Lag0017553 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017553
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein YABBY 4-like
Location	chr5: 5300588 .. 5301326 (-)
RNA-Seq Expression	Lag0017553
Synteny	Lag0017553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCTTCTTCCCTTCCTCCTTCTCCTTCTGATAAGCTCTGTTATGTCCATTGCGACATTTGCAACACCATCCTGGCGGTACGTTGTCATTTTTCGCCTTTAGGGTTTCTTGTTTTTTTGGTGTGGTTTTGAATTGAGTTTTTGTTTATTCCAGGTGAGTGTTCCTTCTGCTAGTTTGTTCAAAACGGTCACCGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTGAACATGCATGGTGGCATGCTTCTCTCTTCTACAAATCAATTTCACAGCTTTTCCAATGCTCACAATTCCATGGTACTTATATACACTAGACTCTGTTTCAATTTTATGTAAACTTTCAAAAAAATTGGTGAAAACTAGACCAACTTAACCTTTAGAAACAGAAAACCAAAAACAAAATTCGATTCGAACCAGACAAAGAAACGTCTTTGATTCCAAACAATTTTGAAGTTGATACACATAATCTCTATGTTTTTAGGCAACTAGTTTATATCCAAAAGTTTGATTTTGCTTGCTAACCCTAAAAGGATCAATGTTGTAGAACTCAATTTTTTTAGTTTTGGTTGTGGTTTTTTTCAGGAAGAGATCTCTAATCCAAATCCAAATCCAAATCCAAATCCAAATTTTCTGTTCAATCAAACAGATGGAATTGATTTGACCATGGCGACTCGAGTAGCCAACGATATTCCAAGGCAACCCCCAAGCATAAATAGACGTGAGATAATTTAA

mRNA sequence

ATGTCATCTTCTTCCCTTCCTCCTTCTCCTTCTGATAAGCTCTGTTATGTCCATTGCGACATTTGCAACACCATCCTGGCGGTGAGTGTTCCTTCTGCTAGTTTGTTCAAAACGGTCACCGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTGAACATGCATGGTGGCATGCTTCTCTCTTCTACAAATCAATTTCACAGCTTTTCCAATGCTCACAATTCCATGGAAGAGATCTCTAATCCAAATCCAAATCCAAATCCAAATCCAAATTTTCTGTTCAATCAAACAGATGGAATTGATTTGACCATGGCGACTCGAGTAGCCAACGATATTCCAAGGCAACCCCCAAGCATAAATAGACGTGAGATAATTTAA

Coding sequence (CDS)

ATGTCATCTTCTTCCCTTCCTCCTTCTCCTTCTGATAAGCTCTGTTATGTCCATTGCGACATTTGCAACACCATCCTGGCGGTGAGTGTTCCTTCTGCTAGTTTGTTCAAAACGGTCACCGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTGAACATGCATGGTGGCATGCTTCTCTCTTCTACAAATCAATTTCACAGCTTTTCCAATGCTCACAATTCCATGGAAGAGATCTCTAATCCAAATCCAAATCCAAATCCAAATCCAAATTTTCTGTTCAATCAAACAGATGGAATTGATTTGACCATGGCGACTCGAGTAGCCAACGATATTCCAAGGCAACCCCCAAGCATAAATAGACGTGAGATAATTTAA

Protein sequence

MSSSSLPPSPSDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLLPVNMHGGMLLSSTNQFHSFSNAHNSMEEISNPNPNPNPNPNFLFNQTDGIDLTMATRVANDIPRQPPSINRREII

Homology

[Close]

BLAST of Lag0017553 vs. NCBI nr
Match: TYK19491.1 (protein YABBY 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 3.6e-42
Identity = 96/139 (69.06%), Postives = 108/139 (77.70%), Query Frame = 0


Query: 1   MSSSSLP------PSPSDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLLPVNM 60
           MSSSSLP      P PSD+LCYVHC+IC+T+LAVSVPS SLFK VTVRCG+CANLLPV+M
Sbjct: 1   MSSSSLPTTFSQLPPPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPVSM 60

Query: 61  HGGMLLSSTNQFHSFS--------NAHNSMEEISNPNPNPNPNPNFLFNQTDGIDLTMAT 120
            GGMLL S +QFH F+        N HN +EEIS      NPNPNFL NQT+GIDLTMAT
Sbjct: 61  CGGMLLPSPSQFHGFTHSTTFFSPNTHNFLEEIS------NPNPNFLMNQTEGIDLTMAT 120

Query: 121 RVANDIPRQPPSINRREII 126
           RV ND+PRQPP+INRREII
Sbjct: 121 RVPNDVPRQPPTINRREII 133

[Close]

BLAST of Lag0017553 vs. NCBI nr
Match: XP_038876836.1 (protein YABBY 4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41
Identity = 95/137 (69.34%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   MSSSSL--------PPSPSDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLLPV 60
           MSSSS         PPSPSD++CYVHC+IC+TILAVSVPS SLFK VTVRCG+CANLLPV
Sbjct: 1   MSSSSFPTTFSQLPPPSPSDEICYVHCNICDTILAVSVPSTSLFKRVTVRCGYCANLLPV 60

Query: 61  NMHGGMLLSSTNQFHSFS--------NAHNSMEEISNPNPNPNPNPNFLFNQTDGIDLTM 120
           NM GGM L S+NQFH F+        N HN +EEIS      NPNPNFL NQT+GIDLTM
Sbjct: 61  NMCGGMFLPSSNQFHGFAHSTAFFSPNTHNFLEEIS------NPNPNFLMNQTEGIDLTM 120

Query: 121 ATRVANDIPRQPPSINR 122
           ATRVAND+PRQPPSINR
Sbjct: 121 ATRVANDVPRQPPSINR 131

[Close]

BLAST of Lag0017553 vs. NCBI nr
Match: XP_038876835.1 (protein YABBY 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41
Identity = 95/137 (69.34%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   MSSSSL--------PPSPSDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLLPV 60
           MSSSS         PPSPSD++CYVHC+IC+TILAVSVPS SLFK VTVRCG+CANLLPV
Sbjct: 1   MSSSSFPTTFSQLPPPSPSDEICYVHCNICDTILAVSVPSTSLFKRVTVRCGYCANLLPV 60

Query: 61  NMHGGMLLSSTNQFHSFS--------NAHNSMEEISNPNPNPNPNPNFLFNQTDGIDLTM 120
           NM GGM L S+NQFH F+        N HN +EEIS      NPNPNFL NQT+GIDLTM
Sbjct: 61  NMCGGMFLPSSNQFHGFAHSTAFFSPNTHNFLEEIS------NPNPNFLMNQTEGIDLTM 120

Query: 121 ATRVANDIPRQPPSINR 122
           ATRVAND+PRQPPSINR
Sbjct: 121 ATRVANDVPRQPPSINR 131

[Close]

BLAST of Lag0017553 vs. NCBI nr
Match: KAG7028372.1 (Protein YABBY 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 92/123 (74.80%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 7   PPSPSDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLLPVNMHGGMLLSSTNQF 66
           PP  SD LCYVHC++C+T+LAVSVP ASLFKTVTVRCGHCANLLPVNM GGMLL S N F
Sbjct: 15  PPPSSDHLCYVHCNVCDTVLAVSVPCASLFKTVTVRCGHCANLLPVNMRGGMLLPSPNHF 74

Query: 67  HS---FS-NAHNSMEEISNPNPNPNPNPNFLFNQTDGIDLTMATRVANDIPRQPPSINRR 126
           H    FS NAHN +EEIS      NPNPNF+ NQTDGIDL MATRV ND+PR PPSINRR
Sbjct: 75  HHTAFFSPNAHNFLEEIS------NPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRR 131

[Close]

BLAST of Lag0017553 vs. NCBI nr
Match: XP_004150647.1 (protein YABBY 4 isoform X2 [Cucumis sativus] >XP_031738726.1 protein YABBY 4 isoform X2 [Cucumis sativus] >KGN55900.1 hypothetical protein Csa_009483 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 9.0e-41
Identity = 89/126 (70.63%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 4   SSLPPSPSDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLLPVNMHGGMLLSST 63
           S LPP PSD+LCYVHC+IC+T+LAVSVPS SLFK VTVRCG+CANLLPVNM GGMLL S 
Sbjct: 11  SQLPPPPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPVNMCGGMLLPSP 70

Query: 64  NQFHSFS--------NAHNSMEEISNPNPNPNPNPNFLFNQTDGIDLTMATRVANDIPRQ 122
           +QFH F+        N HN +EEIS      NPNPNFL NQT+GIDLTMATRV ND+PRQ
Sbjct: 71  SQFHGFTHSTTFLSPNTHNFLEEIS------NPNPNFLMNQTEGIDLTMATRVPNDVPRQ 130

[Close]

BLAST of Lag0017553 vs. ExPASy Swiss-Prot
Match: Q9XFB1 (Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.4e-17
Identity = 54/107 (50.47%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 1   MSSSSLPPSP------SDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLL--PV 60
           MSSSS P  P      +D+LCYVHC  C+T+LAVSVP +SLFKTVTVRCGHC+NLL   V
Sbjct: 6   MSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTV 65

Query: 61  NMHGGMLLSSTNQFHSFSNAHNSMEEISNPNPNPNPNPNFLFNQTDG 100
           +M   +L S +N  HSF            P P P P PN L     G
Sbjct: 66  SMRALLLPSVSNLGHSFL-----------PPPPPPPPPNLLEEMRSG 101

[Close]

BLAST of Lag0017553 vs. ExPASy Swiss-Prot
Match: A2X7Q3 (Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-16
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 8   PSPSDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLLPVNMHGGML----LSST 67
           PSP+++LCYVHC+ C+TILAV VP +SLFKTVTVRCGHCANLL VN+ G +L     +  
Sbjct: 19  PSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPA 78

Query: 68  NQFH------SFSNAHNSMEEISNPNPN 86
           NQ H      S ++ H  ++E++   P+
Sbjct: 79  NQLHFGPSLLSPTSPHGLLDEVAFQTPS 106

[Close]

BLAST of Lag0017553 vs. ExPASy Swiss-Prot
Match: Q6H668 (Protein YABBY 4 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB4 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-16
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 8   PSPSDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLLPVNMHGGML----LSST 67
           PSP+++LCYVHC+ C+TILAV VP +SLFKTVTVRCGHCANLL VN+ G +L     +  
Sbjct: 19  PSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPA 78

Query: 68  NQFH------SFSNAHNSMEEISNPNPN 86
           NQ H      S ++ H  ++E++   P+
Sbjct: 79  NQLHFGPSLLSPTSPHGLLDEVAFQTPS 106

[Close]

BLAST of Lag0017553 vs. ExPASy Swiss-Prot
Match: O22152 (Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 53/119 (44.54%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 9   SPSDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLLPVNMHGGMLLSSTNQF-- 68
           SPSD LCYV C+ C TILAV+VP  SLFKTVTVRCG C NLL VNM    +L ++NQ   
Sbjct: 20  SPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMR-SYVLPASNQLQL 79

Query: 69  ----HSFSNAHNSMEEISNPNPNPNPNPNFLFNQTDGIDLTMATRVANDIPRQPPSINR 122
               HS+ N  + +EE+ +   N N          + I   M     ++IP+ PP +NR
Sbjct: 80  QLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPP-VNR 136

[Close]

BLAST of Lag0017553 vs. ExPASy Swiss-Prot
Match: Q01JG2 (Protein YABBY 5 OS=Oryza sativa subsp. indica OX=39946 GN=YAB5 PE=3 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-15
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 7  PPSPSDKLCYVHCDICNTILAVSVPSASLFKTVTVRCGHCANLLPVNMHGGML---LSST 66
          P +  ++LCYVHC+ C+TILAV VP +SLFKTVTVRCGHCANLL VN+ G +L    S+ 
Sbjct: 24 PLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTA 83

The following BLAST results are available for this feature:

BLAST of Lag0017553 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19491.1	3.6e-42	69.06	protein YABBY 4-like [Cucumis melo var. makuwa]	[more]
XP_038876836.1	1.1e-41	69.34	protein YABBY 4-like isoform X2 [Benincasa hispida]	[more]
XP_038876835.1	1.1e-41	69.34	protein YABBY 4-like isoform X1 [Benincasa hispida]	[more]
KAG7028372.1	1.4e-41	74.80	Protein YABBY 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004150647.1	9.0e-41	70.63	protein YABBY 4 isoform X2 [Cucumis sativus] >XP_031738726.1 protein YABBY 4 iso...	[more]

BLAST of Lag0017553 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XFB1	9.4e-17	50.47	Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1	[more]
A2X7Q3	2.7e-16	51.14	Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1	[more]
Q6H668	2.7e-16	51.14	Protein YABBY 4 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB4 PE=2 SV=1	[more]
O22152	1.4e-15	44.54	Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1	[more]
Q01JG2	6.7e-15	62.90	Protein YABBY 5 OS=Oryza sativa subsp. indica OX=39946 GN=YAB5 PE=3 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 10..79 e-value: 1.1E-25 score: 91.2
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 5..123
None	No IPR available	PANTHER	PTHR31675:SF36	PROTEIN YABBY 4-LIKE	coord: 5..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017553.1	Lag0017553.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0010154	fruit development
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:2000024	regulation of leaf development
biological_process	GO:1902183	regulation of shoot apical meristem development
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0005634	nucleus