Lag0017356 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017356
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr5: 2670798 .. 2671550 (+)
RNA-Seq Expression	Lag0017356
Synteny	Lag0017356

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTACTATGCTGGAACGTTCGGGGATTGGGGAATCCTCGAGCGATCCGCAGCCTAAAGAATGAGATAAGGAAAAATTCCCCAAGCATCTTATTCATTTCTGAAACCAAATGCAACGATAACAAGGCAGATTCGTTGAAGCTCGAGTTGGGCTTTGACTTTTGTTTCGCGGTTAGCAATAGGGGCAGTAGTGGAGGGTTAGTCCTATACTGGAACAACTCAACTGATTTATCAGTTAAGTCTTTTTCTAAGGGGCATGTCGACACTGTTATTAAAGAGCCTGATATGAGCTGGCGGTTTACGGGTTTCTATGGGGATCCAGACCCTAACAAAAGAAACCAGTCCTGGCAGCTTTTGGAGAGACTGAACGATAACGGCAACCTCCCTTGGATCTTGGGAGGAGATTTCAATGAAATTATTTGCGAGAATGAGAAGGAAGGTGGAGCCCAAAAGGCAAAAAAGGGCATAGATGATTTCAGAGAGACTTTGGACAATTTTTGCCTGTTGGATCCCGGGTTTTCAAGGGCCAAGCACACTTGGAGGAGAGGCAAGACAGCAACCTCTAAAGTCAAAGAGAGACTTAATAGATTCCTGATAAATCATGATATGCACAGAAGCTTCCAGTCCATCAAGGTTCAAAACTTAAGCTTCAACTCGTCAGATCACAGACCTATTTTGGCCACATTAGAGTCGCACGGTCCAAAGGCCTCTAGAAGGAAAGCCAAGAAGAAAAAATTCGAGGAAGCTTAG

mRNA sequence

ATGAAACTACTATGCTGGAACGTTCGGGGATTGGGGAATCCTCGAGCGATCCGCAGCCTAAAGAATGAGATAAGGAAAAATTCCCCAAGCATCTTATTCATTTCTGAAACCAAATGCAACGATAACAAGGCAGATTCGTTGAAGCTCGAGTTGGGCTTTGACTTTTGTTTCGCGGTTAGCAATAGGGGCAGTAGTGGAGGGTTAGTCCTATACTGGAACAACTCAACTGATTTATCAGTTAAGTCTTTTTCTAAGGGGCATGTCGACACTGTTATTAAAGAGCCTGATATGAGCTGGCGGTTTACGGGTTTCTATGGGGATCCAGACCCTAACAAAAGAAACCAGTCCTGGCAGCTTTTGGAGAGACTGAACGATAACGGCAACCTCCCTTGGATCTTGGGAGGAGATTTCAATGAAATTATTTGCGAGAATGAGAAGGAAGGTGGAGCCCAAAAGGCAAAAAAGGGCATAGATGATTTCAGAGAGACTTTGGACAATTTTTGCCTGTTGGATCCCGGGTTTTCAAGGGCCAAGCACACTTGGAGGAGAGGCAAGACAGCAACCTCTAAAGTCAAAGAGAGACTTAATAGATTCCTGATAAATCATGATATGCACAGAAGCTTCCAGTCCATCAAGGTTCAAAACTTAAGCTTCAACTCGTCAGATCACAGACCTATTTTGGCCACATTAGAGTCGCACGGTCCAAAGGCCTCTAGAAGGAAAGCCAAGAAGAAAAAATTCGAGGAAGCTTAG

Coding sequence (CDS)

ATGAAACTACTATGCTGGAACGTTCGGGGATTGGGGAATCCTCGAGCGATCCGCAGCCTAAAGAATGAGATAAGGAAAAATTCCCCAAGCATCTTATTCATTTCTGAAACCAAATGCAACGATAACAAGGCAGATTCGTTGAAGCTCGAGTTGGGCTTTGACTTTTGTTTCGCGGTTAGCAATAGGGGCAGTAGTGGAGGGTTAGTCCTATACTGGAACAACTCAACTGATTTATCAGTTAAGTCTTTTTCTAAGGGGCATGTCGACACTGTTATTAAAGAGCCTGATATGAGCTGGCGGTTTACGGGTTTCTATGGGGATCCAGACCCTAACAAAAGAAACCAGTCCTGGCAGCTTTTGGAGAGACTGAACGATAACGGCAACCTCCCTTGGATCTTGGGAGGAGATTTCAATGAAATTATTTGCGAGAATGAGAAGGAAGGTGGAGCCCAAAAGGCAAAAAAGGGCATAGATGATTTCAGAGAGACTTTGGACAATTTTTGCCTGTTGGATCCCGGGTTTTCAAGGGCCAAGCACACTTGGAGGAGAGGCAAGACAGCAACCTCTAAAGTCAAAGAGAGACTTAATAGATTCCTGATAAATCATGATATGCACAGAAGCTTCCAGTCCATCAAGGTTCAAAACTTAAGCTTCAACTCGTCAGATCACAGACCTATTTTGGCCACATTAGAGTCGCACGGTCCAAAGGCCTCTAGAAGGAAAGCCAAGAAGAAAAAATTCGAGGAAGCTTAG

Protein sequence

MKLLCWNVRGLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVSNRGSSGGLVLYWNNSTDLSVKSFSKGHVDTVIKEPDMSWRFTGFYGDPDPNKRNQSWQLLERLNDNGNLPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAKHTWRRGKTATSKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPILATLESHGPKASRRKAKKKKFEEA

Homology

[Close]

BLAST of Lag0017356 vs. NCBI nr
Match: KAF4351405.1 (hypothetical protein F8388_001025, partial [Cannabis sativa])

HSP 1 Score: 214.5 bits (545), Expect = 1.0e-51
Identity = 111/239 (46.44%), Postives = 152/239 (63.60%), Query Frame = 0


Query: 10  GLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVSNRGSSGGLV 69
           GLGNP A+ +L+  +RK SPS++F+SETK     A+ ++ ++ F   F V   G SGGL+
Sbjct: 571 GLGNPGALTALRTVVRKYSPSLVFLSETKLYGGWAEGIRRQISFSNSFHVDCVGKSGGLL 630

Query: 70  LYWNNSTDLSVKSFSKGHVDTVIKEPDMS-WRFTGFYGDPDPNKRNQSWQLLERLNDNGN 129
           L WN+  ++SVKSFS GH+D ++K P ++ WRFTGFYG+P  + R  SWQLL RL    +
Sbjct: 631 LLWNDDWEVSVKSFSVGHIDALVKCPGLNVWRFTGFYGNPKASSRIDSWQLLCRLKGLFD 690

Query: 130 LPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAKHTWRRGKTAT 189
           LPWI GGDFNEI+  NEK+GG  ++   I DF++ LD   L+D GF     TW   +   
Sbjct: 691 LPWICGGDFNEILSINEKKGGVDRSLSAISDFQQALDKCDLVDMGFEGQCFTWLNKRQGV 750

Query: 190 SKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPILATLESHGPKASRRKAKKKKF 248
           + V+ERL+R+  N + H  F S+KV N  F  SDHRPI A LE+     +R+  KKK F
Sbjct: 751 AHVQERLDRYFCNQEWHNLFPSVKVVNGDFIHSDHRPIAAILEN--VVCNRQYDKKKSF 807

[Close]

BLAST of Lag0017356 vs. NCBI nr
Match: XP_028075737.1 (uncharacterized protein LOC114277953 [Camellia sinensis])

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-50
Identity = 105/249 (42.17%), Postives = 150/249 (60.24%), Query Frame = 0


Query: 1   MKLLCWNVRGLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVS 60
           MK+LCWN RGLGNPR +R L+  ++K  P+++F+ ETK +    + ++ +LG   CF V 
Sbjct: 1   MKILCWNCRGLGNPRTVRFLQLLLKKEVPTMVFLVETKLDARAMERIRCKLGLQRCFTVD 60

Query: 61  NRGSSGGLVLYWNNSTDLSVKSFSKGHVDTVIKEPD--MSWRFTGFYGDPDPNKRNQSWQ 120
             G SGGL L W     L +KSFS+GHVD++I       SW FTGFYG+P  + R+ SW+
Sbjct: 61  RVGLSGGLALLWVGEIQLQIKSFSRGHVDSIILSESGVASWCFTGFYGNPIASLRSDSWE 120

Query: 121 LLERLNDNGNLPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAK 180
           LL RL D  +LPW+  GDFNEI+  +EK G A ++++ +D FR+ L +  L D GF  A 
Sbjct: 121 LLRRLQDQMHLPWLCAGDFNEILYAHEKSGMAARSQRQMDGFRQVLSDCDLADLGFEGAA 180

Query: 181 HTWRRGKTATSKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPILATLESHGPKAS 240
            TW  G+     ++ERL+R ++N     SF   +V +L   SSDH PIL  LE    + +
Sbjct: 181 FTWCNGRAGDGMIRERLDRCVVNERWLNSFPMARVYHLGGTSSDHLPILLDLEGVKAQMA 240

Query: 241 RRKAKKKKF 248
            R   +K +
Sbjct: 241 HRPKYRKLY 249

[Close]

BLAST of Lag0017356 vs. NCBI nr
Match: KAG6649980.1 (hypothetical protein CIPAW_06G011600 [Carya illinoinensis])

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-49
Identity = 101/243 (41.56%), Postives = 150/243 (61.73%), Query Frame = 0


Query: 1   MKLLCWNVRGLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVS 60
           M  L WN RGLGNPR I  L   ++  SP ++F+ ETKC+  K ++++++ GFD CFAV 
Sbjct: 1   MICLSWNCRGLGNPRTIHELLQLVKTKSPHLVFLLETKCSSEKMETIRVKSGFDNCFAVG 60

Query: 61  NRGSSGGLVLYWNNSTDLSVKSFSKGHVDTVIKEP--DMSWRFTGFYGDPDPNKRNQSWQ 120
           N G SGGL L WN+S ++ V +F+  H+   +K P  D SW  TGFYG P+  KR+++WQ
Sbjct: 61  NVGRSGGLALMWNSSIEVKVDTFTNWHISVHVKLPNSDKSWLLTGFYGYPNTTKRSETWQ 120

Query: 121 LLERLNDNGNLPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAK 180
           +L+ L     +PW+  GDFNEI C +EK G A +  K + DFR+TL    L D G+   K
Sbjct: 121 ILKALKPAPQVPWLCFGDFNEITCLSEKFGAAIRPYKQVRDFRQTLAQCELNDLGYQGDK 180

Query: 181 HTWRRGKTATSKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPILATLESHGPKAS 240
           +TW   +  ++  KERL+R L N      F+   V++L+  SSDH+P+L TL++   +  
Sbjct: 181 YTWANNREGSNFTKERLDRVLGNSSWIDKFEDHSVEHLATYSSDHKPLLITLKTKNNRPR 240

Query: 241 RRK 242
           +++
Sbjct: 241 KKR 243

[Close]

BLAST of Lag0017356 vs. NCBI nr
Match: XP_038697213.1 (uncharacterized protein LOC119994946 [Tripterygium wilfordii])

HSP 1 Score: 205.3 bits (521), Expect = 6.2e-49
Identity = 101/244 (41.39%), Postives = 150/244 (61.48%), Query Frame = 0


Query: 1   MKLLCWNVRGLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVS 60
           MK++ WN RGLG+PR + +L   ++ +SP ILF+SET+ + + ++ L+L+L F+FCF V 
Sbjct: 1   MKIILWNCRGLGHPRTVHALLRMVQHHSPDILFLSETRLSSSSSERLRLKLQFNFCFPVL 60

Query: 61  NRGSSGGLVLYWNNSTDLSVKSFSKGHVDTVIKEPD-MSWRFTGFYGDPDPNKRNQSWQL 120
             G  GGL++ WN S  L+V SFS  H+DTVI   D +SWRFTG YG P    R   W L
Sbjct: 61  RSGLGGGLLVMWNASCPLTVSSFSSSHIDTVINLQDALSWRFTGIYGSPSTGSRPAFWSL 120

Query: 121 LERLNDNGNLPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAKH 180
           L RL    +LPW+ GGDFNEI+  +E  G   +A+  + +FR+ L +  L D G+S    
Sbjct: 121 LRRLAAASSLPWVCGGDFNEILSNSEIAGSNGRAEYLMQNFRDALQDCALCDIGYSGYSF 180

Query: 181 TWRRGKTATSKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPILATLESHGPKASR 240
           TW   ++ T+ V+ERL+R + +    + F    +++L+  +SDH P+L T+ S GP  S 
Sbjct: 181 TWSNNRSGTALVEERLDRVVSSDSWSQQFLGAYLRHLASPASDHSPLLLTI-SRGPTISN 240

Query: 241 RKAK 244
           R  +
Sbjct: 241 RSCR 243

[Close]

BLAST of Lag0017356 vs. NCBI nr
Match: KAG4109659.1 (hypothetical protein ERO13_1Z049785v2, partial [Gossypium hirsutum])

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-48
Identity = 100/241 (41.49%), Postives = 147/241 (61.00%), Query Frame = 0


Query: 1   MKLLCWNVRGLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVS 60
           M+++CWN RG+GNP A+R LK  +  N P I+F+ ETK N NK D ++ +   + C AV+
Sbjct: 1   MRIICWNYRGVGNPVAVRDLKQLLVANDPDIIFLCETKSNANKFDFVRRKCRMEGCLAVN 60

Query: 61  NRGSSGGLVLYWNNSTDLSVKSFSKGHVDTVIK-EPDMSWRFTGFYGDPDPNKRNQSWQL 120
             G SGGLV+ W +S  + ++++S  H+D++I  E D   RFTGFYG+ DPNKR  SW +
Sbjct: 61  AEGRSGGLVMMWKDSKQVEIQTYSSNHIDSLIHVENDSPIRFTGFYGNADPNKRQSSWNM 120

Query: 121 LERLNDNGNLPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAKH 180
           L R+    N  WI+GGDFN ++ E EKEG  +KA   +DDFR  +D   ++D        
Sbjct: 121 LRRVGQTVNEKWIIGGDFNALLDEAEKEGRRRKATVLMDDFRSIVDELSMVDLKTDNGWF 180

Query: 181 TWRRGKTATSKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPILATLESHGPKASR 240
           TW   K  T++VKERL+RFL++ ++  SF  ++ + +  +SSDH  I    E   P+   
Sbjct: 181 TWVNNKEGTARVKERLDRFLMSANVVNSFLFLETRVIRQSSSDHDAISLDTEGRRPRDGL 240

[Close]

BLAST of Lag0017356 vs. ExPASy TrEMBL
Match: A0A7J6DZ24 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_001025 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 4.9e-52
Identity = 111/239 (46.44%), Postives = 152/239 (63.60%), Query Frame = 0


Query: 10  GLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVSNRGSSGGLV 69
           GLGNP A+ +L+  +RK SPS++F+SETK     A+ ++ ++ F   F V   G SGGL+
Sbjct: 571 GLGNPGALTALRTVVRKYSPSLVFLSETKLYGGWAEGIRRQISFSNSFHVDCVGKSGGLL 630

Query: 70  LYWNNSTDLSVKSFSKGHVDTVIKEPDMS-WRFTGFYGDPDPNKRNQSWQLLERLNDNGN 129
           L WN+  ++SVKSFS GH+D ++K P ++ WRFTGFYG+P  + R  SWQLL RL    +
Sbjct: 631 LLWNDDWEVSVKSFSVGHIDALVKCPGLNVWRFTGFYGNPKASSRIDSWQLLCRLKGLFD 690

Query: 130 LPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAKHTWRRGKTAT 189
           LPWI GGDFNEI+  NEK+GG  ++   I DF++ LD   L+D GF     TW   +   
Sbjct: 691 LPWICGGDFNEILSINEKKGGVDRSLSAISDFQQALDKCDLVDMGFEGQCFTWLNKRQGV 750

Query: 190 SKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPILATLESHGPKASRRKAKKKKF 248
           + V+ERL+R+  N + H  F S+KV N  F  SDHRPI A LE+     +R+  KKK F
Sbjct: 751 AHVQERLDRYFCNQEWHNLFPSVKVVNGDFIHSDHRPIAAILEN--VVCNRQYDKKKSF 807

[Close]

BLAST of Lag0017356 vs. ExPASy TrEMBL
Match: A0A5B6WXI9 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_007399 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 95/229 (41.48%), Postives = 143/229 (62.45%), Query Frame = 0


Query: 1   MKLLCWNVRGLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVS 60
           MK +CWNVRGLG+PRA+R L+   ++ +P I+F+ ETK N  + +S++    F   F + 
Sbjct: 1   MKTICWNVRGLGSPRAVRRLRYLCKQQNPHIVFLMETKLNQKRMESVRRRCSFSSGFEIE 60

Query: 61  NRGSSGGLVLYWNNSTDLSVKSFSKGHVDTVIKEPDM--SWRFTGFYGDPDPNKRNQSWQ 120
             GS GGL L W +   ++++S+SK H+D ++ E  +   WRFTGFYG P   +RN  W 
Sbjct: 61  AEGSRGGLCLAWKDDIVVTLRSYSKWHIDALLWEGSIQKEWRFTGFYGSPYSKERNSVWS 120

Query: 121 LLERLNDNGNLPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAK 180
           LL+RL+   + PW++ GDFNEI+   EK GG  + +K ++ FR+TL+   L D G+S  +
Sbjct: 121 LLKRLSQGNSYPWLVAGDFNEILYSFEKSGGVSQEQKRMEAFRDTLEECKLSDIGYSGMR 180

Query: 181 HTWRRGKTATSKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPIL 228
           +TW RG    + ++ERL+R + N +    F    +Q L F+SSDH PIL
Sbjct: 181 YTWERGNLPETNIRERLDRGVTNEEWLLLFSMGNIQYLPFSSSDHCPIL 229

[Close]

BLAST of Lag0017356 vs. ExPASy TrEMBL
Match: A0A5B6WSX4 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_006480 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 100/229 (43.67%), Postives = 141/229 (61.57%), Query Frame = 0


Query: 1   MKLLCWNVRGLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVS 60
           MK LCWNVRGLG+ RA+R L+  I+++ P ++F+ ETK N  +  +++   GFDF   V 
Sbjct: 1   MKSLCWNVRGLGSSRAVRRLRFLIKQHHPQLVFLMETKLNKQRMGTVRRRCGFDFGIEVE 60

Query: 61  NRGSSGGLVLYWNNSTDLSVKSFSKGHVDTVIKEPDM--SWRFTGFYGDPDPNKRNQSWQ 120
             GS GGL L W    D+ +KSFSK H+D +IKE ++   W+FTGFYG P    +N  W 
Sbjct: 61  AEGSKGGLCLAWKKDLDVKLKSFSKWHIDVLIKEENVEEDWKFTGFYGSPYSKDKNLVWD 120

Query: 121 LLERLNDNGNLPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAK 180
           LL+RL    + PW++ GDFNEI+   EK GG  +  K ++ FRETL +  L D GFS   
Sbjct: 121 LLKRLAQESDYPWLVEGDFNEILYSFEKCGGIPRDSKRMEVFRETLVDCQLYDIGFSGVS 180

Query: 181 HTWRRGKTATSKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPIL 228
           +TW RG    + ++ERL+R + N      F S  +Q+L ++ SDH P+L
Sbjct: 181 YTWERGNLPETNIRERLDRGVANEKWLTLFLSNTLQHLPYSISDHCPLL 229

[Close]

BLAST of Lag0017356 vs. ExPASy TrEMBL
Match: A0A803PPS5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 9.6e-48
Identity = 98/228 (42.98%), Postives = 146/228 (64.04%), Query Frame = 0


Query: 1   MKLLCWNVRGLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVS 60
           MK L WNV+G+GNP  +RSLK+ + + +P ++FISE++   +KA+ L++ LGF  CF V 
Sbjct: 394 MKTLLWNVQGMGNPWTVRSLKSFVVRGTPDLVFISESRLRKSKAEELRVMLGFFGCFVVE 453

Query: 61  NRGSSGGLVLYWNNSTDLSVKSFSKGHVDTVIK-EPDMSWRFTGFYGDPDPNKRNQSWQL 120
             G SG L+L W+     +++SFS  H+D+ IK E D  WRFTGFYGDPDPN+R  SW+L
Sbjct: 454 AIGKSGDLILLWSTEVTCNIRSFSSFHIDSFIKEEDDQGWRFTGFYGDPDPNRRTDSWRL 513

Query: 121 LERLNDNGNLPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAKH 180
           L R+    + PW++ GDFNEI+ +  K GG  K    +++FR+ L++ CL +  F  +K+
Sbjct: 514 LNRVGKMYSGPWVIRGDFNEILRKKVKLGGQPKPGYLMNNFRKALNDCCLREVDFEGSKY 573

Query: 181 TWRRGKTATSKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPIL 228
           TW  G+   + + ERL+R   N +    F + KV +L   +SDH P+L
Sbjct: 574 TWCNGR-PNNLIFERLDRVCGNEEWFDLFPATKVTHLDRINSDHCPLL 620

[Close]

BLAST of Lag0017356 vs. ExPASy TrEMBL
Match: A0A5D2GPG4 (Endo/exonuclease/phosphatase domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G357400v1 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 97/241 (40.25%), Postives = 145/241 (60.17%), Query Frame = 0


Query: 1   MKLLCWNVRGLGNPRAIRSLKNEIRKNSPSILFISETKCNDNKADSLKLELGFDFCFAVS 60
           M+++CWN RG+GNP  +  LK  +  N P I+F+ ETK N NK D ++ +   + C AV+
Sbjct: 1   MRIICWNCRGVGNPATVHDLKQLLVANDPDIIFLCETKSNANKFDFVRRKCRMEGCLAVN 60

Query: 61  NRGSSGGLVLYWNNSTDLSVKSFSKGHVDTVIK-EPDMSWRFTGFYGDPDPNKRNQSWQL 120
             G SGGLV+ W +S  + ++++S  H+D++I  E D   RFTGFYG+ DPNKR  SW +
Sbjct: 61  AEGRSGGLVMMWKDSKQVEIQTYSSNHIDSLIHVENDSPIRFTGFYGNVDPNKRQSSWNM 120

Query: 121 LERLNDNGNLPWILGGDFNEIICENEKEGGAQKAKKGIDDFRETLDNFCLLDPGFSRAKH 180
           L R++   N  WI+GGDFN ++ E EKEG  +KA   ++DFR  +D   ++D        
Sbjct: 121 LRRVSQTVNEKWIIGGDFNALLDEAEKEGRRRKATVLMEDFRSIVDELSMVDLKTDNGWF 180

Query: 181 TWRRGKTATSKVKERLNRFLINHDMHRSFQSIKVQNLSFNSSDHRPILATLESHGPKASR 240
           TW   K  T++VKERL+RFL++ +   SF  ++ + +  +SSDH  I    E   P+   
Sbjct: 181 TWVNNKEGTARVKERLDRFLMSANAVNSFSFLETRVIRQSSSDHDAISLDTEGRRPRDGL 240

The following BLAST results are available for this feature:

BLAST of Lag0017356 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4351405.1	1.0e-51	46.44	hypothetical protein F8388_001025, partial [Cannabis sativa]	[more]
XP_028075737.1	1.5e-50	42.17	uncharacterized protein LOC114277953 [Camellia sinensis]	[more]
KAG6649980.1	1.2e-49	41.56	hypothetical protein CIPAW_06G011600 [Carya illinoinensis]	[more]
XP_038697213.1	6.2e-49	41.39	uncharacterized protein LOC119994946 [Tripterygium wilfordii]	[more]
KAG4109659.1	1.4e-48	41.49	hypothetical protein ERO13_1Z049785v2, partial [Gossypium hirsutum]	[more]

BLAST of Lag0017356 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6DZ24	4.9e-52	46.44	CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_001025 P...	[more]
A0A5B6WXI9	1.1e-48	41.48	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_007399 PE=4 SV=1	[more]
A0A5B6WSX4	1.5e-48	43.67	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_006480 PE=4 SV=1	[more]
A0A803PPS5	9.6e-48	42.98	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A5D2GPG4	1.3e-47	40.25	Endo/exonuclease/phosphatase domain-containing protein OS=Gossypium darwinii OX=...	[more]

BLAST of Lag0017356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..230 e-value: 5.4E-38 score: 133.1
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 1..231
IPR005135	Endonuclease/exonuclease/phosphatase	PFAM	PF03372	Exo_endo_phos	coord: 6..139 e-value: 2.8E-9 score: 36.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..250
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 1..175
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 1..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017356.1	Lag0017356.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003824	catalytic activity