Lag0017325 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017325
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 2169596 .. 2172790 (-)
RNA-Seq Expression	Lag0017325
Synteny	Lag0017325

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCAAAGGCGATTTTAGAAGGGATTAAATCGATTGTCAATACCCGTGAGAATCTCCAAATCCCCCTGGAGATGGAATCGGATTCCATGGAAACGGTGAAAGTCCTGACGGGGAAGTCAGAAGACTGGTCGGAGATGAGTTTGTTCGTCGACGAGATTCAGGCTCTCTCCTTGCACTTCAAATCCATCGCTTTCCTTCATTGCAACAGAGAAGGAAATCGATTAGCGCACTTAGTAGCGAGAAAGCCAATTGATTTCGATTTTGGTTGTAATTAGGGACCTTCCCTGAATCTGATATGGAGCGTGTTTTTTGGGCTCCAGAACTTCCTGATTTTGTTTTCCCTCTTCTTAATGAGGGTGGTTGTGGTGTTGGTTAGTCTTTAATGAATTTTCTATTTCGAGGAAAAAAAAACTCCTCTCTCTCTCCATTAACTCACTCAAAAAAATCAGTAAATACGACTGAAGTGTGAGACCATTATATATATACTTTTTGAATTTTGCAACAAAAATCTAATTATGAAAAATACAAGAATTTTAAGTTGATGCTCAAATGAAGTACATGCTTACAACTAGTTGATTTGTGAATAGTATACATAGATGGAGTCATTAATTTGTGCATTGCAGTGTTACAAACTTATTTGGAAAATTTTATTTTATTGAAATTAATAAGTTTAGGAAGATTTTTACTTTTTTTTTGTTAAATTAGTGGGTAAATTAGCGGAAATTGAATCGAGAGTAAAAATTGCTACACTTAGTTTAGGGGTCTAATTTGATGAAATTGAAAGTTTAGAGTCCAAATTGACACAACCTAACAAATGTTAGTAGGAAAACGTCTACAAACAAATCATACAACTTCTAGTGCAATTATCGTTTTGGTGCATGTATATTTTGGATTTCATTTTATTTTAGTATTTGTACTTTCAAATGTTAAATTTCAGTTTATGTACTTTGAATAAAGCTAAAAATTGATCTCTACGATTGGTTTATCGTTAACTTTTCTTTAAAAAAAAAATTTATGTCATAGGGGGCTTGTAGCAGCCGGCTTTGAAATAAAAAAAAATAAAAAAAAAAGAGAGAATGGGGAAGTGGCTGCCGGTCAAAAGGGAAAAAAAAAAGGGGGGAAACTTTCCCCCCAATTTTTCGGTCAAAGTGACCTTTAAAAAAAAAAAAAAAAAGAAATTCAGATTCTCTCTCTCCCTCACGCTCCCTCTTTCTATCTCACGACCCTCTCCCTCTCTCGGCTTCATCTCCCTCGCAGCTCTCTCTCTCTCTCCCTCACGCTCTCTCTCTCCCTCAACCTCCTCCGTCGCACGCCGACCATCGACGCCGCCGCTTGCCGACTGTAAGCTCCCTCTCTCTTCCATTTTTCTCTTGTATCTCCCTCCCTTTTCCATCTCTCTCTCTCTCTAACTCGGTTCACTCCCCCTCCCTCGCAGCTCTCTCTCCCGCGTTGCTACCATGCCGTCGGCGCCTCCTCTATAGCAGACCGTCGCACGCCGCGCCGCCCCTCCGTGAGCTCTCTCTCTTTCTCCCTTCTCCGTCTCATGTTGTAGCAGCGTGGGTGACGTGTTTAGCATTGTTTTCCGACAGCAACACTGTAGGCGCAGACAGCAACAAGGAGAGACCGTTTTTCTGCATTTTCGGCTGTTTTATGTGAGTTTCCGCATTGGGTAAGTTGGTTTGAGGCTTATGTGGGTTAGTTCTTGCATTTAAACGATTACTCATTCACTTCTTCTCCCGTTCAGCAAGCTTACTCATTCAATTCCGACGATTCAAGCAGTGGGTCTTCAAGTTTCAGCGTGTTTGAGCAATTCCGACTTTGGGTAAGTGAACTAAGTTAAGTTTTGAATGATTTAATTGTGTTAAAGGAGTACCCAATGATTTTGGCATGTGGTTGCAAGGTTCTCTTAGCTTTTGGGGATTTAATCGTCGGTTTGGAGCGTTGTTGGATCATTGGACAGCAAACGGTGTTTCTGTTTTGGGTGAGTTTTGGATGTTAATTTACCCCCAAATTTAAATGGGTTCTTAGTTGAATGCTTGGATTAGAGTCCCTATTTAATTAGAGATTCTTTCCTTGTTGTAGTTGCTTAAGAACCTTGGAGTTAAGGAATTTCTTGAAGGTTAATCAAATATCTCCTTCACTAAGGTAAGTAGCCGTTGGAATAAATTCTCTGCTTTAAACTCATTTAATTTGAGTATGGTTTACAATAGCATGGGTTGGATTTAATCCTTAAATTTCCCCTTGGAATTTAAATAGCTAATTGGATTCAAGTTCCATGTTTTAAGTGCATTGTATGGTAGCTGAGCATGGTAAGTAACATGCTGCATTATGGAATGAAATGTTTATGTTTTGAATGATTTGTTTACTCCTGGCATGAGAATGTGTATAAGTGGTTCGTATTGAGACTGAGGTGATATGTTGCGTTAATTTCAAGAATATGGCTACTACATGTATAATTGTGTTGTGTGATAGAAGCGAGTGTATGACTGATGTGTATTTTATAGCTGACTGGCATTGTTGTGGGCAACTGGGAGTTTGTGCTTTTCTCCGCTTAGGAGGGTTGCCGTTTAAAAATAGCAAGAGTTAAGGGGTCCTAAAGGGTAAAGGATTAAGAAAGGGAAAAGGATAGGCTAGTTGCCTCGATTGTGGGCAGTGTCAATTAAACACCTAGGACTGAGATGTAATAGACTGAAATGAGGGGCTTAATGGGCGGAACTTGGCTTCGCAGTCTAGGTGTCATTTACTAACTGTGGAAGTTAAATTTCCGACTTAAACCCATGAACGCCCCACTAGTGAAATGGTAGTTCAGAGTGCTACGCGCCCATTAGTGCCTTGAGGGACGAGACTTAGCTCCACTGACTGGGTGTCATCTACCATCAGTAGGAGTAGAGACCTCCCACAACTCCCACTTGTGCACTATCAGTGAGTTGGCAAACTTATATGTATATAGGTGTACTAATTGAACACGAGACCCGAACCACAGATAAATGAAATGAAATGAAATGAATGAGAACGAGATGACCTAACCCTTAGGCCCTTAACTCGAATAAGATATTAAAACTTTTATTGCTACTTACTGAGTATTTTCTTAAATACTCATTCTTTTCCCTTACATACAACTGCAGGTAGAGGTAAAGGTGTACAGAACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAG

mRNA sequence

ATGGAATCAAAGGCGATTTTAGAAGGGATTAAATCGATTGTCAATACCCGTGAGAATCTCCAAATCCCCCTGGAGATGGAATCGGATTCCATGGAAACGGTGAAAGTCCTGACGGGGAAGTCAGAAGACTGGTCGGAGATGAGTTTGTTCGTCGACGAGATTCAGGCTCTCTCCTTGCACTTCAAATCCATCGCTTTCCTTCATTGCAACAGAGAAGGAAATCGATTAGCGCACTTAGTAGCGAGAAAGCCAATTGATTTCGATTTTGGTTCTCTCTCTCCCGCGTTGCTACCATGCCGTCGGCGCCTCCTCTATAGCAGACCGTCGCACGCCGCGCCGCCCCTCCGTGAGCTCTCTCTCTTTCTCCCTTCTCCGTCTCATGTTGTAGCAGCGTGGGTGACGTGTTTAGCATTGTTTTCCGACAGCAACACTCAAGCTTACTCATTCAATTCCGACGATTCAAGCAGTGGGTCTTCAAGTTTCAGCGTGTTTGAGCAATTCCGACTTTGGGTTCTCTTAGCTTTTGGGGATTTAATCGTCGGTTTGGAGCGTTGTTGGATCATTGGACAGCAAACGGTGTTTCTGTTTTGGGTAGAGGTAAAGGTGTACAGAACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAG

Coding sequence (CDS)

ATGGAATCAAAGGCGATTTTAGAAGGGATTAAATCGATTGTCAATACCCGTGAGAATCTCCAAATCCCCCTGGAGATGGAATCGGATTCCATGGAAACGGTGAAAGTCCTGACGGGGAAGTCAGAAGACTGGTCGGAGATGAGTTTGTTCGTCGACGAGATTCAGGCTCTCTCCTTGCACTTCAAATCCATCGCTTTCCTTCATTGCAACAGAGAAGGAAATCGATTAGCGCACTTAGTAGCGAGAAAGCCAATTGATTTCGATTTTGGTTCTCTCTCTCCCGCGTTGCTACCATGCCGTCGGCGCCTCCTCTATAGCAGACCGTCGCACGCCGCGCCGCCCCTCCGTGAGCTCTCTCTCTTTCTCCCTTCTCCGTCTCATGTTGTAGCAGCGTGGGTGACGTGTTTAGCATTGTTTTCCGACAGCAACACTCAAGCTTACTCATTCAATTCCGACGATTCAAGCAGTGGGTCTTCAAGTTTCAGCGTGTTTGAGCAATTCCGACTTTGGGTTCTCTTAGCTTTTGGGGATTTAATCGTCGGTTTGGAGCGTTGTTGGATCATTGGACAGCAAACGGTGTTTCTGTTTTGGGTAGAGGTAAAGGTGTACAGAACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGGATAG

Protein sequence

MESKAILEGIKSIVNTRENLQIPLEMESDSMETVKVLTGKSEDWSEMSLFVDEIQALSLHFKSIAFLHCNREGNRLAHLVARKPIDFDFGSLSPALLPCRRRLLYSRPSHAAPPLRELSLFLPSPSHVVAAWVTCLALFSDSNTQAYSFNSDDSSSGSSSFSVFEQFRLWVLLAFGDLIVGLERCWIIGQQTVFLFWVEVKVYRTRDGELLSHGSPLG

Homology

[Close]

BLAST of Lag0017325 vs. NCBI nr
Match: KAF8391778.1 (hypothetical protein HHK36_022012 [Tetracentron sinense])

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-05
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 3   SKAILEGIKSIVNTRENLQIPLE-------MESDSMETVKVLTGKSEDWSEMSLFVDEIQ 62
           S A++E I +    RE L+  LE       +ESDS+ T+  LT + E+ S  SL +D+++
Sbjct: 866 SAAVIEAIAA----REGLKFALELGIQEVILESDSINTIHALTSQEENSSFESLVLDDVK 925

Query: 63  ALSLHFKSIAFLHCNREGNRLAHLVARKPI 86
            L L F   +F H +REGN +AH +ARK +
Sbjct: 926 TLRLSFHHCSFSHVHREGNSVAHCLARKAL 951

The following BLAST results are available for this feature:

BLAST of Lag0017325 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8391778.1	6.2e-05	38.89	hypothetical protein HHK36_022012 [Tetracentron sinense]	[more]

BLAST of Lag0017325 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017325 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017325 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..88 e-value: 1.9E-7 score: 33.1
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..82 e-value: 1.0E-11 score: 44.7
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 1..82 e-value: 1.02462E-12 score: 60.7908
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017325.1	Lag0017325.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity