Lag0017341 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017341
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr5: 2468362 .. 2468751 (-)
RNA-Seq ExpressionLag0017341
SyntenyLag0017341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACAAAATTTGTTTCTGGTTCGACTCGTGGACTGATGTGGGCCCATTACAAGTTCATCCTCGGCTTTTTGCTCTATCCAGCAAGAAAACAATGTCAGTCTCGGGATGCTTGGGACTCTACTTCTTCTTCATGGAACCTTTATCCCAGAAGGCCGTTGTTAGACAGGGAGGTCTGCGCTCAAGAAGATTTGGTCTCCTCTTTCCCAATCCCTGCTCCTTTGGAAGGGGTGGATTCCTTGCTTTGGTCAAGCGATTCCAAAGGTTGTTTTTCCATCGTCTCAGCTAAGCTATTCTTTTGGTCATCTTCTTCTGAGGAGCGTCCTCAAGTGCATTCGAGTATTTTCTCCAACCTTTGGAAGGCCTCAATTCCAAAGAAGATTAATTAG

mRNA sequence

ATGGCAACAAAATTTGTTTCTGGTTCGACTCGTGGACTGATGTGGGCCCATTACAAGTTCATCCTCGGCTTTTTGCTCTATCCAGCAAGAAAACAATGTCAGTCTCGGGATGCTTGGGACTCTACTTCTTCTTCATGGAACCTTTATCCCAGAAGGCCGTTGTTAGACAGGGAGGTCTGCGCTCAAGAAGATTTGGTCTCCTCTTTCCCAATCCCTGCTCCTTTGGAAGGGGTGGATTCCTTGCTTTGGTCAAGCGATTCCAAAGGTTGTTTTTCCATCGTCTCAGCTAAGCTATTCTTTTGGTCATCTTCTTCTGAGGAGCGTCCTCAAGTGCATTCGAGTATTTTCTCCAACCTTTGGAAGGCCTCAATTCCAAAGAAGATTAATTAG

Coding sequence (CDS)

ATGGCAACAAAATTTGTTTCTGGTTCGACTCGTGGACTGATGTGGGCCCATTACAAGTTCATCCTCGGCTTTTTGCTCTATCCAGCAAGAAAACAATGTCAGTCTCGGGATGCTTGGGACTCTACTTCTTCTTCATGGAACCTTTATCCCAGAAGGCCGTTGTTAGACAGGGAGGTCTGCGCTCAAGAAGATTTGGTCTCCTCTTTCCCAATCCCTGCTCCTTTGGAAGGGGTGGATTCCTTGCTTTGGTCAAGCGATTCCAAAGGTTGTTTTTCCATCGTCTCAGCTAAGCTATTCTTTTGGTCATCTTCTTCTGAGGAGCGTCCTCAAGTGCATTCGAGTATTTTCTCCAACCTTTGGAAGGCCTCAATTCCAAAGAAGATTAATTAG

Protein sequence

MATKFVSGSTRGLMWAHYKFILGFLLYPARKQCQSRDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKKIN
Homology
BLAST of Lag0017341 vs. NCBI nr
Match: XP_031744692.1 (uncharacterized protein LOC116405125 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-08
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 39  WDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSAKL 98
           W++  + W+LYPRRPL   E    ED+  S P P P  G D+  W+ ++ G F++ S KL
Sbjct: 59  WNAEKADWDLYPRRPLRSVEEVLWEDMKVSLP-PLPDSGFDNPRWTLNNNGSFTVASIKL 118

Query: 99  FFWSSSSEERPQVHSSIFSNLWKASIPKK 128
               ++ +E  +    I++NLWK++IPK+
Sbjct: 119 ARPLNNQDETNEDDGEIYNNLWKSTIPKR 146

BLAST of Lag0017341 vs. NCBI nr
Match: KAA0037436.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 5.7e-06
Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 0

Query: 37  DAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSA 96
           + WD  ++ WNL+PRRPL DRE+    +L     I     G ++++W+ + KG ++  SA
Sbjct: 611 ELWDPNTNDWNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAASA 670

Query: 97  KLFFWSSSSEERPQVH---SSIFSNLWKASIPKK 128
           K    S    ERP  +    + +  LWK+ +PKK
Sbjct: 671 KRQLLS----ERPTPNLNERNFYETLWKSKLPKK 700

BLAST of Lag0017341 vs. NCBI nr
Match: TYK00226.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 5.7e-06
Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 0

Query: 37  DAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVSA 96
           + WD  ++ WNL+PRRPL DRE+    +L     I     G ++++W+ + KG ++  SA
Sbjct: 586 ELWDPNTNDWNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAASA 645

Query: 97  KLFFWSSSSEERPQVH---SSIFSNLWKASIPKK 128
           K    S    ERP  +    + +  LWK+ +PKK
Sbjct: 646 KRQLLS----ERPTPNLNERNFYETLWKSKLPKK 675

BLAST of Lag0017341 vs. NCBI nr
Match: KAA0067274.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-05
Identity = 28/92 (30.43%), Postives = 44/92 (47.83%), Query Frame = 0

Query: 36  RDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGCFSIVS 95
           ++ WD ++  WN+ PRRPL +RE    E +  S P      G+   LW       +S+ S
Sbjct: 267 KEVWDQSTDGWNINPRRPLNERENHIWESIKMSLPQIHSNRGISKPLWKPSDSNVYSVAS 326

Query: 96  AKLFFWSSSSEERPQVHSSIFSNLWKASIPKK 128
           AK   +  +S  R         +LW++ IP+K
Sbjct: 327 AKDLAFKETSIPRETNWEKELKHLWRSHIPQK 358

BLAST of Lag0017341 vs. NCBI nr
Match: KAA0067709.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 6.3e-05
Identity = 32/98 (32.65%), Postives = 47/98 (47.96%), Query Frame = 0

Query: 31  KQCQSRDAWDSTSSSWNLYPRRPLLDREVCAQEDLVSSFPIPAPLEGVDSLLWSSDSKGC 90
           K     D W++T   W+L PRR L D E     +L +S        G D+  W+  S G 
Sbjct: 611 KDSSINDMWNTTLMDWDLKPRRQLRDWEYPLWAELKNSLNANFCKNGRDTSTWNLSSDGF 670

Query: 91  FSIVSAKLFFWSSSSEERPQVHSSIFSNLWKASIPKKI 129
           +S+ S K     S        + + F+NLWK++IPKK+
Sbjct: 671 YSVASVKKAIHQSDQGVLAIPNHNTFTNLWKSTIPKKM 708

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031744692.12.7e-0837.08uncharacterized protein LOC116405125 [Cucumis sativus][more]
KAA0037436.15.7e-0634.04LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK00226.15.7e-0634.04LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0067274.14.8e-0530.43LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0067709.16.3e-0532.65LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017341.1Lag0017341.1mRNA