Lag0017426 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017426
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	chr5: 3567937 .. 3569669 (+)
RNA-Seq Expression	Lag0017426
Synteny	Lag0017426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCACTACATCCAAATTTGAATACTAAGGGCCATATTGGACAGACCCCGAAGGCACCAACAATAATTCCCTTGGGAGCGGGCTTGAAAGGAAAATGCAAGGATGTTGTTCTAAATGGATTTGTGAATAGCAGAGAAATAGTTCTTATAATCAAAAAGAATAATATGTGCATTAGACCAATTTCTGGAAATTCGATGAAGAAAGGTTGTACAGCCAAGAAGAGACGCAATAGAGAGGTCACCAATCTCCTTGGAACATGGGAAAAAGAGGCCAATGAAGACAGTTAATTTAGCTAAGCTCTGAGATACCCGGTGGTGAAGAAAGAGTCAAAGAGATATCTTTATGAAGATAATATCCTGGAATGTTAGAGGGATCGGAGCTCGTTCTAAGAGGGCTCTTATTAATTTAATAGTCTTGCAAGAGACAAGGCTCGACCATGTTGATAAAAGGGCGGTCAAGTCAATGTGGAGTTCTAGGCATGTGGGCTAGCTAGCTTTTAATGCAGCCAATTCAACCGGGGGGAATCCTCCTCGTGTGGAAAGAAAATGTCATAGAGGTAGTAGACACTGTGTTGGGTTCTTTTTCCATTTCGATAGAATGTATCTTCCATGGACATAGAGGGTTGGGTGACATTTTTTGCAGGAATTATATGATTTGTCTAGGTTGTGTAAGGGAGCTTGTTCGTGTTTGGTGACTTCAATGTTGTGAGGTGGATGGATGAGAGGCTTAACACTAATAGAATATCTAGATGTATGAAAAAGTTTAACTAGTTTATTTCCTCTACAGACTTGTTAGATCCTCCCATGGCCAACAGTAGATTCTCTCGAACTAGAATGGGGGAGAGAGTGACTACCTCAAGGATTGATAGAGTCCTAATATCTAGGCAATGGGCTGAAAACTTCAAAGAACACAGGTTGTATAGGTTGCATCGACCCACCTCTAACCATTTCCCCAAAGCTCTTTCTTTAGGAGCTTTGAACTGGGGTCCTACGCCTTTTAGATTTGAATACATGTGGATGGACAACTCGCATTTTAAGAGAAACATGTTAAAATGGTGGAATGATCAGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAAGGGTGGGCTGGTTTTAGATTCATAGAAAAATCGAAGGGGCTGAAAAAGCATATTAGAGTCTGGAATAAAGACGTGTTTAGAAATGTGGTTGATAAGAAAAAGGTTATCCTTTACTAAATAGAGCACCTAGATGTGTTGTAAGAGAAAAGTGCCATTCATCCTTTGCAACTTGAAGAGAGATCGAAGCTAAAAAGCTCTATCTTAGATTTAACAATAAAAGAACACAGAAGCCTAAATCAAGACAAGATTACATGGTTGAATGAAGGAGATGAGAATACTTCGTTTTTTCATATATGGGCTTCGAATATGAAAAACATAGCTTTTTCTCTATACTTGAAAGTGAGGATGGAGACTTTTATCTATAGAAGCAGAGATAGAGGAAGAGATTGTTGACTTCTATAGGATGCTCTATGATAGTGACAATGGTCCTCGGTTTACTTTTGACAGAATTGATTGGGTCCCTATTGACTCTCAAGAAAGTGCAAATTTGGAGAAGCCTTTTAGCAAGGAGGAGATAATCAAAGCGATTCAAGGCCTTAGCAATCTCAGATGA

mRNA sequence

ATGATTCCACTACATCCAAATTTGAATACTAAGGGCCATATTGGACAGACCCCGAAGGCACCAACAATAATTCCCTTGGGAGCGGGCTTGAAAGGAAAATGCAAGGATGTTGTTCTAAATGGATTTGTGAATAGCAGAGAAATAGTTCTTATAATCAAAAAGAATAATATGTGCATTAGACCAATTTCTGGAAATTCGATGAAGAAAGGTTGTACAGCCAAGAAGAGACGCAATAGAGAGGTCACCAATCTCCTTGGAACATGGGAAAAAGAGGCCAATGAAGACAACTTGTTAGATCCTCCCATGGCCAACAGTAGATTCTCTCGAACTAGAATGGGGGAGAGAGTGACTACCTCAAGGATTGATAGAGTCCTAATATCTAGGCAATGGGCTGAAAACTTCAAAGAACACAGGTTGTATAGGTTGCATCGACCCACCTCTAACCATTTCCCCAAAGCTCTTTCTTTAGGAGCTTTGAACTGGGAAGCAGAGATAGAGGAAGAGATTGTTGACTTCTATAGGATGCTCTATGATAGTGACAATGGTCCTCGGTTTACTTTTGACAGAATTGATTGGGTCCCTATTGACTCTCAAGAAAGTGCAAATTTGGAGAAGCCTTTTAGCAAGGAGGAGATAATCAAAGCGATTCAAGGCCTTAGCAATCTCAGATGA

Coding sequence (CDS)

ATGATTCCACTACATCCAAATTTGAATACTAAGGGCCATATTGGACAGACCCCGAAGGCACCAACAATAATTCCCTTGGGAGCGGGCTTGAAAGGAAAATGCAAGGATGTTGTTCTAAATGGATTTGTGAATAGCAGAGAAATAGTTCTTATAATCAAAAAGAATAATATGTGCATTAGACCAATTTCTGGAAATTCGATGAAGAAAGGTTGTACAGCCAAGAAGAGACGCAATAGAGAGGTCACCAATCTCCTTGGAACATGGGAAAAAGAGGCCAATGAAGACAACTTGTTAGATCCTCCCATGGCCAACAGTAGATTCTCTCGAACTAGAATGGGGGAGAGAGTGACTACCTCAAGGATTGATAGAGTCCTAATATCTAGGCAATGGGCTGAAAACTTCAAAGAACACAGGTTGTATAGGTTGCATCGACCCACCTCTAACCATTTCCCCAAAGCTCTTTCTTTAGGAGCTTTGAACTGGGAAGCAGAGATAGAGGAAGAGATTGTTGACTTCTATAGGATGCTCTATGATAGTGACAATGGTCCTCGGTTTACTTTTGACAGAATTGATTGGGTCCCTATTGACTCTCAAGAAAGTGCAAATTTGGAGAAGCCTTTTAGCAAGGAGGAGATAATCAAAGCGATTCAAGGCCTTAGCAATCTCAGATGA

Protein sequence

MIPLHPNLNTKGHIGQTPKAPTIIPLGAGLKGKCKDVVLNGFVNSREIVLIIKKNNMCIRPISGNSMKKGCTAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSLGALNWEAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAIQGLSNLR

Homology

[Close]

BLAST of Lag0017426 vs. NCBI nr
Match: RVW27524.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-12
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 0


Query: 94  EDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKA 153
           E+ L+DPP+ ++ F+ + M E     R+DR L S +W + F +     L R TS+H+P  
Sbjct: 137 ENELIDPPLRSASFTWSNMQEHPVCKRLDRFLYSNEWEQLFPQRLQDVLPRWTSDHWPIV 196

Query: 154 LSLGALNW-------------------------EAEIEEEIVDFYRMLYDSDNGPRFTFD 213
           L      W                            I+EEI+ ++  LY S +G  +  +
Sbjct: 197 LETNPFKWGPTPFRRNRKFIKVLENERGLVLDNSDSIKEEILRYFEKLYASPSGESWRVE 256

Query: 214 RIDWVPIDSQESANLEKPFSKEEIIKAI 217
            +DW PI S+ ++ LE PF++EEI KAI
Sbjct: 257 GLDWSPISSESASRLESPFTEEEISKAI 284

[Close]

BLAST of Lag0017426 vs. NCBI nr
Match: RVX08242.1 (hypothetical protein CK203_017636 [Vitis vinifera])

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-11
Identity = 47/170 (27.65%), Postives = 79/170 (46.47%), Query Frame = 0


Query: 72  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWA 131
           +++K     +T+ +  ++    E  LLDPP+ N+ F+ + + E     R+DR L S +W 
Sbjct: 422 SSEKLGGSRLTSNMRDFDSFIRECELLDPPLRNASFTWSNLQESPVCKRLDRFLYSNEWG 481

Query: 132 ENFKEHRLYRLHRPTSNHFPKALSLGALNWEA-------------------------EIE 191
           + F +     L R TSNH+P +L      W +                          I 
Sbjct: 482 QLFPQGLQEALIRRTSNHWPISLDTNPFIWGSTPFRRNRKYIKELENERGLVLNNAKRIT 541

Query: 192 EEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI 217
           E+I+ ++  LY S  G  ++ + +DW PI  + +  L+ PF +EEI KAI
Sbjct: 542 EDILFYFEKLYASPTGESWSIEGLDWSPISEESAIRLDSPFIEEEISKAI 591

[Close]

BLAST of Lag0017426 vs. NCBI nr
Match: CAN68464.1 (hypothetical protein VITISV_016830 [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-11
Identity = 46/167 (27.54%), Postives = 75/167 (44.91%), Query Frame = 0


Query: 72  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWA 131
           +++K     +T+ +  ++    E  L DPP+ N+ F+ + M E     R+DR + S +W 
Sbjct: 772 SSEKLGGYSLTSSMKDFDGFTRECELFDPPLRNAPFTWSNMQEFPVCKRLDRFMYSNEWE 831

Query: 132 ENFKEHRLYRLHRPTSNHFPKALSLGALNW----------------------EAEIEEEI 191
             F +     L R TS+H+P  L      W                         I EE 
Sbjct: 832 HYFPQSLQEALPRRTSDHWPIVLETNPFKWGPTPFRKFIKVLENERGIVLNNSESIIEET 891

Query: 192 VDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI 217
           + ++  LY S  G  +  + +DW PI  + ++ L+ PF+KEEI KAI
Sbjct: 892 LLYFEKLYSSPTGESWRVEGLDWSPISEESASRLDSPFTKEEIYKAI 938

[Close]

BLAST of Lag0017426 vs. NCBI nr
Match: RVW55743.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-10
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 99  DPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSL-- 158
           D P+ ++ F+ + M       R+DR L S +W + F +     L R TS+H+P  L L  
Sbjct: 165 DLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLELIR 224

Query: 159 --GALNWEAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIK 217
             G       I+EEI+ ++  LY S +G  +  + +DW PI  + +  LE PF++EEI K
Sbjct: 225 SSGVQRRSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESAFRLESPFTEEEIFK 284

[Close]

BLAST of Lag0017426 vs. NCBI nr
Match: XP_034710512.1 (uncharacterized protein LOC117933236 [Vitis riparia])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-09
Identity = 44/170 (25.88%), Postives = 78/170 (45.88%), Query Frame = 0


Query: 72  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWA 131
           +++K     +T  +  ++    +  L+D P+ ++ ++ + M E     R+DR L S +W 
Sbjct: 147 SSEKLGGSRLTPSMKDFDDFIRDCELIDSPLRSASYTSSNMQENPVCKRLDRFLYSNEWE 206

Query: 132 ENFKEHRLYRLHRPTSNHFPKALSLGALNW-------------------------EAEIE 191
           + F +     L R TS+H+P  L      W                            I+
Sbjct: 207 QVFPQSLQGVLPRWTSDHWPIVLETNPFKWGPTPFRRNRKFIKELENESDLMLNNPESIK 266

Query: 192 EEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI 217
           EEI+ ++  LY S +G  +  + +DW PI  + ++ LE PF++EEI KAI
Sbjct: 267 EEILRYFEKLYASPSGESWRVEGLDWSPISGESASRLESPFTEEEIYKAI 316

[Close]

BLAST of Lag0017426 vs. ExPASy TrEMBL
Match: A0A438CWE0 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_278 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-12
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 0


Query: 94  EDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKA 153
           E+ L+DPP+ ++ F+ + M E     R+DR L S +W + F +     L R TS+H+P  
Sbjct: 137 ENELIDPPLRSASFTWSNMQEHPVCKRLDRFLYSNEWEQLFPQRLQDVLPRWTSDHWPIV 196

Query: 154 LSLGALNW-------------------------EAEIEEEIVDFYRMLYDSDNGPRFTFD 213
           L      W                            I+EEI+ ++  LY S +G  +  +
Sbjct: 197 LETNPFKWGPTPFRRNRKFIKVLENERGLVLDNSDSIKEEILRYFEKLYASPSGESWRVE 256

Query: 214 RIDWVPIDSQESANLEKPFSKEEIIKAI 217
            +DW PI S+ ++ LE PF++EEI KAI
Sbjct: 257 GLDWSPISSESASRLESPFTEEEISKAI 284

[Close]

BLAST of Lag0017426 vs. ExPASy TrEMBL
Match: A0A438JH21 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_017636 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 47/170 (27.65%), Postives = 79/170 (46.47%), Query Frame = 0


Query: 72  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWA 131
           +++K     +T+ +  ++    E  LLDPP+ N+ F+ + + E     R+DR L S +W 
Sbjct: 422 SSEKLGGSRLTSNMRDFDSFIRECELLDPPLRNASFTWSNLQESPVCKRLDRFLYSNEWG 481

Query: 132 ENFKEHRLYRLHRPTSNHFPKALSLGALNWEA-------------------------EIE 191
           + F +     L R TSNH+P +L      W +                          I 
Sbjct: 482 QLFPQGLQEALIRRTSNHWPISLDTNPFIWGSTPFRRNRKYIKELENERGLVLNNAKRIT 541

Query: 192 EEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI 217
           E+I+ ++  LY S  G  ++ + +DW PI  + +  L+ PF +EEI KAI
Sbjct: 542 EDILFYFEKLYASPTGESWSIEGLDWSPISEESAIRLDSPFIEEEISKAI 591

[Close]

BLAST of Lag0017426 vs. ExPASy TrEMBL
Match: A5BZ13 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_016830 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-11
Identity = 46/167 (27.54%), Postives = 75/167 (44.91%), Query Frame = 0


Query: 72  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWA 131
           +++K     +T+ +  ++    E  L DPP+ N+ F+ + M E     R+DR + S +W 
Sbjct: 772 SSEKLGGYSLTSSMKDFDGFTRECELFDPPLRNAPFTWSNMQEFPVCKRLDRFMYSNEWE 831

Query: 132 ENFKEHRLYRLHRPTSNHFPKALSLGALNW----------------------EAEIEEEI 191
             F +     L R TS+H+P  L      W                         I EE 
Sbjct: 832 HYFPQSLQEALPRRTSDHWPIVLETNPFKWGPTPFRKFIKVLENERGIVLNNSESIIEET 891

Query: 192 VDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAI 217
           + ++  LY S  G  +  + +DW PI  + ++ L+ PF+KEEI KAI
Sbjct: 892 LLYFEKLYSSPTGESWRVEGLDWSPISEESASRLDSPFTKEEIYKAI 938

[Close]

BLAST of Lag0017426 vs. ExPASy TrEMBL
Match: A0A438F705 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_618 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 0


Query: 99  DPPMANSRFSRTRMGERVTTSRIDRVLISRQWAENFKEHRLYRLHRPTSNHFPKALSL-- 158
           D P+ ++ F+ + M       R+DR L S +W + F +     L R TS+H+P  L L  
Sbjct: 165 DLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLELIR 224

Query: 159 --GALNWEAEIEEEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIK 217
             G       I+EEI+ ++  LY S +G  +  + +DW PI  + +  LE PF++EEI K
Sbjct: 225 SSGVQRRSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESAFRLESPFTEEEIFK 284

[Close]

BLAST of Lag0017426 vs. ExPASy TrEMBL
Match: A0A438IT31 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_029144 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 47/177 (26.55%), Postives = 82/177 (46.33%), Query Frame = 0


Query: 72  TAKKRRNREVTNLLGTWEKEANEDNLLDPPMANSRFSRTRMGERVTTSRIDRVLISRQWA 131
           +++K     +T  +  ++    E  L+D P+ ++ F+ + M E +   R+DR L S +W 
Sbjct: 198 SSEKLGGSSLTPSMKDFDDFIRECELIDSPLRSTPFTWSNMQESLVCKRLDRFLYSNEWE 257

Query: 132 ENFKEHRLYRLHRPTSNHFPKALSLG-------------------------ALNWEAEIE 191
           + F +     L R TS+H+P  L                             LN    I+
Sbjct: 258 QLFPQSLQEVLPRWTSDHWPIVLETNPFKCGPTPFRRNRKYIKVLENEKGLVLNNSESIK 317

Query: 192 EEIVDFYRMLYDSDNGPRFTFDRIDWVPIDSQESANLEKPFSKEEIIKAIQGLSNLR 224
           EEI+ ++  LY S +G  +  + +DW  I  + ++ L+ PF++EEI KAI  L N +
Sbjct: 318 EEILRYFEKLYSSPSGESWRVEDLDWSLISGESASRLDSPFTEEEISKAIFQLDNYK 374

The following BLAST results are available for this feature:

BLAST of Lag0017426 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW27524.1	5.4e-12	31.08	putative ribonuclease H protein [Vitis vinifera]	[more]
RVX08242.1	3.5e-11	27.65	hypothetical protein CK203_017636 [Vitis vinifera]	[more]
CAN68464.1	7.7e-11	27.54	hypothetical protein VITISV_016830 [Vitis vinifera]	[more]
RVW55743.1	2.3e-10	34.43	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
XP_034710512.1	1.1e-09	25.88	uncharacterized protein LOC117933236 [Vitis riparia]	[more]

BLAST of Lag0017426 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438CWE0	2.6e-12	31.08	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_278 P...	[more]
A0A438JH21	1.7e-11	27.65	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_017636 PE=4 SV=1	[more]
A5BZ13	3.8e-11	27.54	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438F705	1.1e-10	34.43	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438IT31	1.2e-09	26.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_029144 PE=4 SV=1	[more]

BLAST of Lag0017426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 91..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017426.1	Lag0017426.1	mRNA