Lag0017316 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017316
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Arf-GAP domain-containing protein
Location	chr5: 2073588 .. 2074232 (-)
RNA-Seq Expression	Lag0017316
Synteny	Lag0017316

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCGACAGCTTCTCCGACAAGAACCTCGTCTTCAGGAAACTCAAGGCCAAGTCCGAAAACAAGGTATTCCTTTTTTTCACCACGTATTTCCGTTACTCATTCGAATTCCTCTCGATATTGTGATTCCTCTTTCCGATCTGTGTGCTTCTTGTCGAGATCTCCGATTTTGCGTTCTAACGGAAGACCCACTTCGTCGGCTGTGGTTTTTTTTCAGATGTGTTTTGATTGCAATGCTAAGAATCCGAATTGGGCTTCTGTTACCTATGGGATCTTCCTCTGTATTGATTGCTCCGCCGTGCATCGCAGCCTTGGCGTCCATGTTAGCTTCGTCAGGTGGTTTTTATATTTGGGTTTTGATTTCATCGCTCTCTAGTTTTGATTTGTGGCTCTGAATTGACCTTCCTTGACTCGTTTCTATATGTTCGTTTTGCTAATAGAGTTTGTGGAGTCATTAGAAGTGCATTGCTTGTGTCTTATTCTTATGCCTCTTCCATCTGTTTAAGCCATTTTAGTTCAACCCTGCACTGCGCTGTGTTACTCTCTAACATGCACTTGTGTTTCAGTGGCATGTCCGGAATGTTCTTTGAGATGGGTCCATGTAAATTCATTCAACCTTGTATCTCATTTGATGGCCATTAA

mRNA sequence

ATGGCGTCCGACAGCTTCTCCGACAAGAACCTCGTCTTCAGGAAACTCAAGGCCAAGTCCGAAAACAAGATGTGTTTTGATTGCAATGCTAAGAATCCGAATTGGGCTTCTGTTACCTATGGGATCTTCCTCTGTATTGATTGCTCCGCCGTGCATCGCAGCCTTGGCGTCCATGTTAGCTTCGTCAGAGTTTGTGGAGTCATTAGAAGTGCATTGCTTGTGTCTTATTCTTATGCCTCTTCCATCTGTTTAAGCCATTTTAGTTCAACCCTGCACTGCGCTGTGTTACTCTCTAACATGCACTTGTGTTTCAGTGGCATGTCCGGAATGTTCTTTGAGATGGGTCCATGTAAATTCATTCAACCTTGTATCTCATTTGATGGCCATTAA

Coding sequence (CDS)

ATGGCGTCCGACAGCTTCTCCGACAAGAACCTCGTCTTCAGGAAACTCAAGGCCAAGTCCGAAAACAAGATGTGTTTTGATTGCAATGCTAAGAATCCGAATTGGGCTTCTGTTACCTATGGGATCTTCCTCTGTATTGATTGCTCCGCCGTGCATCGCAGCCTTGGCGTCCATGTTAGCTTCGTCAGAGTTTGTGGAGTCATTAGAAGTGCATTGCTTGTGTCTTATTCTTATGCCTCTTCCATCTGTTTAAGCCATTTTAGTTCAACCCTGCACTGCGCTGTGTTACTCTCTAACATGCACTTGTGTTTCAGTGGCATGTCCGGAATGTTCTTTGAGATGGGTCCATGTAAATTCATTCAACCTTGTATCTCATTTGATGGCCATTAA

Protein sequence

MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVSFVRVCGVIRSALLVSYSYASSICLSHFSSTLHCAVLLSNMHLCFSGMSGMFFEMGPCKFIQPCISFDGH

Homology

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BLAST of Lag0017316 vs. NCBI nr
Match: XP_022145353.1 (probable ADP-ribosylation factor GTPase-activating protein AGD8 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVS 60
          MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVS
Sbjct: 1  MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVS 60

Query: 61 FVR 64
          FVR
Sbjct: 61 FVR 63

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BLAST of Lag0017316 vs. NCBI nr
Match: XP_008448682.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-27
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVS 60
          MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNP WASVTYGIFLCIDCSAVHRSLGVHVS
Sbjct: 1  MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVS 60

Query: 61 FVR 64
          FVR
Sbjct: 61 FVR 63

[Close]

BLAST of Lag0017316 vs. NCBI nr
Match: XP_038905305.1 (probable ADP-ribosylation factor GTPase-activating protein AGD8 [Benincasa hispida])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVS 60
          MASDSFSDKNLVFRKLKAKS+NKMCFDCNAKNP WASVTYGIFLCIDCSAVHRSLGVHVS
Sbjct: 1  MASDSFSDKNLVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVS 60

Query: 61 FVR 64
          FVR
Sbjct: 61 FVR 63

[Close]

BLAST of Lag0017316 vs. NCBI nr
Match: KAG7028269.1 (putative ADP-ribosylation factor GTPase-activating protein AGD8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 3.8e-26
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1   MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVS 60
           MASD FSDKN+VFRKLKAKSENKMCFDCNAKNP WASVTYGIFLCIDCSAVHRSLGVHVS
Sbjct: 47  MASDGFSDKNVVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVS 106

Query: 61  FVR 64
           FVR
Sbjct: 107 FVR 109

[Close]

BLAST of Lag0017316 vs. NCBI nr
Match: XP_022946900.1 (probable ADP-ribosylation factor GTPase-activating protein AGD8 [Cucurbita moschata] >KAG6596733.1 putative ADP-ribosylation factor GTPase-activating protein AGD8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.6 bits (322), Expect = 3.8e-26
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVS 60
          MASD FSDKN+VFRKLKAKSENKMCFDCNAKNP WASVTYGIFLCIDCSAVHRSLGVHVS
Sbjct: 1  MASDGFSDKNVVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVS 60

Query: 61 FVR 64
          FVR
Sbjct: 61 FVR 63

[Close]

BLAST of Lag0017316 vs. ExPASy Swiss-Prot
Match: Q9FIQ0 (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana OX=3702 GN=AGD9 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-25
Identity = 51/63 (80.95%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVS 60
          MA+++ +DKN+VFRKLK+KSENK+CFDC+AKNP WASV YGIFLCIDCSAVHRSLGVH+S
Sbjct: 1  MATENLTDKNVVFRKLKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHIS 60

Query: 61 FVR 64
          FVR
Sbjct: 61 FVR 63

[Close]

BLAST of Lag0017316 vs. ExPASy Swiss-Prot
Match: O82171 (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana OX=3702 GN=AGD10 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-25
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVS 60
          MAS++ +DK  VF+KLKAKS+NK+CFDCNAKNP WASVTYGIFLCIDCSAVHRSLGVH+S
Sbjct: 1  MASENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS 60

Query: 61 FVR 64
          FVR
Sbjct: 61 FVR 63

[Close]

BLAST of Lag0017316 vs. ExPASy Swiss-Prot
Match: Q8H100 (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana OX=3702 GN=AGD8 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 49/62 (79.03%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 2  ASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVSF 61
          ++D+ +DKN+VFRKLK+KSENK+CFDC+AKNP WASVTYGIFLCIDCSA HR+LGVH+SF
Sbjct: 5  SADNLTDKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISF 64

Query: 62 VR 64
          VR
Sbjct: 65 VR 66

[Close]

BLAST of Lag0017316 vs. ExPASy Swiss-Prot
Match: Q99K28 (ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus OX=10090 GN=Arfgap2 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.1e-18
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 2  ASDSFSDKNLVFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVSF 61
          AS S ++   +F++L+A   NK CFDC AK+P+WAS+TYG+FLCIDCS VHRSLGVH+SF
Sbjct: 3  ASPSKTEIQTIFKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSF 62

Query: 62 VR 64
          +R
Sbjct: 63 IR 64

[Close]

BLAST of Lag0017316 vs. ExPASy Swiss-Prot
Match: Q8N6H7 (ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens OX=9606 GN=ARFGAP2 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.8e-18
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 12 VFRKLKAKSENKMCFDCNAKNPNWASVTYGIFLCIDCSAVHRSLGVHVSFVR 64
          +F++L+A   NK CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+R
Sbjct: 13 LFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIR 64

The following BLAST results are available for this feature:

BLAST of Lag0017316 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145353.1	1.2e-27	100.00	probable ADP-ribosylation factor GTPase-activating protein AGD8 [Momordica chara...	[more]
XP_008448682.1	5.8e-27	98.41	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Cucu...	[more]
XP_038905305.1	1.3e-26	96.83	probable ADP-ribosylation factor GTPase-activating protein AGD8 [Benincasa hispi...	[more]
KAG7028269.1	3.8e-26	95.24	putative ADP-ribosylation factor GTPase-activating protein AGD8, partial [Cucurb...	[more]
XP_022946900.1	3.8e-26	95.24	probable ADP-ribosylation factor GTPase-activating protein AGD8 [Cucurbita mosch...	[more]

BLAST of Lag0017316 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIQ0	4.3e-25	80.95	Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis t...	[more]
O82171	5.7e-25	82.54	ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana ...	[more]
Q8H100	1.3e-24	79.03	Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis t...	[more]
Q99K28	5.1e-18	62.90	ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus OX=10090 GN=...	[more]
Q8N6H7	8.8e-18	71.15	ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens OX=9606 GN=A...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001164	Arf GTPase activating protein	PRINTS	PR00405	REVINTRACTNG	coord: 22..41 score: 52.59 coord: 41..58 score: 60.15
IPR001164	Arf GTPase activating protein	SMART	SM00105	arf_gap_3	coord: 10..124 e-value: 1.3E-7 score: 41.3
IPR001164	Arf GTPase activating protein	PFAM	PF01412	ArfGap	coord: 12..65 e-value: 2.6E-22 score: 79.1
IPR001164	Arf GTPase activating protein	PROSITE	PS50115	ARFGAP	coord: 10..77 score: 20.006502
IPR038508	ArfGAP domain superfamily	GENE3D	1.10.220.150	Arf GTPase activating protein	coord: 1..99 e-value: 8.3E-27 score: 95.8
None	No IPR available	PANTHER	PTHR45686	ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED	coord: 2..64
None	No IPR available	PANTHER	PTHR45686:SF4	ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H	coord: 2..64
IPR037278	ARFGAP/RecO-like zinc finger	SUPERFAMILY	57863	ArfGap/RecO-like zinc finger	coord: 12..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017316.1	Lag0017316.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048205	COPI coating of Golgi vesicle
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0000139	Golgi membrane
molecular_function	GO:0005096	GTPase activator activity