Lag0017511 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017511
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Polyprotein
Location	chr5: 4593408 .. 4594484 (-)
RNA-Seq Expression	Lag0017511
Synteny	Lag0017511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTATGGAAGTCAATCTTGAGAGATCCTCGATGACTATCCCTAGGCGTCTAGATTGGGGTGATCTTACCTCAAATACTATCTGGACCATAGAGCATGGCACTGCTCCAAGGAACAGACAAAGCAATACAGCTCGTATCACCGAGTTTGATGACGGACATGTGAGATTCAATTTCAAGACGAACCAAAACATCCTCGTACTCAAGAAATCATGAGTGGAAGATCAAGTGTCTCAGAATTCCGCTCTAAAGAAAGACGACCACCCATATTTAGGTCCAGGTCCATGAGAATGTCAGTAGATTTTGATCAAAGAATCCCTGACGTTCAGTATGAAAAGTCTGAAGGTTCTCTTTCACCAACTCAGACTGATATGGAAAGAAAATCTGGTCATATTTACAACCAGATCAATGTCATCACCTTCAGGATGATGAAAAGATATATAATCAATCATACGACAGATATATTGATCGATATCTTCAAAGGCTAAACAGAAGAACGGGGAAAACCGACCCAAATTTCTGTCCAAAGAAGAATATATTGCCCTATTTAATCAAAGGCAATTTCTCTTGGAATCAAAGTCCTAAAAACCCCTAGCAAATGGGTCACAACCACTGGAAAAGAAGTTATTTCAGAATATCCTCCTGAAGAAGAATCTTCTTTTCCCCACCCTCAAATGCCATCGGCAACTATTATCTCTTCTCCTTATAAAACATTGATGAAGAGAAGACCAAAGCAGTTGGAGTTCGTGAAATAAAGAATATCCAACAACAACTCAACTATTCTAACAAGGTACTCACAACCTTGACTAAAACAGTTGAAATCTAAAACCTGTTAAGCACGACAGGCCTATTGCTCCTCCACAACGAGGAGGTCTACCTTGGATAGATCCCAATCGTCCTGTGGTCCAACCCAACAATCTTGGTGTTGCGATAAAAGGAATCGGCTCAAACGCTGAAGAACTTCTTGAAGAGCTAAACAAGAAGATATCTCAGCTCTCTCTGCCACAGATAAAATCGAGATGGCAGAATCTTCAAAAAGGAAGGAGCAAGTCTCCTTCGGAACACCGACCAACCTAG

mRNA sequence

ATGCTTATGGAAGTCAATCTTGAGAGATCCTCGATGACTATCCCTAGGCGTCTAGATTGGGGTGATCTTACCTCAAATACTATCTGGACCATAGAGCATGGCACTGCTCCAAGGAACAGACAAAGCAATACAGCTCGTATCACCGAGTTTGATGACGGACATCACGACAGGCCTATTGCTCCTCCACAACGAGGAGGTCTACCTTGGATAGATCCCAATCGTCCTGTGGTCCAACCCAACAATCTTGGTGTTGCGATAAAAGGAATCGGCTCAAACGCTGAAGAACTTCTTGAAGAGCTAAACAAGAAGATATCTCAGCTCTCTCTGCCACAGATAAAATCGAGATGGCAGAATCTTCAAAAAGGAAGGAGCAAGTCTCCTTCGGAACACCGACCAACCTAG

Coding sequence (CDS)

ATGCTTATGGAAGTCAATCTTGAGAGATCCTCGATGACTATCCCTAGGCGTCTAGATTGGGGTGATCTTACCTCAAATACTATCTGGACCATAGAGCATGGCACTGCTCCAAGGAACAGACAAAGCAATACAGCTCGTATCACCGAGTTTGATGACGGACATCACGACAGGCCTATTGCTCCTCCACAACGAGGAGGTCTACCTTGGATAGATCCCAATCGTCCTGTGGTCCAACCCAACAATCTTGGTGTTGCGATAAAAGGAATCGGCTCAAACGCTGAAGAACTTCTTGAAGAGCTAAACAAGAAGATATCTCAGCTCTCTCTGCCACAGATAAAATCGAGATGGCAGAATCTTCAAAAAGGAAGGAGCAAGTCTCCTTCGGAACACCGACCAACCTAG

Protein sequence

MLMEVNLERSSMTIPRRLDWGDLTSNTIWTIEHGTAPRNRQSNTARITEFDDGHHDRPIAPPQRGGLPWIDPNRPVVQPNNLGVAIKGIGSNAEELLEELNKKISQLSLPQIKSRWQNLQKGRSKSPSEHRPT

Homology

[Close]

BLAST of Lag0017511 vs. NCBI nr
Match: KAA0049723.1 (polyprotein [Cucumis melo var. makuwa] >TYK12152.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 67/170 (39.41%), Postives = 91/170 (53.53%), Query Frame = 0


Query: 1   MLMEVNLERSSMTIPRRLDWGDLTSNTIWTIEHGTAPRNRQSNTARITEFDDGH------ 60
           MLMEVNLERSSMT+P+ LDW  LT N +WTIEH T PR R+S+TA+ITE+DDGH      
Sbjct: 1   MLMEVNLERSSMTVPKLLDWSQLTRNPVWTIEHVTTPRTRKSSTAQITEYDDGHVEVQFQ 60

Query: 61  -------------------------HDRPI------------------------APPQRG 116
                                     +RPI                        AP +  
Sbjct: 61  EEPHHPPIREIYNGRSSVSEYQPTTRERPIPRSNSMRMSVDFEQFIPDVQKKTLAPLELP 120

[Close]

BLAST of Lag0017511 vs. NCBI nr
Match: KAA0039552.1 (Peptidase_A3 domain-containing protein [Cucumis melo var. makuwa] >TYK01747.1 Peptidase_A3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-17
Identity = 62/189 (32.80%), Postives = 85/189 (44.97%), Query Frame = 0


Query: 1   MLMEVNLERSSMTIPRRLDWGDLTSNTIWTIEHGTAPRNRQSNTARITEFDD-------- 60
           MLME+NLERSSM +P+ LDW +LT N +WTIEH TA + RQS+T +ITE+DD        
Sbjct: 1   MLMEINLERSSMMVPKLLDWSELTRNLVWTIEHSTALKIRQSSTTQITEYDDDMLKTTTG 60

Query: 61  ------------------------------------------------------------ 110
                                                                       
Sbjct: 61  KEILSEYPQEEEASFPHPKMPSVVIVSSPYKTIDEEKTKIVGVREIKNIQQQPNSSNKGL 120

[Close]

BLAST of Lag0017511 vs. NCBI nr
Match: KAA0050634.1 (hypothetical protein E6C27_scaffold673G001010 [Cucumis melo var. makuwa] >TYK07799.1 hypothetical protein E5676_scaffold1737G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-14
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1  MLMEVNLERSSMTIPRRLDWGDLTSNTIWTIEHGTAPRNRQSNTARITEFDDGH-----H 60
          MLMEVNLER SM +P+ LDW +LT N++W+IEH TAPR RQSNTA+I E+DDGH      
Sbjct: 1  MLMEVNLERFSMMVPKLLDWSELTRNSVWSIEHATAPRTRQSNTAQIIEYDDGHVEVQFQ 60

Query: 61 DRPIAPPQR 65
          + P  PP R
Sbjct: 61 EEPHQPPIR 69

[Close]

BLAST of Lag0017511 vs. NCBI nr
Match: KAA0050620.1 (hypothetical protein E6C27_scaffold673G00840 [Cucumis melo var. makuwa] >TYK07820.1 hypothetical protein E5676_scaffold1737G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MLMEVNLERSSMTIPRRLDWGDLTSNTIWTIEHGTAPRNRQSNTARITEFDDGH 55
          MLMEVNLERSSMTIP+ LDW +LT N+IW+IEH T  R RQS+ A+ITE+DDGH
Sbjct: 1  MLMEVNLERSSMTIPKLLDWSELTRNSIWSIEHATVFRTRQSSMAQITEYDDGH 54

[Close]

BLAST of Lag0017511 vs. NCBI nr
Match: KAA0033914.1 (polyprotein [Cucumis melo var. makuwa] >TYK01296.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 4.2e-12
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1   MLMEVNLERSSMTIPRRLDWGDLTSNTIWTIEHGTAPRNRQSNTARITEFDDGH 55
           MLM+VNLERSSM + + LDW +LT N IW+IEH T PR RQS+T +ITE+DDGH
Sbjct: 234 MLMKVNLERSSMMVLKLLDWSELTRNPIWSIEHATTPRTRQSSTTQITEYDDGH 287

The following BLAST results are available for this feature:

BLAST of Lag0017511 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049723.1	1.3e-21	39.41	polyprotein [Cucumis melo var. makuwa] >TYK12152.1 polyprotein [Cucumis melo var...	[more]
KAA0039552.1	1.9e-17	32.80	Peptidase_A3 domain-containing protein [Cucumis melo var. makuwa] >TYK01747.1 Pe...	[more]
KAA0050634.1	2.0e-14	60.87	hypothetical protein E6C27_scaffold673G001010 [Cucumis melo var. makuwa] >TYK077...	[more]
KAA0050620.1	2.9e-13	72.22	hypothetical protein E6C27_scaffold673G00840 [Cucumis melo var. makuwa] >TYK0782...	[more]
KAA0033914.1	4.2e-12	66.67	polyprotein [Cucumis melo var. makuwa] >TYK01296.1 polyprotein [Cucumis melo var...	[more]

BLAST of Lag0017511 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017511.1	Lag0017511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0016787	hydrolase activity