQEENEEEGGKKSKQPPLLRLMTIRENSKFQN 61
           GWQSVG DPQEENEEEG  K KQPPL RL  IRENSKFQN
Sbjct: 352 GWQSVGGDPQEENEEEGETKPKQPPLQRLTGIRENSKFQN 391

[Close]

BLAST of Lag0017558 vs. NCBI nr
Match: XP_022933540.1 (probable galactinol--sucrose galactosyltransferase 6 isoform X2 [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 21  GWQSVGDDPQEENEEEGGKKSKQPPLLRLMTIRENSKFQN 61
           GWQSVG DPQEENEEEG  K KQPPL RL  IRENSKFQN
Sbjct: 243 GWQSVGGDPQEENEEEGETKPKQPPLQRLTGIRENSKFQN 282

The following BLAST results are available for this feature:

BLAST of Lag0017558 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587884.1	1.7e-07	82.50	putative galactinol--sucrose galactosyltransferase 6, partial [Cucurbita argyros...	[more]
XP_022933539.1	1.7e-07	82.50	probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Cucurbita mosch...	[more]
XP_023530382.1	1.7e-07	82.50	probable galactinol--sucrose galactosyltransferase 6 isoform X2 [Cucurbita pepo ...	[more]
KAG7021769.1	1.7e-07	82.50	putative galactinol--sucrose galactosyltransferase 6, partial [Cucurbita argyros...	[more]
XP_022933540.1	1.7e-07	82.50	probable galactinol--sucrose galactosyltransferase 6 isoform X2 [Cucurbita mosch...	[more]

BLAST of Lag0017558 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017558.1	Lag0017558.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity