Lag0017556 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017556
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NAC domain-containing protein
Location	chr5: 5340290 .. 5341690 (-)
RNA-Seq Expression	Lag0017556
Synteny	Lag0017556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACAATTTCACATGTTCCTCCAGGCTTTAGATTTCATCCAACAGATGAAGAACTCATAGATTATTATTTGAGGAAAAAAGTTGCTTCAAAAAGGATTGATCTTGATGTCATCAAAGATGTTGATCTCTACAAAATTGAGCCATGGGATCTTCAAGGTAATGAAAAGAGAGTACATATGTTTCTATATTTTTTTCAAATTGAAAATGGAAGTTGAAGAAAACCCTTTTTTATTTCTTTCTTTATCAAGTATAGTTTTGATTTGATGGCATTTTGCAAATATAACTATTTAAGAAGAATAGAAAAAAGTAAAATTATTTTAAGCAAGCAAATGATACATATCCATGTGATTTATTGAATAAATAGCAAAATTAGAAACATTTTTCTTCTCTTTTGAGAATATTCCAACTTATAAAGACGTTTTGATCAAACGAATTGAGTTATGCTCAAATTGAAAAATTTCGCAAGGTTTGTTTAGTCCCCTTTTCTCTTTAGATTCACAATGAAGTATGAGAGTTCTTGAGATTAAATGAGACTATATTGTCGCAATGTTTGTTTAATTTAGTACTATTTTAGGCTTTTGAAGGAGAGTATAAACCCTAACAACACTTGTTCAACTTCACTTATTGTAGTTCAAGCTTGATATATATTGAAGAATAAAAAACTTGGTTCAGCAACATTTGAGGGTGATGGATTCAACTTCTGACCTCTTGGTCAAGGACACACGTACCAATTACCGCTGAACTATGTTCACTTTGACATTAAAGAAAAAACTTAGTTAAAACTAACGTATTCAAGTTAATCACGAGATTAAAAAAATGAATTATCCCCCCCAAAAAAACAGGTCTCTAATTAGATTTTATTTATTCAAGGCAAAGTGAAAAAAAGAAAGAGAATCACACACATATGAAGGGTTAAGACTGTCCCTTTTGTTAAAAGCTTTGAAATCAAACAAAAAATTTAAATCTCTCAATGTATATAGTCATAGAATAGAATACAATAGAATAATATTATGGTGTATTTTTACACAGAATTGTGCAGAATGGGAGGTGAAGATCAAGAAGATTGGTACTTTTTCAGCCACAAAGACAAGAAGTATCCAACAAGCACTCGAACTAATCGAGCTACAAAAGAAGGGTTTTGGAAGGCAACAGGAAGGGACAAAGCTATTTACTCTAGGCATGGACATGGTTTAATTGGAATGAGAAAAACCTTAGTCTTCTATCGTGGTCGAGCTCCGAACGGACAAAAATCCGATTGGATCATGCACGAATACCGACTCGAAACGACCGAAAATGGAGCTCCTCAGGCAAGTTTACAGTTATATATATTTAGCCCTATAATTGATCAGAGAGAGAAAGTTAAGATAAGGAAGTTAAGTGCGTATGTTTGGAAGTGA

mRNA sequence

ATGAATACAATTTCACATGTTCCTCCAGGCTTTAGATTTCATCCAACAGATGAAGAACTCATAGATTATTATTTGAGGAAAAAAGTTGCTTCAAAAAGGATTGATCTTGATGTCATCAAAGATGTTGATCTCTACAAAATTGAGCCATGGGATCTTCAAGAATTGTGCAGAATGGGAGGTGAAGATCAAGAAGATTGGTACTTTTTCAGCCACAAAGACAAGAAGTATCCAACAAGCACTCGAACTAATCGAGCTACAAAAGAAGGGTTTTGGAAGGCAACAGGAAGGGACAAAGCTATTTACTCTAGGCATGGACATGGTTTAATTGGAATGAGAAAAACCTTAGTCTTCTATCGTGGTCGAGCTCCGAACGGACAAAAATCCGATTGGATCATGCACGAATACCGACTCGAAACGACCGAAAATGGAGCTCCTCAGGCAAGTTTACAGTTATATATATTTAGCCCTATAATTGATCAGAGAGAGAAAGTTAAGATAAGGAAGTTAAGTGCGTATGTTTGGAAGTGA

Coding sequence (CDS)

ATGAATACAATTTCACATGTTCCTCCAGGCTTTAGATTTCATCCAACAGATGAAGAACTCATAGATTATTATTTGAGGAAAAAAGTTGCTTCAAAAAGGATTGATCTTGATGTCATCAAAGATGTTGATCTCTACAAAATTGAGCCATGGGATCTTCAAGAATTGTGCAGAATGGGAGGTGAAGATCAAGAAGATTGGTACTTTTTCAGCCACAAAGACAAGAAGTATCCAACAAGCACTCGAACTAATCGAGCTACAAAAGAAGGGTTTTGGAAGGCAACAGGAAGGGACAAAGCTATTTACTCTAGGCATGGACATGGTTTAATTGGAATGAGAAAAACCTTAGTCTTCTATCGTGGTCGAGCTCCGAACGGACAAAAATCCGATTGGATCATGCACGAATACCGACTCGAAACGACCGAAAATGGAGCTCCTCAGGCAAGTTTACAGTTATATATATTTAGCCCTATAATTGATCAGAGAGAGAAAGTTAAGATAAGGAAGTTAAGTGCGTATGTTTGGAAGTGA

Protein sequence

MNTISHVPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGGEDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRGRAPNGQKSDWIMHEYRLETTENGAPQASLQLYIFSPIIDQREKVKIRKLSAYVWK

Homology

[Close]

BLAST of Lag0017556 vs. NCBI nr
Match: XP_008448890.1 (PREDICTED: NAC domain-containing protein 26-like [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 1.4e-79
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MNTISHVPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGG 60
           MNTI HVPPGFRFHPTDEELIDYYLRKKV+SKRIDLDVIKDVDLYKIEPWDLQELCRMG 
Sbjct: 1   MNTIQHVPPGFRFHPTDEELIDYYLRKKVSSKRIDLDVIKDVDLYKIEPWDLQELCRMGS 60

Query: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120
           EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG
Sbjct: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120

Query: 121 RAPNGQKSDWIMHEYRLETTENGAPQ 147
           RAPNGQKSDWIMHEYRLETTENG  Q
Sbjct: 121 RAPNGQKSDWIMHEYRLETTENGPSQ 146

[Close]

BLAST of Lag0017556 vs. NCBI nr
Match: XP_023005500.1 (NAC domain-containing protein 26-like [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 1.4e-79
Identity = 139/146 (95.21%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MNTISHVPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGG 60
           MNTI HVPPGFRFHPTDEELIDYYLRKKV SKRID+DVIKD+DLYKIEPWDLQELCRMGG
Sbjct: 1   MNTILHVPPGFRFHPTDEELIDYYLRKKVGSKRIDIDVIKDIDLYKIEPWDLQELCRMGG 60

Query: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120
           +DQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSR+GHGLIGMRKTLVFYRG
Sbjct: 61  QDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRYGHGLIGMRKTLVFYRG 120

Query: 121 RAPNGQKSDWIMHEYRLETTENGAPQ 147
           RAPNGQKSDWIMHEYRLET+ENGAPQ
Sbjct: 121 RAPNGQKSDWIMHEYRLETSENGAPQ 146

[Close]

BLAST of Lag0017556 vs. NCBI nr
Match: KAE8650072.1 (hypothetical protein Csa_010254 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 1.8e-79
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MNTISHVPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGG 60
           MNTI HVPPGFRFHPTDEELIDYYLRKK++SK+IDLDVIKDVDLYKIEPWDLQELCRMG 
Sbjct: 1   MNTIPHVPPGFRFHPTDEELIDYYLRKKISSKKIDLDVIKDVDLYKIEPWDLQELCRMGN 60

Query: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120
           EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG
Sbjct: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120

Query: 121 RAPNGQKSDWIMHEYRLETTENGAPQA 148
           RAPNGQKSDWIMHEYRLETTENG  QA
Sbjct: 121 RAPNGQKSDWIMHEYRLETTENGPSQA 147

[Close]

BLAST of Lag0017556 vs. NCBI nr
Match: XP_022943959.1 (NAC domain-containing protein 26-like [Cucurbita moschata])

HSP 1 Score: 305.4 bits (781), Expect = 3.1e-79
Identity = 139/146 (95.21%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MNTISHVPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGG 60
           MNTI HVPPGFRFHPTDEELIDYYLRKKV SKRID+DVIKDVDLYKIEPWDLQ+LCRMGG
Sbjct: 1   MNTILHVPPGFRFHPTDEELIDYYLRKKVGSKRIDVDVIKDVDLYKIEPWDLQDLCRMGG 60

Query: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120
           +DQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSR+GHGLIGMRKTLVFYRG
Sbjct: 61  QDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRYGHGLIGMRKTLVFYRG 120

Query: 121 RAPNGQKSDWIMHEYRLETTENGAPQ 147
           RAPNGQKSDWIMHEYRLET+ENGAPQ
Sbjct: 121 RAPNGQKSDWIMHEYRLETSENGAPQ 146

[Close]

BLAST of Lag0017556 vs. NCBI nr
Match: XP_004147975.1 (NAC domain-containing protein 26 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 5.2e-79
Identity = 139/146 (95.21%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MNTISHVPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGG 60
           MNTI HVPPGFRFHPTDEELIDYYLRKK++SK+IDLDVIKDVDLYKIEPWDLQELCRMG 
Sbjct: 1   MNTIPHVPPGFRFHPTDEELIDYYLRKKISSKKIDLDVIKDVDLYKIEPWDLQELCRMGN 60

Query: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120
           EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG
Sbjct: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120

Query: 121 RAPNGQKSDWIMHEYRLETTENGAPQ 147
           RAPNGQKSDWIMHEYRLETTENG  Q
Sbjct: 121 RAPNGQKSDWIMHEYRLETTENGPSQ 146

[Close]

BLAST of Lag0017556 vs. ExPASy Swiss-Prot
Match: Q9FWX2 (NAC domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=NAC007 PE=1 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 3.4e-73
Identity = 125/146 (85.62%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1   MNTISHVPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGG 60
           MN+ SHVPPGFRFHPTDEEL+DYYLRKKVASKRI++D IKD+DLYKIEPWDLQELC++G 
Sbjct: 1   MNSFSHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGH 60

Query: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120
           E+Q DWYFFSHKDKKYPT TRTNRATK GFWKATGRDKAIY R  H LIGMRKTLVFY+G
Sbjct: 61  EEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLR--HSLIGMRKTLVFYKG 120

Query: 121 RAPNGQKSDWIMHEYRLETTENGAPQ 147
           RAPNGQKSDWIMHEYRLET ENG PQ
Sbjct: 121 RAPNGQKSDWIMHEYRLETDENGTPQ 144

[Close]

BLAST of Lag0017556 vs. ExPASy Swiss-Prot
Match: F4HYV5 (NAC domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=NAC026 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 6.4e-72
Identity = 126/172 (73.26%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MNTISHVPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGG 60
           MN+ S VPPGFRFHPTDEEL+DYYLRKKVASKRI++D+IKDVDLYKIEP DLQELC++G 
Sbjct: 1   MNSFSQVPPGFRFHPTDEELVDYYLRKKVASKRIEIDIIKDVDLYKIEPCDLQELCKIGN 60

Query: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120
           E+Q +WYFFSHKDKKYPT TRTNRATK GFWKATGRDKAIY R  H LIGMRKTLVFY+G
Sbjct: 61  EEQSEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYIR--HSLIGMRKTLVFYKG 120

Query: 121 RAPNGQKSDWIMHEYRLETTENGAPQASLQLYIFSPIIDQREKVKIRKLSAY 173
           RAPNGQKSDWIMHEYRLET+ENG PQ   + ++   +  ++    +RK+  Y
Sbjct: 121 RAPNGQKSDWIMHEYRLETSENGTPQE--EGWVVCRVFKKKLAATVRKMGDY 168

[Close]

BLAST of Lag0017556 vs. ExPASy Swiss-Prot
Match: Q9SL41 (NAC domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=NAC037 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.9e-64
Identity = 110/140 (78.57%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 7   VPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGGEDQEDW 66
           VPPGFRFHPTDEEL+ YYLRKK+AS++IDLDVI+D+DLY+IEPWDLQE CR+G E+Q +W
Sbjct: 9   VPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIRDIDLYRIEPWDLQEQCRIGYEEQNEW 68

Query: 67  YFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRGRAPNGQ 126
           YFFSHKDKKYPT TRTNRAT  GFWKATGRDKA+Y +    LIGMRKTLVFY+GRAPNG+
Sbjct: 69  YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDK--TKLIGMRKTLVFYKGRAPNGK 128

Query: 127 KSDWIMHEYRLETTENGAPQ 147
           KSDWIMHEYRLE+ EN  PQ
Sbjct: 129 KSDWIMHEYRLESDENAPPQ 146

[Close]

BLAST of Lag0017556 vs. ExPASy Swiss-Prot
Match: O65508 (NAC domain-containing protein 76 OS=Arabidopsis thaliana OX=3702 GN=NAC076 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.4e-64
Identity = 110/140 (78.57%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 7   VPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGGEDQEDW 66
           VPPGFRFHPTDEEL+ YYLRKKVAS++IDLDVI+D+DLY+IEPWDLQE CR+G E++ +W
Sbjct: 10  VPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQESCRIGYEERNEW 69

Query: 67  YFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRGRAPNGQ 126
           YFFSHKDKKYPT TRTNRAT  GFWKATGRDKA+Y +    LIGMRKTLVFY+GRAPNGQ
Sbjct: 70  YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDK--SKLIGMRKTLVFYKGRAPNGQ 129

Query: 127 KSDWIMHEYRLETTENGAPQ 147
           K+DWIMHEYRLE+ EN  PQ
Sbjct: 130 KTDWIMHEYRLESDENAPPQ 147

[Close]

BLAST of Lag0017556 vs. ExPASy Swiss-Prot
Match: Q9LVA1 (NAC domain-containing protein 101 OS=Arabidopsis thaliana OX=3702 GN=NAC101 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.4e-64
Identity = 109/145 (75.17%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 1   MNTISHVPPGFRFHPTDEELIDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCRMGG 60
           M +++H+PPG+RFHPTDEEL+DYYL+ KVA   + +DVIKDVDLYKIEPWD+QELC  G 
Sbjct: 1   MESLAHIPPGYRFHPTDEELVDYYLKNKVAFPGMQVDVIKDVDLYKIEPWDIQELCGRGT 60

Query: 61  EDQEDWYFFSHKDKKYPTSTRTNRATKEGFWKATGRDKAIYSRHGHGLIGMRKTLVFYRG 120
            ++ +WYFFSHKDKKYPT TRTNRAT  GFWKATGRDKAIYS+    L+GMRKTLVFY+G
Sbjct: 61  GEEREWYFFSHKDKKYPTGTRTNRATGSGFWKATGRDKAIYSK--QELVGMRKTLVFYKG 120

Query: 121 RAPNGQKSDWIMHEYRLETTENGAP 146
           RAPNGQKSDWIMHEYRLET ENG P
Sbjct: 121 RAPNGQKSDWIMHEYRLETDENGPP 143

The following BLAST results are available for this feature:

BLAST of Lag0017556 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448890.1	1.4e-79	96.58	PREDICTED: NAC domain-containing protein 26-like [Cucumis melo]	[more]
XP_023005500.1	1.4e-79	95.21	NAC domain-containing protein 26-like [Cucurbita maxima]	[more]
KAE8650072.1	1.8e-79	95.24	hypothetical protein Csa_010254 [Cucumis sativus]	[more]
XP_022943959.1	3.1e-79	95.21	NAC domain-containing protein 26-like [Cucurbita moschata]	[more]
XP_004147975.1	5.2e-79	95.21	NAC domain-containing protein 26 [Cucumis sativus]	[more]

BLAST of Lag0017556 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FWX2	3.4e-73	85.62	NAC domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=NAC007 PE=1 S...	[more]
F4HYV5	6.4e-72	73.26	NAC domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=NAC026 PE=1 ...	[more]
Q9SL41	4.9e-64	78.57	NAC domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=NAC037 PE=1 ...	[more]
O65508	6.4e-64	78.57	NAC domain-containing protein 76 OS=Arabidopsis thaliana OX=3702 GN=NAC076 PE=1 ...	[more]
Q9LVA1	6.4e-64	75.17	NAC domain-containing protein 101 OS=Arabidopsis thaliana OX=3702 GN=NAC101 PE=2...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 16..168 e-value: 1.8E-53 score: 182.5
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 5..144
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 8..137 e-value: 3.8E-38 score: 131.3
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 7..160 score: 55.263569
None	No IPR available	PANTHER	PTHR31989:SF383	NAC DOMAIN-CONTAINING PROTEIN 7-LIKE	coord: 4..145
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 4..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017556.1	Lag0017556.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding