Lag0017552 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017552
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr5: 5285463 .. 5286388 (-)
RNA-Seq ExpressionLag0017552
SyntenyLag0017552
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCCGCTCCGCGTCGCGATGACGTTGCGACAGGGGATACTCTGTCAAAAGCGGGTACAAGCTATATATGAAAATCAAAATAGATGGAATTTCCTCAAGTTCTTCCCCTATGAGCCAAGTGTGGAATAATTTGTGGAAACTAAACATTCGTTCTAAAATCAAACAATTTTTCTGGAAAGTCCTAAATGACTCTATTCAAAACAAAATGAATTTAAGTCATAGAGGAATCATTTCAGAAACGAATTGCCCTATGTGTAACTATCAACATGAAAGTACAAACCATATTCTTTTTTAGTGTAAGCGTGCTAAAGATTTATAGAAAATTACTTACAATAATGTTTTTTTGGAGGAGGACTTCAACGGAAGCTTCGTGGATAGATGGATCAGAATCAATTTGGAAGCAACCTTGGAGGAGCTCAGTTTGGTGGTTGTCACTTGCGGGACAATTTTGAATGATAGAAACAAAGTTACTCATAACGAAGATATTCCCCCAATTAACATATGGAGCCAGTGGATTAGAAAGTACCTCGAATCCTTTCTGTTAGCAAATGAGAAAAGATCCTCGATCCCTCTAGAAAATCAAAAGGAGAATCGCCCTGAATGTTGGTCCACTCCTCCGATGGGTGTCTGGAAGCTCAACACGGACGCAGCCTGTGCTTCATCAGATCAGTTAACGAGTTTAGGGCTGATATGTAGAGAGGAGAAGGGCGAAATGGTTTTCTCGTCGACGGTATATGTCGATCTTCGTATGAACCCCCTTCTAGCCGAAGTAACTACAATTTTCAAAGTAATAAAGAAGGCCCTGGTTTTGGGATGCTCGAAAAATTTAATTGTTGAATCTGACTGCTTGTCGACAATCAATTTTCTGTCAAAGAAGGCTGAAATTTGGAGCGAAATGGAAGCTTTGGAAAATTCTATCTAG

mRNA sequence

ATGTCGGCCGCTCCGCGTCGCGATGACGTTGCGACAGGGGATACTCTGTCAAAAGCGGCAACCTTGGAGGAGCTCAGTTTGGTGGTTGTCACTTGCGGGACAATTTTGAATGATAGAAACAAAGTTACTCATAACGAAGATATTCCCCCAATTAACATATGGAGCCAGTGGATTAGAAAGTACCTCGAATCCTTTCTGTTAGCAAATGAGAAAAGATCCTCGATCCCTCTAGAAAATCAAAAGGAGAATCGCCCTGAATGTTGGTCCACTCCTCCGATGGGTGTCTGGAAGCTCAACACGGACGCAGCCTGTGCTTCATCAGATCAGTTAACGAGTTTAGGGCTGATATGTAGAGAGGAGAAGGGCGAAATGGTTTTCTCGTCGACGGTATATGTCGATCTTCGTATGAACCCCCTTCTAGCCGAAGTAACTACAATTTTCAAAGTAATAAAGAAGGCCCTGGTTTTGGGATGCTCGAAAAATTTAATTGTTGAATCTGACTGCTTGTCGACAATCAATTTTCTGTCAAAGAAGGCTGAAATTTGGAGCGAAATGGAAGCTTTGGAAAATTCTATCTAG

Coding sequence (CDS)

ATGTCGGCCGCTCCGCGTCGCGATGACGTTGCGACAGGGGATACTCTGTCAAAAGCGGCAACCTTGGAGGAGCTCAGTTTGGTGGTTGTCACTTGCGGGACAATTTTGAATGATAGAAACAAAGTTACTCATAACGAAGATATTCCCCCAATTAACATATGGAGCCAGTGGATTAGAAAGTACCTCGAATCCTTTCTGTTAGCAAATGAGAAAAGATCCTCGATCCCTCTAGAAAATCAAAAGGAGAATCGCCCTGAATGTTGGTCCACTCCTCCGATGGGTGTCTGGAAGCTCAACACGGACGCAGCCTGTGCTTCATCAGATCAGTTAACGAGTTTAGGGCTGATATGTAGAGAGGAGAAGGGCGAAATGGTTTTCTCGTCGACGGTATATGTCGATCTTCGTATGAACCCCCTTCTAGCCGAAGTAACTACAATTTTCAAAGTAATAAAGAAGGCCCTGGTTTTGGGATGCTCGAAAAATTTAATTGTTGAATCTGACTGCTTGTCGACAATCAATTTTCTGTCAAAGAAGGCTGAAATTTGGAGCGAAATGGAAGCTTTGGAAAATTCTATCTAG

Protein sequence

MSAAPRRDDVATGDTLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKENRPECWSTPPMGVWKLNTDAACASSDQLTSLGLICREEKGEMVFSSTVYVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKKAEIWSEMEALENSI
Homology
BLAST of Lag0017552 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 7.4e-10
Identity = 46/154 (29.87%), Postives = 75/154 (48.70%), Query Frame = 0

Query: 23  EELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKE 82
           ++  L   T   I  DRN   H   +    +   WI  Y +++  A E +   P +    
Sbjct: 50  QQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQAQENKRISP-QQSSV 109

Query: 83  NRPEC-WSTPPMGVWKLNTDAACASSDQLTSLGLICREEKGEMVFSSTVYVDLRMNPLLA 142
             P C W  P     K+N+DAAC S+   T LGLI R+  G ++ + ++++ + +NPL A
Sbjct: 110 PPPSCRWLPPRDSAMKVNSDAACRSTS--TGLGLIIRDHFGVLLVAKSMFLPMPLNPLFA 169

Query: 143 EVTTIFKVIKKALVLGCSKNLIVESDCLSTINFL 176
           E+  I + +K A     ++ L+VESDC   I  +
Sbjct: 170 EIRGILEALKLAASRSYTR-LVVESDCQEAIRLV 199

BLAST of Lag0017552 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-09
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 0

Query: 15   TLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSS 74
            +L++    ++L+L  +T   I NDRN + H + + P+    +W+  +L+S   +  + S+
Sbjct: 1221 SLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSH--SQAQMSN 1280

Query: 75   IPLENQKENRP--ECWSTPPMGVWKLNTDAACASSDQLTSLGLICREEKGEMVFSSTVYV 134
                 Q  +RP  + W        KLNTDAAC  +   TS G I R+    +V ++++ V
Sbjct: 1281 YSPRTQSNHRPVVQYWRPSSSVSLKLNTDAACRGAS--TSFGCIIRDSSCSLVAATSIRV 1340

Query: 135  DLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFL 176
               ++PLLAE+  I + +K A     + +L VESD L  I  +
Sbjct: 1341 PFPLSPLLAEIRCILEGLKFAAASNFT-HLEVESDSLLAIQLI 1378

BLAST of Lag0017552 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 51/158 (32.28%), Postives = 82/158 (51.90%), Query Frame = 0

Query: 24  ELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLA--NEKRSSIPLENQK 83
           EL L  +TC  + NDR+ + + + IP   I  +WI KY E   +   N  +  IP  N+ 
Sbjct: 8   ELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAEEVRMKYHNGMKRRIPRVNE- 67

Query: 84  ENRPECWSTPPMGVWKLNTDAACASSDQLTSLGLICREEKGEMVFSSTVYVDLRMNPLLA 143
                 W  P  GV K+NTDAA   S++ + +G++ RE   E+V  + V   +   PLLA
Sbjct: 68  ------WRPPLGGVVKMNTDAAV--SEEGSGVGVLLREGNAEIV-GAMVDFHMVKTPLLA 127

Query: 144 EVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKKA 180
           ++  I + +  A  LG  + ++VE+D L  +N +  K+
Sbjct: 128 KILAIREGLSLATRLGVHR-VVVETDSLEALNLIGDKS 154

BLAST of Lag0017552 vs. NCBI nr
Match: XP_015388332.1 (uncharacterized protein LOC107178077 [Citrus sinensis])

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-08
Identity = 50/160 (31.25%), Postives = 76/160 (47.50%), Query Frame = 0

Query: 23  EELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRSSIPLENQKE 82
           +EL L+VV C TI   +N            +        ++SF    +  S I LE Q+ 
Sbjct: 14  KELELIVVLCWTIWYSQNLFIFENKREDSQLSIARAEANMDSFKRIKKPFSKI-LEKQQR 73

Query: 83  NRPECWSTPPMGVWKLNTDAACASSDQLTSLGLICREEKGEMVFSSTVYVDLRMNPLLAE 142
           NR + W+ PP G +K+N DAA    DQ+  LG+I R   GE+V ++      +++    E
Sbjct: 74  NRKQVWNPPPCGWFKINVDAAVNVKDQIAGLGVIIRNSNGEVVAAAVQQSCFQLSSTHME 133

Query: 143 VTTIFKVIKKALVLGCSKNLIVESDCLSTINF-LSKKAEI 182
              +   IK A   G S  +I+E+D    ++  LSKK  I
Sbjct: 134 AEAVILGIKSAQRAGFSP-MIIETDSQEVVDLTLSKKVSI 171

BLAST of Lag0017552 vs. NCBI nr
Match: XP_012852581.1 (PREDICTED: uncharacterized protein LOC105972189 [Erythranthe guttata])

HSP 1 Score: 68.9 bits (167), Expect = 5.3e-08
Identity = 49/168 (29.17%), Postives = 74/168 (44.05%), Query Frame = 0

Query: 14  DTLSKAATLEELSLVVVTCGTILNDRNKVTHNEDIPPINIWSQWIRKYLESFLLANEKRS 73
           D L +    ++L L +V C  +   RNK+ H ED   +     W   YL ++        
Sbjct: 28  DILKRELDPDKLHLAIVVCWKLWERRNKIIHQEDFINLEDMVGWCAAYLRTY-------D 87

Query: 74  SIPLENQKENRPE---CWSTPPMGVWKLNTDAACASSDQLTSLGLICREEKGEMVFSSTV 133
              L++    RPE    W+ PP+GV KLN DAA   + +   + LI R   G  V+    
Sbjct: 88  DAQLQHNNVRRPEFSQTWTPPPIGVLKLNVDAAFPPNSEFHRVSLIARNATGTCVWWQVR 147

Query: 134 YVDLRMNPLLAEVTTIFKVIKKALVLGCSKNLIVESDCLSTINFLSKK 179
            V   ++P   E   I + ++ A     +  + VESDCL  I  L K+
Sbjct: 148 RVLGMVSPSEGEAHAILQALRTAKFRQWNA-ITVESDCLLVIEALQKR 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022131661.17.4e-1029.87uncharacterized protein LOC111004786 [Momordica charantia][more]
XP_022158377.12.8e-0930.06uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_022158489.11.8e-0832.28uncharacterized protein LOC111024968 [Momordica charantia][more]
XP_015388332.13.1e-0831.25uncharacterized protein LOC107178077 [Citrus sinensis][more]
XP_012852581.15.3e-0829.17PREDICTED: uncharacterized protein LOC105972189 [Erythranthe guttata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 99..185
e-value: 9.0E-10
score: 38.4
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 75..188
NoneNo IPR availablePANTHERPTHR47074:SF37PROTEIN, PUTATIVE-RELATEDcoord: 75..188
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 98..183
e-value: 5.27045E-10
score: 53.0868
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 93..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017552.1Lag0017552.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity