Lag0017467 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017467
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr5: 4028103 .. 4028771 (+)
RNA-Seq Expression	Lag0017467
Synteny	Lag0017467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGCATGTGGAATTTCAGAAACAAGGCCGCAACAGAAAACAAATCTCCAGCTTTTAATCACATCAGAATCCCGATCGAGGAAAGTATTCATGAATGGCATATCTCTTACCTTAAGAGGAGCAGCCCGAAGCCCGCGAGGAGCCAATCGAGTCACGCAACGTGGATCAAATCGAAGTCTAACTTCTGGAAATTGAATGCAGACGCTACCTGGTTTAACAATTTGGGCAGAGGTGGAGTTGGCTGGGTCGTGCGTGACTCGTCTGGATCCTTGATCACCTTCGGTATGAGAAGAGTTATCAGAAAGTGGGACATGAAAAGTTTAGAAGTGAAAGCTATTAGGGAGGGGCTGAGACCGATTGTCGATACCTGCACTCAAAAGAAGATGTCCCTCGAAATTGAATCGGACTCTCTGGTCGTGATTCAAGCATTGAAGAGGGAAGGTGACGATTTATCGGAGATGAAGGTTATAGCAGACGAAATTTGCTCCCTTGTCGCTCGCCTCCAGGCCGTTAATTTCTCTCATTGCTTCAGAGAAGCCAATTCAGTCGCTCACTGGGTTGCAAGGGAGGCAACATCTTTTGATTTTTGTTGTAATCAGGAGACATCCTTGTCTAAGGAAAAAGGGCAATCTTTTTGGGTCCCTGATGTTCCTTCTTTTATTTGA

mRNA sequence

ATGTGGAGCATGTGGAATTTCAGAAACAAGGCCGCAACAGAAAACAAATCTCCAGCTTTTAATCACATCAGAATCCCGATCGAGGAAAGTATTCATGAATGGCATATCTCTTACCTTAAGAGGAGCAGCCCGAAGCCCGCGAGGAGCCAATCGAGTCACGCAACGTGGATCAAATCGAAGTCTAACTTCTGGAAATTGAATGCAGACGCTACCTGGTTTAACAATTTGGGCAGAGGTGGAGTTGGCTGGGTCGTGCGTGACTCGTCTGGATCCTTGATCACCTTCGGTATGAGAAGAGTTATCAGAAAGTGGGACATGAAAAGTTTAGAAGTGAAAGCTATTAGGGAGGGGCTGAGACCGATTGTCGATACCTGCACTCAAAAGAAGATGTCCCTCGAAATTGAATCGGACTCTCTGGTCGTGATTCAAGCATTGAAGAGGGAAGGTGACGATTTATCGGAGATGAAGGTTATAGCAGACGAAATTTGCTCCCTTGTCGCTCGCCTCCAGGCCGTTAATTTCTCTCATTGCTTCAGAGAAGCCAATTCAGTCGCTCACTGGGTTGCAAGGGAGGCAACATCTTTTGATTTTTGTTGTAATCAGGAGACATCCTTGTCTAAGGAAAAAGGGCAATCTTTTTGGGTCCCTGATGTTCCTTCTTTTATTTGA

Coding sequence (CDS)

ATGTGGAGCATGTGGAATTTCAGAAACAAGGCCGCAACAGAAAACAAATCTCCAGCTTTTAATCACATCAGAATCCCGATCGAGGAAAGTATTCATGAATGGCATATCTCTTACCTTAAGAGGAGCAGCCCGAAGCCCGCGAGGAGCCAATCGAGTCACGCAACGTGGATCAAATCGAAGTCTAACTTCTGGAAATTGAATGCAGACGCTACCTGGTTTAACAATTTGGGCAGAGGTGGAGTTGGCTGGGTCGTGCGTGACTCGTCTGGATCCTTGATCACCTTCGGTATGAGAAGAGTTATCAGAAAGTGGGACATGAAAAGTTTAGAAGTGAAAGCTATTAGGGAGGGGCTGAGACCGATTGTCGATACCTGCACTCAAAAGAAGATGTCCCTCGAAATTGAATCGGACTCTCTGGTCGTGATTCAAGCATTGAAGAGGGAAGGTGACGATTTATCGGAGATGAAGGTTATAGCAGACGAAATTTGCTCCCTTGTCGCTCGCCTCCAGGCCGTTAATTTCTCTCATTGCTTCAGAGAAGCCAATTCAGTCGCTCACTGGGTTGCAAGGGAGGCAACATCTTTTGATTTTTGTTGTAATCAGGAGACATCCTTGTCTAAGGAAAAAGGGCAATCTTTTTGGGTCCCTGATGTTCCTTCTTTTATTTGA

Protein sequence

MWSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARSQSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSLEVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFREANSVAHWVAREATSFDFCCNQETSLSKEKGQSFWVPDVPSFI

Homology

[Close]

BLAST of Lag0017467 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-17
Identity = 66/207 (31.88%), Postives = 102/207 (49.28%), Query Frame = 0


Query: 2   WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------ 61
           W +W  RNK+  +   P    I++ I+  I    I+   R++    +S            
Sbjct: 17  WQIWEMRNKSIFKGVHPETRDIQLAIDRYI----INSAGRNTNLKGKSTNKDLHLIRRIE 76

Query: 62  QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSL 121
            ++ A W    SN WKLN +A W  +   GG+GW++RD  G +I    R +  + ++  L
Sbjct: 77  DNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYL 136

Query: 122 EVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARL 181
           EV AI EGLR I     +    + +ESDSL  I  L R+  D +E+  + +EI  ++  +
Sbjct: 137 EVMAICEGLRAIRQ---EHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDM 196

Query: 182 QAVNFSHCFREANSVAHWVAREATSFD 197
           + V+  H  REAN VAH +AR A   D
Sbjct: 197 EIVSMRHISREANKVAHGLARRAMEND 216

[Close]

BLAST of Lag0017467 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 3.6e-16
Identity = 67/212 (31.60%), Postives = 102/212 (48.11%), Query Frame = 0


Query: 2   WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------ 61
           W +W  RNK+  +        I++ I+  I    I+   R +    +S            
Sbjct: 17  WQIWEMRNKSIFKGVHSETRDIQLVIDRYI----INSAGRDTNLKGKSANKDLHLIRRIG 76

Query: 62  QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSL 121
            ++ A W    SN WKLN DA W  +   GG+GW++RD  G +I    R +  + ++  L
Sbjct: 77  DNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYL 136

Query: 122 EVKAIREGLRPI-VDTCTQKKMS----LEIESDSLVVIQALKREGDDLSEMKVIADEICS 181
           EV AI EGLR I  + C   +      + +ESDSL  I  L R+  D +E+  + +EI  
Sbjct: 137 EVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQ 196

Query: 182 LVARLQAVNFSHCFREANSVAHWVAREATSFD 197
           ++  ++ V+  H  REAN VAH +AR A   D
Sbjct: 197 MMEDMKIVSMRHISREANKVAHDLARRAMEND 224

[Close]

BLAST of Lag0017467 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-14
Identity = 58/193 (30.05%), Postives = 99/193 (51.30%), Query Frame = 0


Query: 2   WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPA-RSQSSHATWIKSK 61
           W +WN RN      +  +F+ +   + + + E   SY   +S     ++ ++   W    
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTE--SSYQSETSLSMLHKTLNNKLKWEPPP 77

Query: 62  SNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSLEVKAIREGLRP 121
            + W LNADA+W ++  RGG+GW++R   G ++  G R V    ++K LE  AI EGLR 
Sbjct: 78  MHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRN 137

Query: 122 IVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFRE 181
           + +    +   L IE+DS  V   L R+ +DL++   + +EI +L    + + F+   RE
Sbjct: 138 LTNLGVLR--PLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRE 197

Query: 182 ANSVAHWVAREAT 194
            N  AH +A+ A+
Sbjct: 198 TNGCAHSLAQRAS 206

[Close]

BLAST of Lag0017467 vs. NCBI nr
Match: CAB4273082.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-13
Identity = 65/197 (32.99%), Postives = 94/197 (47.72%), Query Frame = 0


Query: 1    MWSMWNFRNKAATENKSPAFNHIRIP-IEESIHEW-----HISYLKRSSPKPARSQSSHA 60
            +W +W  RN A  E  +    H+ +    + +HE+     H   L    P+P   Q+   
Sbjct: 1086 LWRIWKIRNGAVFEG-TVIEPHVAVECFLDQVHEFRTAQMHGKPLINELPRPPEVQAETV 1145

Query: 61   T-WIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSLEVKA 120
            T W K      K+N DA W +    GGVGWVVRDS G ++  G +  +R     ++E +A
Sbjct: 1146 TSWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEA 1205

Query: 121  IREGLRPIVDTCTQKKMS-LEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAV 180
            IRE L      C Q  +S LE+ESDSL VI+ +  E +    +  I  +I  LV + Q  
Sbjct: 1206 IREAL----VACVQSGLSKLEVESDSLQVIRMIGGEWNMDIAVDTIVFDIKQLVGQFQHC 1265

Query: 181  NFSHCFREANSVAHWVA 190
             F +  R  N  AH +A
Sbjct: 1266 VFLYTPRNCNKAAHKIA 1277

[Close]

BLAST of Lag0017467 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-13
Identity = 57/197 (28.93%), Postives = 92/197 (46.70%), Query Frame = 0


Query: 1   MWSMWNFRNKAATEN-KSPAFNHIRIPIEESIHEWHISYLKRSSPKPARSQSSHATWIKS 60
           +WS+W +RN+      + P    IR   E  I+E+  + L  +     ++      W   
Sbjct: 23  LWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEF-TTNLGGNLNMEDKNLPRTVGWTPP 82

Query: 61  KSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSLEVKAIREGLR 120
             + WKLN DATW ++L  GG+GW+VRDS G  I                    + E L+
Sbjct: 83  AQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFI--------------------MAECLK 142

Query: 121 PIVDTCT-QKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCF 180
            +  + T +  + +E+ESD L V+  + +    L+E+ +I ++I   +  L    F H  
Sbjct: 143 ALSQSLTLEAGIKIEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIEGFKHLP 198

Query: 181 REANSVAHWVAREATSF 196
            +AN VAH +AR A  F
Sbjct: 203 MKANGVAHGIARRACVF 198

[Close]

BLAST of Lag0017467 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.0e-18
Identity = 66/207 (31.88%), Postives = 102/207 (49.28%), Query Frame = 0


Query: 2   WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------ 61
           W +W  RNK+  +   P    I++ I+  I    I+   R++    +S            
Sbjct: 17  WQIWEMRNKSIFKGVHPETRDIQLAIDRYI----INSAGRNTNLKGKSTNKDLHLIRRIE 76

Query: 62  QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSL 121
            ++ A W    SN WKLN +A W  +   GG+GW++RD  G +I    R +  + ++  L
Sbjct: 77  DNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYL 136

Query: 122 EVKAIREGLRPIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARL 181
           EV AI EGLR I     +    + +ESDSL  I  L R+  D +E+  + +EI  ++  +
Sbjct: 137 EVMAICEGLRAIRQ---EHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDM 196

Query: 182 QAVNFSHCFREANSVAHWVAREATSFD 197
           + V+  H  REAN VAH +AR A   D
Sbjct: 197 EIVSMRHISREANKVAHGLARRAMEND 216

[Close]

BLAST of Lag0017467 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-16
Identity = 67/212 (31.60%), Postives = 102/212 (48.11%), Query Frame = 0


Query: 2   WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPARS------------ 61
           W +W  RNK+  +        I++ I+  I    I+   R +    +S            
Sbjct: 17  WQIWEMRNKSIFKGVHSETRDIQLVIDRYI----INSAGRDTNLKGKSANKDLHLIRRIG 76

Query: 62  QSSHATWIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSL 121
            ++ A W    SN WKLN DA W  +   GG+GW++RD  G +I    R +  + ++  L
Sbjct: 77  DNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYL 136

Query: 122 EVKAIREGLRPI-VDTCTQKKMS----LEIESDSLVVIQALKREGDDLSEMKVIADEICS 181
           EV AI EGLR I  + C   +      + +ESDSL  I  L R+  D +E+  + +EI  
Sbjct: 137 EVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQ 196

Query: 182 LVARLQAVNFSHCFREANSVAHWVAREATSFD 197
           ++  ++ V+  H  REAN VAH +AR A   D
Sbjct: 197 MMEDMKIVSMRHISREANKVAHDLARRAMEND 224

[Close]

BLAST of Lag0017467 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-14
Identity = 58/193 (30.05%), Postives = 99/193 (51.30%), Query Frame = 0


Query: 2   WSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHISYLKRSSPKPA-RSQSSHATWIKSK 61
           W +WN RN      +  +F+ +   + + + E   SY   +S     ++ ++   W    
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTE--SSYQSETSLSMLHKTLNNKLKWEPPP 77

Query: 62  SNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSLEVKAIREGLRP 121
            + W LNADA+W ++  RGG+GW++R   G ++  G R V    ++K LE  AI EGLR 
Sbjct: 78  MHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRN 137

Query: 122 IVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFRE 181
           + +    +   L IE+DS  V   L R+ +DL++   + +EI +L    + + F+   RE
Sbjct: 138 LTNLGVLR--PLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRE 197

Query: 182 ANSVAHWVAREAT 194
            N  AH +A+ A+
Sbjct: 198 TNGCAHSLAQRAS 206

[Close]

BLAST of Lag0017467 vs. ExPASy TrEMBL
Match: A0A6J5UAY2 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20161 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-13
Identity = 65/197 (32.99%), Postives = 94/197 (47.72%), Query Frame = 0


Query: 1    MWSMWNFRNKAATENKSPAFNHIRIP-IEESIHEW-----HISYLKRSSPKPARSQSSHA 60
            +W +W  RN A  E  +    H+ +    + +HE+     H   L    P+P   Q+   
Sbjct: 1086 LWRIWKIRNGAVFEG-TVIEPHVAVECFLDQVHEFRTAQMHGKPLINELPRPPEVQAETV 1145

Query: 61   T-WIKSKSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSLEVKA 120
            T W K      K+N DA W +    GGVGWVVRDS G ++  G +  +R     ++E +A
Sbjct: 1146 TSWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEA 1205

Query: 121  IREGLRPIVDTCTQKKMS-LEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAV 180
            IRE L      C Q  +S LE+ESDSL VI+ +  E +    +  I  +I  LV + Q  
Sbjct: 1206 IREAL----VACVQSGLSKLEVESDSLQVIRMIGGEWNMDIAVDTIVFDIKQLVGQFQHC 1265

Query: 181  NFSHCFREANSVAHWVA 190
             F +  R  N  AH +A
Sbjct: 1266 VFLYTPRNCNKAAHKIA 1277

[Close]

BLAST of Lag0017467 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-13
Identity = 57/197 (28.93%), Postives = 92/197 (46.70%), Query Frame = 0


Query: 1   MWSMWNFRNKAATEN-KSPAFNHIRIPIEESIHEWHISYLKRSSPKPARSQSSHATWIKS 60
           +WS+W +RN+      + P    IR   E  I+E+  + L  +     ++      W   
Sbjct: 23  LWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEF-TTNLGGNLNMEDKNLPRTVGWTPP 82

Query: 61  KSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSLEVKAIREGLR 120
             + WKLN DATW ++L  GG+GW+VRDS G  I                    + E L+
Sbjct: 83  AQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFI--------------------MAECLK 142

Query: 121 PIVDTCT-QKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCF 180
            +  + T +  + +E+ESD L V+  + +    L+E+ +I ++I   +  L    F H  
Sbjct: 143 ALSQSLTLEAGIKIEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIEGFKHLP 198

Query: 181 REANSVAHWVAREATSF 196
            +AN VAH +AR A  F
Sbjct: 203 MKANGVAHGIARRACVF 198

[Close]

BLAST of Lag0017467 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-13
Identity = 52/196 (26.53%), Postives = 92/196 (46.94%), Query Frame = 0


Query: 1   MWSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHI-SYLKRSSPKPARSQSSHATWIKS 60
           +W +W  RN+     +      +    E+ + EW I +  +    KP  ++SS   W   
Sbjct: 364 LWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPP 423

Query: 61  KSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSLEVKAIREGLR 120
              + K N DATW  +  R G+GWV+R+  G +   G R + +   +   E++A+R    
Sbjct: 424 PHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWA-- 483

Query: 121 PIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFR 180
            ++     +   +  ESDS V+I+ L  + +    +K    ++  L+++   V F    R
Sbjct: 484 -VLSLSRFQYNYVIFESDSQVLIEILNND-EIWPSLKPTIQDLQRLLSQFTEVKFVFIPR 543

Query: 181 EANSVAHWVAREATSF 196
           E N++A  VARE+ SF
Sbjct: 544 EGNTLAERVARESLSF 555

[Close]

BLAST of Lag0017467 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10
Identity = 49/196 (25.00%), Postives = 86/196 (43.88%), Query Frame = 0


Query: 1   MWSMWNFRNKAATENKSPAFNHIRIPIEESIHEWHI-SYLKRSSPKPARSQSSHATWIKS 60
           +W +W  RN+   + K      +     E   EW     L+  +  P   ++    W   
Sbjct: 81  LWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAP 140

Query: 61  KSNFWKLNADATWFNNLGRGGVGWVVRDSSGSLITFGMRRVIRKWDMKSLEVKAIREGLR 120
              + K N DATW     R G+GW++R+ SG ++  G R + R  ++   E++A+R  + 
Sbjct: 141 PYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAVL 200

Query: 121 PIVDTCTQKKMSLEIESDSLVVIQALKREGDDLSEMKVIADEICSLVARLQAVNFSHCFR 180
             +     K++  E ++ +LV    L    D    ++   ++I  L+   + V F    R
Sbjct: 201 -TMSRFNYKRIIFESDAQALV---NLLNSDDFWPTLQPALEDIQQLLHHFEEVKFEFTPR 260

Query: 181 EANSVAHWVAREATSF 196
             N VA  +ARE+ SF
Sbjct: 261 GGNKVADRIARESISF 272

The following BLAST results are available for this feature:

BLAST of Lag0017467 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143535.1	1.5e-17	31.88	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	3.6e-16	31.60	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022155262.1	5.7e-14	30.05	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
CAB4273082.1	4.8e-13	32.99	unnamed protein product [Prunus armeniaca]	[more]
XP_022148549.1	4.8e-13	28.93	uncharacterized protein LOC111017181 [Momordica charantia]	[more]

BLAST of Lag0017467 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017467 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP26	7.0e-18	31.88	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	1.7e-16	31.60	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DNV9	2.8e-14	30.05	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J5UAY2	2.3e-13	32.99	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J1D4B6	2.3e-13	28.93	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Lag0017467 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	3.9e-13	26.53	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	1.1e-10	25.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 64..196 e-value: 7.8E-15 score: 57.0
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 67..192 e-value: 1.0E-21 score: 77.0
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 40..195
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 66..190 e-value: 1.12929E-19 score: 79.2804
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 63..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017467.1	Lag0017467.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity