Lag0017397 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017397
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSWIM-type domain-containing protein
Locationchr5: 3216707 .. 3217299 (+)
RNA-Seq ExpressionLag0017397
SyntenyLag0017397
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCACGATGGTCATTGGAACGATAGTGAGAATTATATGGACTTTGAACTCTCGATATTTATAAGAGATCAAATTGCAATGGGTCGTTCGATGCAGGTCAGTACATCTTATTTCTGTATAGTATACTTTGAACTCTCGATATTTATATTCTATTTTTTCAGGTCAATTCAGTAGACAATGTCCAATTTCAAGTAATAGATGGTACTAGTCAACACGATGTTCATTTAACAGCCAGAAGATGCAGTTGTAGGATGTGGGACATTTTGGAGATTCCATGTTCTCATGCATGTGTCGTTTTGACTTCGAAGCACTTGTCTATGAAGGAGTATATATCAAATTTCTACTTGAATAGTACTCTCTCTTCAATATACAGTGGTCTAATCCATCCATTAGGCAATGAGTCTAGTTGGCATATCCCCGATGACATAAAAAAATATATCAGTTCTCCCCCAAACGTTAAGCGTTCCGTTGGTAGGCCAAAGAAGACCAGAATCCCCTCACATATGGAGTTCAAAAGACGGGTTAAATGTGGTCGTTGTGGCAGGATTGGGCATAATAAGAAGACTTGCAGATTTGCACCAACTCAGTAG

mRNA sequence

ATGCTGCACGATGGTCATTGGAACGATAGTGAGAATTATATGGACTTTGAACTCTCGATATTTATAAGAGATCAAATTGCAATGGGTCGTTCGATGCAGGTCAATTCAGTAGACAATGTCCAATTTCAAGTAATAGATGGTACTAGTCAACACGATGTTCATTTAACAGCCAGAAGATGCAGTTGTAGGATGTGGGACATTTTGGAGATTCCATGTTCTCATGCATGTGTCGTTTTGACTTCGAAGCACTTGTCTATGAAGGAGTATATATCAAATTTCTACTTGAATAGTACTCTCTCTTCAATATACAGTGGTCTAATCCATCCATTAGGCAATGAGTCTAGTTGGCATATCCCCGATGACATAAAAAAATATATCAGTTCTCCCCCAAACGTTAAGCGTTCCGTTGGTAGGCCAAAGAAGACCAGAATCCCCTCACATATGGAGTTCAAAAGACGGGTTAAATGTGGTCGTTGTGGCAGGATTGGGCATAATAAGAAGACTTGCAGATTTGCACCAACTCAGTAG

Coding sequence (CDS)

ATGCTGCACGATGGTCATTGGAACGATAGTGAGAATTATATGGACTTTGAACTCTCGATATTTATAAGAGATCAAATTGCAATGGGTCGTTCGATGCAGGTCAATTCAGTAGACAATGTCCAATTTCAAGTAATAGATGGTACTAGTCAACACGATGTTCATTTAACAGCCAGAAGATGCAGTTGTAGGATGTGGGACATTTTGGAGATTCCATGTTCTCATGCATGTGTCGTTTTGACTTCGAAGCACTTGTCTATGAAGGAGTATATATCAAATTTCTACTTGAATAGTACTCTCTCTTCAATATACAGTGGTCTAATCCATCCATTAGGCAATGAGTCTAGTTGGCATATCCCCGATGACATAAAAAAATATATCAGTTCTCCCCCAAACGTTAAGCGTTCCGTTGGTAGGCCAAAGAAGACCAGAATCCCCTCACATATGGAGTTCAAAAGACGGGTTAAATGTGGTCGTTGTGGCAGGATTGGGCATAATAAGAAGACTTGCAGATTTGCACCAACTCAGTAG

Protein sequence

MLHDGHWNDSENYMDFELSIFIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAPTQ
Homology
BLAST of Lag0017397 vs. NCBI nr
Match: XP_038880504.1 (uncharacterized protein LOC120072166 [Benincasa hispida])

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-29
Identity = 71/162 (43.83%), Postives = 103/162 (63.58%), Query Frame = 0

Query: 12  NYMDFELSIFIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIP 71
           ++ +FEL    R+Q    RS +V+ ++N +++VIDG +   V+L  + CSCR+WD++EIP
Sbjct: 116 SWAEFEL----REQHNQSRSFKVDPINNEEYKVIDGDNHFLVNLAYKSCSCRVWDLVEIP 175

Query: 72  CSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPN 131
           C+HAC V+   +L +  ++ ++Y  STL S Y G ++P+GN S W   D     +  PP 
Sbjct: 176 CAHACAVICGLNLDIYTFVLDYYFCSTLLSTYKGSVYPIGNHSDWRSIDVGVNVL--PPI 235

Query: 132 VKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP 174
           VKR VGRP+K RI S  E KR  KC RC R GHN +TC+F P
Sbjct: 236 VKRPVGRPRKQRILSIGEKKRSSKCSRCHRRGHNCRTCKFPP 271

BLAST of Lag0017397 vs. NCBI nr
Match: KAA0051992.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK04566.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 7.1e-28
Identity = 74/162 (45.68%), Postives = 100/162 (61.73%), Query Frame = 0

Query: 8   NDSE-NYMDFELSI--FIRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRM 67
           ND++    DF  +I   +R+QI + RSM+VN V+N+++QVI+GTSQ+ ++L         
Sbjct: 173 NDADYQVTDFTKTIVGLLREQIELSRSMKVNQVNNLKYQVINGTSQYVIYLPT------- 232

Query: 68  WDILEIPCSHACVVLTSKHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKK 127
                                 K ++S  YLNSTLSS Y  +I+PLG+   W IPDDI  
Sbjct: 233 ----------------------KSHVSPLYLNSTLSSRYRPVINPLGDHCQWQIPDDIMS 292

Query: 128 YISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCGRCGRIGHNK 167
            +  PPNVKR+VGRPKK +I S +EFKRRVKCGRCGR+GHN+
Sbjct: 293 IVILPPNVKRAVGRPKKFKILSRIEFKRRVKCGRCGRVGHNR 305

BLAST of Lag0017397 vs. NCBI nr
Match: XP_022155207.1 (uncharacterized protein LOC111022347 [Momordica charantia])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-27
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 0

Query: 38  DNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYISNFYLNS 97
           ++V FQ+   T   +  L+ +  +CR   +  +        +  KHL  K Y+S++Y N+
Sbjct: 444 NDVDFQITKFTKSAESKLSEQISACRTMKVYAVNND-----IYQKHLPKKGYVSSYYSNN 503

Query: 98  TLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSHMEFKRRVKCG 157
            LSS YSG IHPLG++SSW+IP+D+K      PNVKR  GRPKK RIPS +EFK+RVKC 
Sbjct: 504 YLSSTYSGSIHPLGHQSSWNIPEDVKIIKMLLPNVKRPAGRPKKLRIPSALEFKKRVKCS 563

Query: 158 RCGRIGHNKKTCRFAPTQ 176
           RCGR GHN+K+C+F+ TQ
Sbjct: 564 RCGRYGHNRKSCKFSLTQ 576

BLAST of Lag0017397 vs. NCBI nr
Match: PON58068.1 (Zinc finger, PMZ-type [Trema orientale])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-27
Identity = 61/142 (42.96%), Postives = 83/142 (58.45%), Query Frame = 0

Query: 32  MQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTSKHLSMKEYIS 91
           M+V     + F+ I+GT+  +V+L  + CSC  + + E+PCSHA  V   KHLS  +Y S
Sbjct: 68  MKVQQASEIIFKAIEGTNSFEVNLEEKTCSCNRFQMDELPCSHAMAVFAKKHLSSYDYCS 127

Query: 92  NFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSHMEFK 151
            +Y   T+ + Y G +HP+GN   W IP+ I +     P  KR  GRPKK RIPS  E K
Sbjct: 128 KYYKKETMLATYEGTVHPVGNPKEWTIPNSISEIKLKTPKGKRKAGRPKKKRIPSAGEPK 187

Query: 152 RRVKCGRCGRIGHNKKTCRFAP 174
            + +CGRC   GHN+ TCR  P
Sbjct: 188 AKTRCGRCKEYGHNRVTCRNPP 209

BLAST of Lag0017397 vs. NCBI nr
Match: KAA0032265.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 2.7e-27
Identity = 63/152 (41.45%), Postives = 89/152 (58.55%), Query Frame = 0

Query: 22  IRDQIAMGRSMQVNSVDNVQFQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACVVLTS 81
           IR  +   RS  VN V  V+FQV+DG     V L    CSC  WD+ EIPC+HA +V+ S
Sbjct: 58  IRKLVDESRSFIVNPVSEVEFQVVDGGKNFLVKLNCNSCSCLFWDLKEIPCAHALIVICS 117

Query: 82  KHLSMKEYISNFYLNSTLSSIYSGLIHPLGNESSWHIPDDIKKYISSPPNVKRSVGRPKK 141
            +L+   ++  +Y  + L + Y GL+ P+GN + W + +     +  PP  +R  GRP+K
Sbjct: 118 LNLNPYAFVPQYYYATVLFATYDGLVRPIGNHTDWSVVEVNDNIL--PPVFRRPAGRPRK 177

Query: 142 TRIPSHMEFKRRVKCGRCGRIGHNKKTCRFAP 174
            RIPS  E  + +KC RC R+GHN +TCRF P
Sbjct: 178 RRIPSIGEVSKNLKCSRCKRVGHNIRTCRFEP 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038880504.11.3e-2943.83uncharacterized protein LOC120072166 [Benincasa hispida][more]
KAA0051992.17.1e-2845.68protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK04566.1 prot... [more]
XP_022155207.11.2e-2747.83uncharacterized protein LOC111022347 [Momordica charantia][more]
PON58068.12.1e-2742.96Zinc finger, PMZ-type [Trema orientale][more]
KAA0032265.12.7e-2741.45MuDRA-like transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 58..85
e-value: 3.4E-6
score: 36.6
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 53..82
e-value: 2.3E-7
score: 30.3
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 42..83
score: 9.346741
NoneNo IPR availablePANTHERPTHR31973POLYPROTEIN, PUTATIVE-RELATEDcoord: 32..169
NoneNo IPR availablePANTHERPTHR31973:SF93MUDR FAMILY TRANSPOSASE ISOFORM 1coord: 32..169
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 155..170
score: 8.663751

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017397.1Lag0017397.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding