Lag0017474 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017474
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1
Location	chr5: 4116437 .. 4116841 (+)
RNA-Seq Expression	Lag0017474
Synteny	Lag0017474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACAGTCCTCCGTTCAAATTCTCCGGCCAAATCTCCATCTTCTCCGTTCCCTCTACCGTCTAAATCCACTGCACCTTCTGTTCGCCGATTCTCGGTCGCCAGGTACCTCTCTTTATCCCTTAATTTCTCCTTGTTTCTCTAAATTTTGTCTTTGCACTTGGTTCAGTTTGTTGTTGTTTTTCTGATTGGATTTACTGCTAGGTCTCCGTCGGAGCTGGGATGCGTTCAGTCCCTATTGCCTTTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAACTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAA

mRNA sequence

ATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACAGTCCTCCGTTCAAATTCTCCGGCCAAATCTCCATCTTCTCCGTTCCCTCTACCGTCTAAATCCACTGCACCTTCTGTTCGCCGATTCTCGGTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAGTCCCTATTGCCTTTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAACTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAA

Coding sequence (CDS)

ATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCCCAATCTTCCTTCAGAACAGTCCTCCGTTCAAATTCTCCGGCCAAATCTCCATCTTCTCCGTTCCCTCTACCGTCTAAATCCACTGCACCTTCTGTTCGCCGATTCTCGGTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAGTCCCTATTGCCTTTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAACTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAA

Protein sequence

MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL

Homology

[Close]

BLAST of Lag0017474 vs. NCBI nr
Match: XP_004147213.1 (uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 8.6e-42
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MASACQRIASRISQSSFRT +R+NS AKS SSPFPLPSKSTAPSVRRFS+ARSPSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

[Close]

BLAST of Lag0017474 vs. NCBI nr
Match: XP_008448835.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 7.2e-41
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MASACQRIASRISQSSFRT +R+NS AKS SS FPLPSKSTAPSVRRFS+ARSPSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

[Close]

BLAST of Lag0017474 vs. NCBI nr
Match: XP_022154046.1 (uncharacterized protein LOC111021400 isoform X1 [Momordica charantia])

HSP 1 Score: 175.3 bits (443), Expect = 2.8e-40
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MASAC RIASRISQSSFR  +R+ SP KSPSSPFPLPSKSTAPSVRRFS+ARSPSELGCV
Sbjct: 1   MASACHRIASRISQSSFRAAVRTQSPVKSPSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQG LCCTSPGL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPGL 101

[Close]

BLAST of Lag0017474 vs. NCBI nr
Match: XP_038903086.1 (protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MASACQRIASRISQSSFRT +R+N+ AKS SSPFPLP+KSTAPSVRRFS+ARSPSELGC+
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNTSAKSSSSPFPLPAKSTAPSVRRFSLARSPSELGCI 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQGILCCT PGL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGILCCTYPGL 101

[Close]

BLAST of Lag0017474 vs. NCBI nr
Match: XP_023551885.1 (uncharacterized protein LOC111809723 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MASAC+RIASRISQSSFRTV+R+NSP K+ SSPF LP  STAPSVRRFS+A+SPSELGCV
Sbjct: 1   MASACRRIASRISQSSFRTVVRTNSPPKASSSPFTLPFNSTAPSVRRFSLAKSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQG LCCTSP L
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 101

[Close]

BLAST of Lag0017474 vs. ExPASy Swiss-Prot
Match: Q6NNL9 (Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NOXY2 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 7.1e-07
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 1   MASACQRIASRISQSSFRTVLRSNSPAKSPSSPFPLPSKSTAPSVRRFSVARSPSELGCV 60
           MAS C R  S+ + S+FR+ +  N P+  P S         +P       +R   +LG +
Sbjct: 1   MASRC-RSLSKPAFSAFRSAM--NKPSIRPKSASSFIGVPPSP-----GFSRPIGQLGSL 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 102
           QSLLP + AVA AR+ SCL  +S++ R+L+QG+LC  +PG+
Sbjct: 61  QSLLPLYSAVASARLTSCLGIDSQNSRSLAQGMLCSANPGV 93

The following BLAST results are available for this feature:

BLAST of Lag0017474 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147213.1	8.6e-42	94.06	uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus]	[more]
XP_008448835.1	7.2e-41	93.07	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]
XP_022154046.1	2.8e-40	90.10	uncharacterized protein LOC111021400 isoform X1 [Momordica charantia]	[more]
XP_038903086.1	1.0e-39	89.11	protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X1 [Benincasa hispid...	[more]
XP_023551885.1	1.7e-37	86.14	uncharacterized protein LOC111809723 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0017474 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNL9	7.1e-07	38.61	Protein NONRESPONDING TO OXYLIPINS 2, mitochondrial OS=Arabidopsis thaliana OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..42
None	No IPR available	PANTHER	PTHR33156:SF9	OS02G0658300 PROTEIN	coord: 1..100
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017474.1	Lag0017474.1	mRNA