Lag0017300 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017300
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 1967769 .. 1968594 (-)
RNA-Seq Expression	Lag0017300
Synteny	Lag0017300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCATAATGGGTATCTAAAGGATTTCGTCGGTGAGCCCAGGGCCGAGGCCGACAAGGGATGGTCGAGGCCGAGGTCGACCAAAGATGGCCAAGACAAAGAAGAACCCCTACGAGAGATCAGAACCATCTTTGGAGGACCAGCTGGAGGTGGTCCAAGCAAGAAGAGAAAAGCTATTGCCATGGAAGTAAGGTTCGAACCAGAATATCGAGGTATGTACTCTGTCCATTTAGCAAAGGCACACCCCCTTCGGAGTTCACTATGGCTGAGGCAGCGAGCATTCATCAGCCACACATATTGATGCCCTAGTGGTCACTCTGATTGTAGCCAATGTGAAAATCCATCAGATCCTAATTGATGGAGGAAGCTCGGCTGATGTCTTTTCTCTAACGGCCTTTAAAGCAATGCAGTTAGAGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGGTTTGGAGGAGAGATAGTGACCTTTGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGATAGAATGTAATGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTAAGCCTACAATGCAATCCTAGGAAGGCCAACCTTGCATGAAATGGAGGTCATAGCTTCAACTTACCATCAGTTGCTGAAGTTTCCAACTCCGAATGGTGTGGAAGTTGTCAAATGAGAGCAGAAGGAATCACGAGAATGTTACGAGACCGTGCTGAAAGCAGTTAAGCCACAGAGGCCAAAGGCCGACCAGAGGATAGGCCGAGGTCGAGCAGAGCACAGTTCCACCAACTCTGAATCTGAACTTATGGAGTTTTAG

mRNA sequence

ATGATCCATAATGGGTATCTAAAGGATTTCGTCGGTGAGCCCAGGGCCGAGGCCGACAAGGGATGGTCGAGGCCGAGGTCGACCAAAGATGGCCAAGACAAAGAAGAACCCCTACGAGAGATCAGAACCATCTTTGGAGGACCAGCTGGAGGTGGTCCAAGCAAGAAGAGAAAAGCTATTGCCATGGAAGTAAGGTTCGAACCAGAATATCGAGCCAATGTGAAAATCCATCAGATCCTAATTGATGGAGGAAGCTCGGCTGATGTCTTTTCTCTAACGGCCTTTAAAGCAATGCAGTTAGAGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGGTTTGGAGGAGAGATAGTGACCTTTGAAGTTAAGCCACAGAGGCCAAAGGCCGACCAGAGGATAGGCCGAGGTCGAGCAGAGCACAGTTCCACCAACTCTGAATCTGAACTTATGGAGTTTTAG

Coding sequence (CDS)

ATGATCCATAATGGGTATCTAAAGGATTTCGTCGGTGAGCCCAGGGCCGAGGCCGACAAGGGATGGTCGAGGCCGAGGTCGACCAAAGATGGCCAAGACAAAGAAGAACCCCTACGAGAGATCAGAACCATCTTTGGAGGACCAGCTGGAGGTGGTCCAAGCAAGAAGAGAAAAGCTATTGCCATGGAAGTAAGGTTCGAACCAGAATATCGAGCCAATGTGAAAATCCATCAGATCCTAATTGATGGAGGAAGCTCGGCTGATGTCTTTTCTCTAACGGCCTTTAAAGCAATGCAGTTAGAGAGGGAACTCTTAAAGCCAAGCCTTACCCCACTTGTAGGGTTTGGAGGAGAGATAGTGACCTTTGAAGTTAAGCCACAGAGGCCAAAGGCCGACCAGAGGATAGGCCGAGGTCGAGCAGAGCACAGTTCCACCAACTCTGAATCTGAACTTATGGAGTTTTAG

Protein sequence

MIHNGYLKDFVGEPRAEADKGWSRPRSTKDGQDKEEPLREIRTIFGGPAGGGPSKKRKAIAMEVRFEPEYRANVKIHQILIDGGSSADVFSLTAFKAMQLERELLKPSLTPLVGFGGEIVTFEVKPQRPKADQRIGRGRAEHSSTNSESELMEF

Homology

[Close]

BLAST of Lag0017300 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-20
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 1   MIHNGYLKDFVGEPRAEADKGWSRPRSTKDGQDKEEPLREIRTIFGGPAGGGPSKKRKAI 60
           +I  GYLK++V EP+A           T++G+  + P REIRTI GGP      +KRKA 
Sbjct: 51  LIRRGYLKEYVEEPKA-----------TQNGESDKSPAREIRTIMGGPIERESGRKRKAD 110

Query: 61  AMEVRFEPEYR--ANVKIHQILIDGGSSADVFSLTAFKAMQLERELLKPSLTPLVGFGGE 120
             E R   E    ANVK+H++L+DGGS AD+ S TA+KAM L  ++LK S  PLVGFGGE
Sbjct: 111 VREARTGREQNEIANVKVHRVLVDGGSLADILSWTAYKAMDLGEKVLKSSPAPLVGFGGE 170

Query: 121 IVTFEVKPQRP 130
            V  E + + P
Sbjct: 171 RVIPEGRIEXP 170

[Close]

BLAST of Lag0017300 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-16
Identity = 61/167 (36.53%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 1   MIHNGYLKDFVGEPRAEADKGWSRPRSTKDGQDKEEPLREIRTIFGGPAGGGPSKKRKAI 60
           +I  GYLK++V EP+A           T++G+  + P REIRTI GGP      +KRKA 
Sbjct: 461 LIRRGYLKEYVEEPKA-----------TQNGESDKSPAREIRTIMGGPIERESGRKRKAD 520

Query: 61  AMEVRFEPEYR--------------------------------------ANVKIHQILID 120
             E R   E                                        ANVK+H++L+D
Sbjct: 521 VREARTSREQNEVYHAYTTNRPVTIEFSEDEATHLLHPHNDALVIXLKIANVKVHRVLVD 580

Query: 121 GGSSADVFSLTAFKAMQLERELLKPSLTPLVGFGGEIVTFEVKPQRP 130
           GGSSAD+ S TA+KAM L  ++LK S  PLVGFG E V  E + + P
Sbjct: 581 GGSSADIJSWTAYKAMDLXEKVLKXSPAPLVGFGXERVIPEGRIELP 616

[Close]

BLAST of Lag0017300 vs. NCBI nr
Match: XP_022158093.1 (uncharacterized protein LOC111024662 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-15
Identity = 58/167 (34.73%), Postives = 78/167 (46.71%), Query Frame = 0


Query: 1   MIHNGYLKDFVGEPRAEADKGWSRPRSTKDGQDKEEPLREIRTIFGGPAGGGPSKKRKAI 60
           +I  GYLK++V +P+A          +     D + P++EI+TIFGGP      KKRKA 
Sbjct: 37  LIRRGYLKEYVEDPKA----------TLNSENDDKSPVKEIQTIFGGPTERELGKKRKAS 96

Query: 61  AMEVRFEPEY--------------------------------------RANVKIHQILID 120
             E R  P Y                                        N K+H+IL+D
Sbjct: 97  MQEARASPGYCKVYHASFTGQPSKIKFSEDETTRLFHPHNDALVITLKITNTKVHRILVD 156

Query: 121 GGSSADVFSLTAFKAMQLERELLKPSLTPLVGFGGEIVTFEVKPQRP 130
           GGSS  + SLTA+KAM L  + LK +L PLVGFGGE V  + + + P
Sbjct: 157 GGSSTGIISLTAYKAMDLGEKALKSNLAPLVGFGGERVIQKCRIKLP 193

[Close]

BLAST of Lag0017300 vs. NCBI nr
Match: XP_022158828.1 (uncharacterized protein LOC111025292 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-13
Identity = 56/158 (35.44%), Postives = 76/158 (48.10%), Query Frame = 0


Query: 1   MIHNGYLKDFVGEPRAEADKGWSRPRSTKDGQDKEEPLREIRTIFGGPAGGGPSKKRKAI 60
           +   GYLK++V + +A           T++ ++ + P REIRTI GGP      +KRKA 
Sbjct: 37  LFRRGYLKEYVEDSKA-----------TQNSENDKSPAREIRTIMGGPIERESGRKRKAD 96

Query: 61  AME---------------------VRFEPEYR-----------------ANVKIHQILID 120
             E                     + F  +                   AN K+H+IL+D
Sbjct: 97  VREAKASLGQNEVYHAYIMNQSVAIEFSEDEATHLLHPHNDALVITLKIANXKVHRILVD 156

[Close]

BLAST of Lag0017300 vs. NCBI nr
Match: XP_022158827.1 (uncharacterized protein LOC111025291 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-13
Identity = 56/158 (35.44%), Postives = 76/158 (48.10%), Query Frame = 0


Query: 1   MIHNGYLKDFVGEPRAEADKGWSRPRSTKDGQDKEEPLREIRTIFGGPAGGGPSKKRKAI 60
           +   GYLK++V + +A           T++ ++ + P REIRTI GGP      +KRKA 
Sbjct: 37  LFRRGYLKEYVEDSKA-----------TQNSENDKSPAREIRTIMGGPIERESGRKRKAD 96

Query: 61  AME---------------------VRFEPEYR-----------------ANVKIHQILID 120
             E                     + F  +                   AN K+H+IL+D
Sbjct: 97  VREAKASLGQNEVYHAYIMNQSVAIEFSEDEATHLLHPHNDALVITLKIANXKVHRILVD 156

The following BLAST results are available for this feature:

BLAST of Lag0017300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144467.1	2.2e-20	46.56	uncharacterized protein LOC111014147 [Momordica charantia]	[more]
XP_022158830.1	2.5e-16	36.53	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022158093.1	2.1e-15	34.73	uncharacterized protein LOC111024662 [Momordica charantia]	[more]
XP_022158828.1	1.2e-13	35.44	uncharacterized protein LOC111025292 [Momordica charantia]	[more]
XP_022158827.1	1.2e-13	35.44	uncharacterized protein LOC111025291 [Momordica charantia]	[more]

BLAST of Lag0017300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017300.1	Lag0017300.1	mRNA