Lag0017474 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017474
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1
Locationchr5: 4116437 .. 4116841 (+)
RNA-Seq ExpressionLag0017474
SyntenyLag0017474
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACAGTCCTCCGTTCAAATTCTCCGGCCAAATCTCCATCTTCTCCGTTCCCTCTACCGTCTAAATCCACTGCACCTTCTGTTCGCCGATTCTCGGTCGCCAGGTACCTCTCTTTATCCCTTAATTTCTCCTTGTTTCTCTAAATTTTGTCTTTGCACTTGGTTCAGTTTGTTGTTGTTTTTCTGATTGGATTTACTGCTAGGTCTCCGTCGGAGCTGGGATGCGTTCAGTCCCTATTGCCTTTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAACTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAA

mRNA sequence

ATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACAGTCCTCCGTTCAAATTCTCCGGCCAAATCTCCATCTTCTCCGTTCCCTCTACCGTCTAAATCCACTGCACCTTCTGTTCGCCGATTCTCGGTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAGTCCCTATTGCCTTTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAACTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAA

Coding sequence (CDS)

ATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACAGTCCTCCGTTCAAATTCTCCGGCCAAATCTCCATCTTCTCCGTTCCCTCTACCGTCTAAATCCACTGCACCTTCTGTTCGCCGATTCTCGGTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAGTCCCTATTGCCTTTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAACTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAA

Protein sequence

MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Homology
BLAST of Lag0017474 vs. NCBI nr
Match: XP_004147213.1 (uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 8.6e-42
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0

Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MASACQRIASRISQSSFRT +R+NS AKS SSPFPLPSKSTAPSVRRFS+ARSPSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

BLAST of Lag0017474 vs. NCBI nr
Match: XP_008448835.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 7.2e-41
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MASACQRIASRISQSSFRT +R+NS AKS SS FPLPSKSTAPSVRRFS+ARSPSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

BLAST of Lag0017474 vs. NCBI nr
Match: XP_022154046.1 (uncharacterized protein LOC111021400 isoform X1 [Momordica charantia])

HSP 1 Score: 175.3 bits (443), Expect = 2.8e-40
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0

Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MASAC RIASRISQSSFR  +R+ SP KSPSSPFPLPSKSTAPSVRRFS+ARSPSELGCV
Sbjct: 1   MASACHRIASRISQSSFRAAVRTQSPVKSPSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQG LCCTSPGL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPGL 101

BLAST of Lag0017474 vs. NCBI nr
Match: XP_038903086.1 (protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MASACQRIASRISQSSFRT +R+N+ AKS SSPFPLP+KSTAPSVRRFS+ARSPSELGC+
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNTSAKSSSSPFPLPAKSTAPSVRRFSLARSPSELGCI 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQGILCCT PGL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTYPGL 101

BLAST of Lag0017474 vs. NCBI nr
Match: XP_023551885.1 (uncharacterized protein LOC111809723 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = 0

Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MASAC+RIASRISQSSFRTV+R+NSP K+ SSPF LP  STAPSVRRFS+A+SPSELGCV
Sbjct: 1   MASACRRIASRISQSSFRTVVRTNSPPKASSSPFTLPFNSTAPSVRRFSLAKSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQG LCCTSP L
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 101

BLAST of Lag0017474 vs. ExPASy Swiss-Prot
Match: Q6NNL9 (Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NOXY2 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 7.1e-07
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 0

Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MAS C R  S+ + S+FR+ +  N P+  P S         +P       +R   +LG +
Sbjct: 1   MASRC-RSLSKPAFSAFRSAM--NKPSIRPKSASSFIGVPPSP-----GFSRPIGQLGSL 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLP + AVA AR+ SCL  +S++ R+L+QG+LC  +PG+
Sbjct: 61  QSLLPLYSAVASARLTSCLGIDSQNSRSLAQGMLCSANPGV 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004147213.18.6e-4294.06uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus][more]
XP_008448835.17.2e-4193.07PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo... [more]
XP_022154046.12.8e-4090.10uncharacterized protein LOC111021400 isoform X1 [Momordica charantia][more]
XP_038903086.11.0e-3989.11protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X1 [Benincasa hispid... [more]
XP_023551885.11.7e-3786.14uncharacterized protein LOC111809723 isoform X1 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q6NNL97.1e-0738.61Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..42
NoneNo IPR availablePANTHERPTHR33156:SF9OS02G0658300 PROTEINcoord: 1..100
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017474.1Lag0017474.1mRNA