Lag0017555 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017555
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NAC domain-containing protein
Location	chr5: 5338308 .. 5338733 (-)
RNA-Seq Expression	Lag0017555
Synteny	Lag0017555

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACAATCCAAAAGATGGGTGATTATGAATCACCTTATTGGCAGGATGATCAAATCTCCTTCATGCCAGACATTGATGATTCTCCAAAGCAAATCTCTCACCCTTTTGCCTCATCTTCCCACCCTCACCCTTGCAAGCATGAGATTGATCATCTTCACTTCGCCATTTTCGACGATCCCTTCCCTCAGCTCCCTCGACGCCCCGAGCTTACCTCAGACGATAATGTCTCGTCGTGCAGCTACGATCCCCGATCAAACACTCCCTCCTCGTCTCAAACATTCTTTCATGCCCTAGATAACCAACTGATGGATTGGCGAGCCATGGATCGATACGTCGCATCTCAGCTCAGCATCGACCGAGATGATCATCATGGAGGAAAAGATGCAAATTACTCCAAAGGCACCAAATATGCAAGTGAATGA

mRNA sequence

ATGACCACAATCCAAAAGATGGGTGATTATGAATCACCTTATTGGCAGGATGATCAAATCTCCTTCATGCCAGACATTGATGATTCTCCAAAGCAAATCTCTCACCCTTTTGCCTCATCTTCCCACCCTCACCCTTGCAAGCATGAGATTGATCATCTTCACTTCGCCATTTTCGACGATCCCTTCCCTCAGCTCCCTCGACGCCCCGAGCTTACCTCAGACGATAATGTCTCGTCGTGCAGCTACGATCCCCGATCAAACACTCCCTCCTCGTCTCAAACATTCTTTCATGCCCTAGATAACCAACTGATGGATTGGCGAGCCATGGATCGATACGTCGCATCTCAGCTCAGCATCGACCGAGATGATCATCATGGAGGAAAAGATGCAAATTACTCCAAAGGCACCAAATATGCAAGTGAATGA

Coding sequence (CDS)

ATGACCACAATCCAAAAGATGGGTGATTATGAATCACCTTATTGGCAGGATGATCAAATCTCCTTCATGCCAGACATTGATGATTCTCCAAAGCAAATCTCTCACCCTTTTGCCTCATCTTCCCACCCTCACCCTTGCAAGCATGAGATTGATCATCTTCACTTCGCCATTTTCGACGATCCCTTCCCTCAGCTCCCTCGACGCCCCGAGCTTACCTCAGACGATAATGTCTCGTCGTGCAGCTACGATCCCCGATCAAACACTCCCTCCTCGTCTCAAACATTCTTTCATGCCCTAGATAACCAACTGATGGATTGGCGAGCCATGGATCGATACGTCGCATCTCAGCTCAGCATCGACCGAGATGATCATCATGGAGGAAAAGATGCAAATTACTCCAAAGGCACCAAATATGCAAGTGAATGA

Protein sequence

MTTIQKMGDYESPYWQDDQISFMPDIDDSPKQISHPFASSSHPHPCKHEIDHLHFAIFDDPFPQLPRRPELTSDDNVSSCSYDPRSNTPSSSQTFFHALDNQLMDWRAMDRYVASQLSIDRDDHHGGKDANYSKGTKYASE

Homology

[Close]

BLAST of Lag0017555 vs. NCBI nr
Match: XP_022943959.1 (NAC domain-containing protein 26-like [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 2.6e-52
Identity = 109/141 (77.30%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDDQISFMPDIDDSPKQISHPFASSSHPHPCKHEIDHLHFAIFDD 60
           MTT QKMGDYESPYWQDDQISFMP I DSP QIS         HPCKHEIDHLHFA+FDD
Sbjct: 160 MTTAQKMGDYESPYWQDDQISFMPQI-DSPNQIS---------HPCKHEIDHLHFAVFDD 219

Query: 61  PFPQLPRRPELTSDDNVSSCSYDPRSNTPSSSQTFFHALDNQLMDWRAMDRYVASQLSID 120
            FPQLPR  EL SD  +SSCSYDPRSN PSSSQTFFH +DN+LMDW+AMDRYVASQLS D
Sbjct: 220 AFPQLPRHLELNSD--MSSCSYDPRSNAPSSSQTFFHGVDNKLMDWQAMDRYVASQLSTD 279

Query: 121 RDDHHGGKDANYSKGTKYASE 142
           RDDHHG  +ANYS  TKYASE
Sbjct: 280 RDDHHGRDEANYSHPTKYASE 288

[Close]

BLAST of Lag0017555 vs. NCBI nr
Match: KAG6596842.1 (Hsp70-Hsp90 organizing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215.7 bits (548), Expect = 2.6e-52
Identity = 109/141 (77.30%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 1    MTTIQKMGDYESPYWQDDQISFMPDIDDSPKQISHPFASSSHPHPCKHEIDHLHFAIFDD 60
            MTT QKMGDYESPYWQDDQISFMP I DSP QIS         HPCKHEIDHLHFA+FDD
Sbjct: 919  MTTAQKMGDYESPYWQDDQISFMPQI-DSPNQIS---------HPCKHEIDHLHFAVFDD 978

Query: 61   PFPQLPRRPELTSDDNVSSCSYDPRSNTPSSSQTFFHALDNQLMDWRAMDRYVASQLSID 120
             FPQLPR  EL SD  +SSCSYDPRSN PSSSQTFFH +DN+LMDW+AMDRYVASQLS D
Sbjct: 979  AFPQLPRHLELNSD--MSSCSYDPRSNAPSSSQTFFHGVDNKLMDWQAMDRYVASQLSTD 1038

Query: 121  RDDHHGGKDANYSKGTKYASE 142
            RDDHHG  +ANYS  TKYASE
Sbjct: 1039 RDDHHGRDEANYSHPTKYASE 1047

[Close]

BLAST of Lag0017555 vs. NCBI nr
Match: KAG7028371.1 (NAC domain-containing protein 26, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.8 bits (543), Expect = 9.8e-52
Identity = 108/141 (76.60%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDDQISFMPDIDDSPKQISHPFASSSHPHPCKHEIDHLHFAIFDD 60
           MTT QKMGDYESPYWQDDQISFMP I DSP QIS         HPCKHEIDHLHF +FDD
Sbjct: 186 MTTAQKMGDYESPYWQDDQISFMPQI-DSPNQIS---------HPCKHEIDHLHFPVFDD 245

Query: 61  PFPQLPRRPELTSDDNVSSCSYDPRSNTPSSSQTFFHALDNQLMDWRAMDRYVASQLSID 120
            FPQLPR  EL SD  +SSCSYDPRSN PSSSQTFFH +DN+LMDW+AMDRYVASQLS D
Sbjct: 246 AFPQLPRHLELNSD--MSSCSYDPRSNAPSSSQTFFHGVDNKLMDWQAMDRYVASQLSTD 305

Query: 121 RDDHHGGKDANYSKGTKYASE 142
           RDDHHG  +ANYS  TKYASE
Sbjct: 306 RDDHHGRDEANYSHPTKYASE 314

[Close]

BLAST of Lag0017555 vs. NCBI nr
Match: XP_023540293.1 (NAC domain-containing protein 26-like [Cucurbita pepo subsp. pepo] >AXF54201.1 NAC7 [Cucurbita pepo])

HSP 1 Score: 211.1 bits (536), Expect = 6.3e-51
Identity = 107/141 (75.89%), Postives = 113/141 (80.14%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDDQISFMPDIDDSPKQISHPFASSSHPHPCKHEIDHLHFAIFDD 60
           MTT QKMGDYESPYWQDDQISFMP I DSP QIS          PCKHEIDHLHF +FDD
Sbjct: 160 MTTAQKMGDYESPYWQDDQISFMPQI-DSPNQIS---------QPCKHEIDHLHFTVFDD 219

Query: 61  PFPQLPRRPELTSDDNVSSCSYDPRSNTPSSSQTFFHALDNQLMDWRAMDRYVASQLSID 120
            FPQLPR  EL SD  +SSCSYDPRSN PSSSQTFFH +DN+LMDW+AMDRYVASQLS D
Sbjct: 220 AFPQLPRHLELNSD--MSSCSYDPRSNAPSSSQTFFHGVDNKLMDWQAMDRYVASQLSTD 279

Query: 121 RDDHHGGKDANYSKGTKYASE 142
           RDDHHG  +ANYS  TKYASE
Sbjct: 280 RDDHHGRDEANYSHPTKYASE 288

[Close]

BLAST of Lag0017555 vs. NCBI nr
Match: XP_023005500.1 (NAC domain-containing protein 26-like [Cucurbita maxima])

HSP 1 Score: 200.7 bits (509), Expect = 8.5e-48
Identity = 105/141 (74.47%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDDQISFMPDIDDSPKQISHPFASSSHPHPCKHEIDHLHFAIFDD 60
           MTT QKMGDYESPYWQDDQISFMP I DSP QIS         HPCKHEIDHLHFA+FDD
Sbjct: 160 MTTAQKMGDYESPYWQDDQISFMPQI-DSPNQIS---------HPCKHEIDHLHFAVFDD 219

Query: 61  PFPQLPRRPELTSDDNVSSCSYDPRSNTPSSSQTFFHALDNQLMDWRAMDRYVASQLSID 120
            FPQLPR  EL SD  +SSCSYDPRSN PSSSQTFFH +DN+LMDW+AMDRYVASQLS D
Sbjct: 220 AFPQLPRHLELNSD--MSSCSYDPRSNAPSSSQTFFHGVDNKLMDWQAMDRYVASQLSTD 279

Query: 121 RDDHHGGKDANYSKGTKYASE 142
           RD      +ANYS  TKYASE
Sbjct: 280 RD------EANYSHPTKYASE 282

[Close]

BLAST of Lag0017555 vs. ExPASy Swiss-Prot
Match: F4HYV5 (NAC domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=NAC026 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.3e-05
Identity = 47/172 (27.33%), Postives = 69/172 (40.12%), Query Frame = 0


Query: 3   TIQKMGDYE---SPYWQDDQISFMPD--IDDSPKQISHPFASSSHPH------------- 62
           T++KMGDY    S +W DDQ+SFM    I  SP+Q       + H H             
Sbjct: 161 TVRKMGDYHSSPSQHWYDDQLSFMASEIISSSPRQFLPNHHYNRHHHQQTLPCGLNAFNN 220

Query: 63  -----PCKHEIDHLHF-----------AIFDDPFPQLPRRPELTSD-------------- 122
                 CK E++ LH+            + +  F QLP+    TS+              
Sbjct: 221 NNPNLQCKQELE-LHYNQMVQHQQQNHHLRESMFLQLPQLESPTSNCNSDNNNNTRNISN 280

The following BLAST results are available for this feature:

BLAST of Lag0017555 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943959.1	2.6e-52	77.30	NAC domain-containing protein 26-like [Cucurbita moschata]	[more]
KAG6596842.1	2.6e-52	77.30	Hsp70-Hsp90 organizing protein 1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7028371.1	9.8e-52	76.60	NAC domain-containing protein 26, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_023540293.1	6.3e-51	75.89	NAC domain-containing protein 26-like [Cucurbita pepo subsp. pepo] >AXF54201.1 N...	[more]
XP_023005500.1	8.5e-48	74.47	NAC domain-containing protein 26-like [Cucurbita maxima]	[more]

BLAST of Lag0017555 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HYV5	9.3e-05	27.33	NAC domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=NAC026 PE=1 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..141
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 1..124
None	No IPR available	PANTHER	PTHR31989:SF381	NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN-RELATED	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017555.1	Lag0017555.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding