Lag0017533 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017533
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 5060832 .. 5061686 (+)
RNA-Seq ExpressionLag0017533
SyntenyLag0017533
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTACCAATCCTTTATATCTAACTTGGTTCAACAATGATGGGTTGCTTACCTCTTGGCTGCTTGGCATCATTAATGAGGAAGTTTTGGGCATGATTGAAGGTTTGGATAATGCACATCAAGTATGAAAATCATTGGAGGAAACACTATTTGCAAACAACAAGGAAAATGAGATTCATCTCAGTGAATCTTAGAAATCAACCAAATATACATCAGGTCTTTTATACATGTAACAACCTGTAAAAATAAAAAAAAATAAAAAAAATAAAAAAAGAAATGGGGGAAGTGGGCAACTTGCCCGGTCAAAGAGGGAAAGGGGGGAAAATTTTCCCCCCAAATTTCGGTCAAACCGCCAGTTGAAAAAAAAAAAAAAAAAAATCTTTTTTCATCTCCCTCTCACGAATGCTCTCTCTCTCCCCGACTCTCTTTCTCTCCCTCTCAGCTAGCTCTCTCTCTCTCCTTCAGTTCTCTCTCTCTCGGTCCCCTCTCAGCCGCCGCAAGCCGACGCCGCCGCCGCCTCCACCGTCGCTCGCGAATCGCCGCCGCTGGTAACGTCTCTTTCTCTCTCTCTCTCGTCTCTTTCTCCCTCGATTTCTCTCTCTCTAACTCGTCTCTCCTTCGCAGCCTCTCTCTCCGTCTGCACCCGTCTCTCTCATCCGAGCGCCGCCGCCTGCGACCTCCGCGCCGCACGCCACCGTCTTCAACCTCTTTCTCTCTCTCTCTCGTCTCTTTCTCCCTCGATTTCTCTCTCTCTAACTCGTTATGGTTATAGGAGTGTTATTCTTATTTTCAGGTGCAAGGAAAAATTTTGGGTTCCCTCTGCGTACGTCGTTATGCTGCCGAATTTTCGGTAG

mRNA sequence

ATGCTTACCAATCCTTTATATCTAACTTGGTTCAACAATGATGGGTTGCTTACCTCTTGGCTGCTTGGCATCATTAATGAGGAAGTTTTGGGCATGATTGAAGGTTTGGATAATGCACATCAACCGCCGCAAGCCGACGCCGCCGCCGCCTCCACCGTCGCTCGCGAATCGCCGCCGCTGGTAACGTCTCTTTCTCTCTCTCTCTCGTCTCTTTCTCCCTCGATTTCTCTCTCTCTAACTCGTCTCTCCTTCGCAGCCTCTCTCTCCGTCTGCACCCGTCTCTCTCATCCGAGCGCCGCCGCCTGCGACCTCCGCGCCGCACGCCACCGTCTTCAACCTCTTTCTCTCTCTCTCTCGTCTCTTTCTCCCTCGATTTCTCTCTCTCTAACTCGTTATGGTTATAGGAGTGTTATTCTTATTTTCAGGTGCAAGGAAAAATTTTGGGTTCCCTCTGCGTACGTCGTTATGCTGCCGAATTTTCGGTAG

Coding sequence (CDS)

ATGCTTACCAATCCTTTATATCTAACTTGGTTCAACAATGATGGGTTGCTTACCTCTTGGCTGCTTGGCATCATTAATGAGGAAGTTTTGGGCATGATTGAAGGTTTGGATAATGCACATCAACCGCCGCAAGCCGACGCCGCCGCCGCCTCCACCGTCGCTCGCGAATCGCCGCCGCTGGTAACGTCTCTTTCTCTCTCTCTCTCGTCTCTTTCTCCCTCGATTTCTCTCTCTCTAACTCGTCTCTCCTTCGCAGCCTCTCTCTCCGTCTGCACCCGTCTCTCTCATCCGAGCGCCGCCGCCTGCGACCTCCGCGCCGCACGCCACCGTCTTCAACCTCTTTCTCTCTCTCTCTCGTCTCTTTCTCCCTCGATTTCTCTCTCTCTAACTCGTTATGGTTATAGGAGTGTTATTCTTATTTTCAGGTGCAAGGAAAAATTTTGGGTTCCCTCTGCGTACGTCGTTATGCTGCCGAATTTTCGGTAG

Protein sequence

MLTNPLYLTWFNNDGLLTSWLLGIINEEVLGMIEGLDNAHQPPQADAAAASTVARESPPLVTSLSLSLSSLSPSISLSLTRLSFAASLSVCTRLSHPSAAACDLRAARHRLQPLSLSLSSLSPSISLSLTRYGYRSVILIFRCKEKFWVPSAYVVMLPNFR
Homology
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BLAST of Lag0017533 vs. NCBI nr
Match: XP_020099653.1 (uncharacterized protein LOC109718063 [Ananas comosus])

HSP 1 Score: 54.7 bits (130), Expect = 8.6e-04
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 0 

Query: 4  NPLYLTWFNNDGLLTSWLLGIINEEVLGMIEGLDNAHQ 42
          NP Y  W NNDGLLTSWLLG + EEVLG++ G +N  +
Sbjct: 59 NPEYTIWINNDGLLTSWLLGTMAEEVLGLVIGCNNVRE 96

The following BLAST results are available for this feature:
BLAST of Lag0017533 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_020099653.18.6e-0460.53uncharacterized protein LOC109718063 [Ananas comosus][more]
BLAST of Lag0017533 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017533.1Lag0017533.1mRNA