Lag0017296 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017296
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 1927249 .. 1927856 (-)
RNA-Seq Expression	Lag0017296
Synteny	Lag0017296

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAAGGGAGTACTTGGGAAGGCATTTTGCAAATGTGGAGAAGGTTGGAAATGTGAGATCAAAAGAACACAAGGCCCTGATGCAGGGAAGACCTTTGTTAATTGTGGCAACAACTGTGCATGTATAATGTAAACCTGACTCCGTCCTACATTGTTCATCTCGTTAAATCATCATTATTAAACCTAAAAGTTTTAAAATTTGTATATATAAGTACTTGAATTTCTATGTGGAGTCATTAAAGAAAATGACAATTTGAATCTCGTGAGCCTAACACATATTACATGACCCTAAATTTCACAATTCGCGGATTTATTAAAATCGTGAACTAAAGAGTTGAGATAAATCTAGTGTCAATTAGGCTCTTATTGTTGCCTTTAATTTCTTAACAACCATTGGATTTTGAACACAATGTTTGAATCAGAGAAGGGACAACTGAAGGGGCAGTGAAGTTGCAGCAATTGGCAGCTGAGGCCAATTTTGAAGGAGCATCTTGTGAGTGTGGAGAAGGTTGGAGCTGCACCATTTCCAAGATTGAAGGCCCTCAAGAGGCCAAGCCCTTTGCTAAATGTGATGGAGATTGCTCTTGCATCACTGTTGCTTAA

mRNA sequence

ATGGAAGAAAAGGGAGTACTTGGGAAGGCATTTTGCAAATGTGGAGAAGGTTGGAAATGTGAGATCAAAAGAACACAAGGCCCTGATGCAGGGAAGACCTTTGTTAATTGTGGCAACAACTGTGCATGTATAATAGAAGGGACAACTGAAGGGGCAGTGAAGTTGCAGCAATTGGCAGCTGAGGCCAATTTTGAAGGAGCATCTTGTGAGTGTGGAGAAGGTTGGAGCTGCACCATTTCCAAGATTGAAGGCCCTCAAGAGGCCAAGCCCTTTGCTAAATGTGATGGAGATTGCTCTTGCATCACTGTTGCTTAA

Coding sequence (CDS)

ATGGAAGAAAAGGGAGTACTTGGGAAGGCATTTTGCAAATGTGGAGAAGGTTGGAAATGTGAGATCAAAAGAACACAAGGCCCTGATGCAGGGAAGACCTTTGTTAATTGTGGCAACAACTGTGCATGTATAATAGAAGGGACAACTGAAGGGGCAGTGAAGTTGCAGCAATTGGCAGCTGAGGCCAATTTTGAAGGAGCATCTTGTGAGTGTGGAGAAGGTTGGAGCTGCACCATTTCCAAGATTGAAGGCCCTCAAGAGGCCAAGCCCTTTGCTAAATGTGATGGAGATTGCTCTTGCATCACTGTTGCTTAA

Protein sequence

MEEKGVLGKAFCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCACIIEGTTEGAVKLQQLAAEANFEGASCECGEGWSCTISKIEGPQEAKPFAKCDGDCSCITVA

Homology

[Close]

BLAST of Lag0017296 vs. NCBI nr
Match: XP_023005604.1 (uncharacterized protein LOC111498543 [Cucurbita maxima])

HSP 1 Score: 210.7 bits (535), Expect = 6.1e-51
Identity = 93/102 (91.18%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 3   EKGVLGKAFCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCACIIEGTTEGAVKLQQLAAEA 62
           EKGVLGKA+CKCGEGWKCEIKRTQGPDAGKTFVNCGNNC CIIEGT EGAVKLQQLA E 
Sbjct: 17  EKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCIIEGTAEGAVKLQQLAGEG 76

Query: 63  NFEGASCECGEGWSCTISKIEGPQEAKPFAKCDGDCSCITVA 105
            FEGASCECGEGWSC+ISKIEGPQ+AKPFAKC GDCSCITVA
Sbjct: 77  GFEGASCECGEGWSCSISKIEGPQDAKPFAKCAGDCSCITVA 118

[Close]

BLAST of Lag0017296 vs. NCBI nr
Match: KAG6596727.1 (hypothetical protein SDJN03_09907, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.6 bits (527), Expect = 5.2e-50
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 3   EKGVLGKAFCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCACIIEGTTEGAVKLQQLAAEA 62
           EKGVLGKA+CKCGEGWKCEIKRTQGPDAGKTFVNCGNNC CIIEGT EGAVKLQQLA E 
Sbjct: 17  EKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCIIEGTAEGAVKLQQLAGEG 76

Query: 63  NFEGASCECGEGWSCTISKIEGPQEAKPFAKCDGDCSCITVA 105
            FEGASCECGEGWSCTISKIEGPQ+ K FAKC GDCSCITVA
Sbjct: 77  GFEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCITVA 118

[Close]

BLAST of Lag0017296 vs. NCBI nr
Match: XP_022924877.1 (uncharacterized protein LOC111432244 [Cucurbita moschata])

HSP 1 Score: 207.6 bits (527), Expect = 5.2e-50
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 3   EKGVLGKAFCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCACIIEGTTEGAVKLQQLAAEA 62
           EKGVLGKA+CKCGEGWKCEIKRTQGPDAGKTFVNCGNNC CIIEGT EGAVKLQQLA E 
Sbjct: 17  EKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCIIEGTAEGAVKLQQLAGEG 76

Query: 63  NFEGASCECGEGWSCTISKIEGPQEAKPFAKCDGDCSCITVA 105
            FEGASCECGEGWSCTISKIEGPQ+ K FAKC GDCSCITVA
Sbjct: 77  GFEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCITVA 118

[Close]

BLAST of Lag0017296 vs. NCBI nr
Match: XP_023540551.1 (uncharacterized protein LOC111800878 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-49
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 4   KGVLGKAFCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCACIIEGTTEGAVKLQQLAAEAN 63
           KGVLGKA+CKCGEGWKCEIKRTQGPDAGKTFVNCGNNC CIIEGT EGAVKLQQLA E  
Sbjct: 22  KGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCIIEGTAEGAVKLQQLAGEGG 81

Query: 64  FEGASCECGEGWSCTISKIEGPQEAKPFAKCDGDCSCITVA 105
           FEGASCECGEGWSCTISKIEGPQ+ K FAKC GDCSCITVA
Sbjct: 82  FEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCITVA 122

[Close]

BLAST of Lag0017296 vs. NCBI nr
Match: XP_023540550.1 (uncharacterized protein LOC111800878 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-49
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 4   KGVLGKAFCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCACIIEGTTEGAVKLQQLAAEAN 63
           KGVLGKA+CKCGEGWKCEIKRTQGPDAGKTFVNCGNNC CIIEGT EGAVKLQQLA E  
Sbjct: 23  KGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCIIEGTAEGAVKLQQLAGEGG 82

Query: 64  FEGASCECGEGWSCTISKIEGPQEAKPFAKCDGDCSCITVA 105
           FEGASCECGEGWSCTISKIEGPQ+ K FAKC GDCSCITVA
Sbjct: 83  FEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCITVA 123

The following BLAST results are available for this feature:

BLAST of Lag0017296 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005604.1	6.1e-51	91.18	uncharacterized protein LOC111498543 [Cucurbita maxima]	[more]
KAG6596727.1	5.2e-50	90.20	hypothetical protein SDJN03_09907, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022924877.1	5.2e-50	90.20	uncharacterized protein LOC111432244 [Cucurbita moschata]	[more]
XP_023540551.1	2.0e-49	90.10	uncharacterized protein LOC111800878 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023540550.1	2.0e-49	90.10	uncharacterized protein LOC111800878 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0017296 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017296.1	Lag0017296.1	mRNA