Lag0017282 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017282
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	GTPase
Location	chr5: 1719039 .. 1721119 (-)
RNA-Seq Expression	Lag0017282
Synteny	Lag0017282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTTTGGGAGATCACTCTTGGAACCGCTTATTTCTTGGGGCTCAAGCGCACTTATCGCCTCGCCCTCAAGCTTCAACGTCGCATCGTCAGCCCAAAGCTTCCCAAGATCCGCCAGTTTCTTCACCGGTAATTTCACTTTCTGTCTTATTTTGATCTGTTGATTCCATGACGATGTAATTTGAACGGGAAATGTGTTTGTGTGTTGCGTTATTTGTTGATTCGGCTTTCTTTTCCTATCGCGAGTTCGAAACGAGATAAACCCTGTTTTGGGTTTCCATTTTCTCATTCGTATGATTCGATTCGTTTGGTTGAAGTTGATTAAATGTGGTGAAATGGAGGATTGTTCGTTTTACGAACCAAGAAATTTTGTCTAGCATCAAGAAAATCATTGGAAGGTTGATGAATCTTCTTGTCTTTCTTTTATTTCATTGCTCTTTGTAATCTTGTTGTTCTGTGTAATGATATTGATAGTTGTTATGTAAGAAGTTGTGTGGCATTAGCTAGATAGAGAGAAGTAGAGAGGATGACTTTACAGCCAATTGTTACCAAATTTTGCAATTAGGGCACTATTTCCTCAACCAAAAGATAAGAGGTTAGAATCCCCACCTTGAACTCGAAAAAAATTGTTACCAAATCTTCCCACCTTGTTTCCTTTGTTATATGCTGTACTTTTTCCAGTTCTGTCCTTGGATATGTAATTTGATTTGCCTTTTCGCTTCCTAGTGGGTTGTTATGATATGTAATTTAGAGGAAACATTGATTAGTTAATCTCTTGAGCCATGCTCACTTTACAGGAAAGACTAAAGAGGGGATCTCTTCTTCCTCTCTCTTATTTTCATTCTCGTTCATCAATAGGATTTCAATTCATTCTCCCTTTTATCTTCCTGCGGTAGTTCATTCTTCTGATGGATTTGCCAATCTTTTTCAGATCTTCTAGTTCTAACATGGGGTGGAAATCCACCTTTCTGAAGCATGATCTAGACATTTTGATATGGCCTGTGAATTGTGCTAACTGTTTCAAGGTTCATTATGACGGGAACCTAAAGGGATGCCTTGGTGGTGGTAAGGGCTTAGAATTTAGATAGATACCTTCCAAGATCTAAAAACCTTAAACTATTCTTGTCTCGGGTGGAAAAAATCCCCTTAAGAATTAGTAGGGTGAGCCATGAGCATAATGCAAGAAGTGAGCCTGAACATCTCGATTATATTATAAATGACGATGATGTAAAAACCACGTTCATTGCTTTTTATCTTGGGCTACAATGAGCGGAGTGCATAGCAAGTTAGCATGTGTATGTGACCGCATCGTGTTTATGAGAAGGAGAGTTAACTCTCATTCGTTTCCTTGTGTAATGTGTTTCTTCTAAATTTAGTATTAGATGGTAGATTGTCTTGTTGTGTTGGTTTAAAGTTGAGCTGACAAACAACTGCTTAATTTATGACTGTTTTTTCTATGACAACATTCCTCCCTTCCTATAGAATTTGGTGTCACTACGAATGTCCTGATTTCTTATCAATACGACACTTTCAATATCCATTAAACATGCTAAATTTCTTACCACTACGAATATTAATGTGTTAAATATTCTTATTCAATAACTATGCGTGATTCCTTTCTATTGCAGACGTTCCCGCGCCGTATTTGATGTAGCATTGAAGGTTCACCTGAACATACAGCAGAGAGACTTAGAAGTTGGTCGGAATCTTGGTAACTGGATTCTACGACGGCTCGACAAATACAAACCATCAGCCCAAATTCGTAAACTGAATGATGGATCGACCACAAATTCGACGAAGCAGATTTCCAGCTCCTCTGTCTTGAAAAATCCAGAGAGCTCCCAGATCCCAAAGAATCCAAAATCGTCTAGACAACTATTTACCTCATCAAAAAACATATGGCCTAGGCAATTTCCTACAATTTCCATGATGATCAAGTCTTCAAAGCCAGCCACAACATTGATCCAGCATAGACATTTCGGCATTTTGACACCCGACGCATTGGGGCCGAAATACGTAAGAGGATGGCATGATGGGGTCATTAGGGAGGATATAAGGCAATGGATGTTGCGAAAATAG

mRNA sequence

ATGGTGCTTTGGGAGATCACTCTTGGAACCGCTTATTTCTTGGGGCTCAAGCGCACTTATCGCCTCGCCCTCAAGCTTCAACGTCGCATCGTCAGCCCAAAGCTTCCCAAGATCCGCCAGTTTCTTCACCGACGTTCCCGCGCCGTATTTGATGTAGCATTGAAGGTTCACCTGAACATACAGCAGAGAGACTTAGAAGTTGGTCGGAATCTTGGTAACTGGATTCTACGACGGCTCGACAAATACAAACCATCAGCCCAAATTCGTAAACTGAATGATGGATCGACCACAAATTCGACGAAGCAGATTTCCAGCTCCTCTGTCTTGAAAAATCCAGAGAGCTCCCAGATCCCAAAGAATCCAAAATCGTCTAGACAACTATTTACCTCATCAAAAAACATATGGCCTAGGCAATTTCCTACAATTTCCATGATGATCAAGTCTTCAAAGCCAGCCACAACATTGATCCAGCATAGACATTTCGGCATTTTGACACCCGACGCATTGGGGCCGAAATACGTAAGAGGATGGCATGATGGGGTCATTAGGGAGGATATAAGGCAATGGATGTTGCGAAAATAG

Coding sequence (CDS)

ATGGTGCTTTGGGAGATCACTCTTGGAACCGCTTATTTCTTGGGGCTCAAGCGCACTTATCGCCTCGCCCTCAAGCTTCAACGTCGCATCGTCAGCCCAAAGCTTCCCAAGATCCGCCAGTTTCTTCACCGACGTTCCCGCGCCGTATTTGATGTAGCATTGAAGGTTCACCTGAACATACAGCAGAGAGACTTAGAAGTTGGTCGGAATCTTGGTAACTGGATTCTACGACGGCTCGACAAATACAAACCATCAGCCCAAATTCGTAAACTGAATGATGGATCGACCACAAATTCGACGAAGCAGATTTCCAGCTCCTCTGTCTTGAAAAATCCAGAGAGCTCCCAGATCCCAAAGAATCCAAAATCGTCTAGACAACTATTTACCTCATCAAAAAACATATGGCCTAGGCAATTTCCTACAATTTCCATGATGATCAAGTCTTCAAAGCCAGCCACAACATTGATCCAGCATAGACATTTCGGCATTTTGACACCCGACGCATTGGGGCCGAAATACGTAAGAGGATGGCATGATGGGGTCATTAGGGAGGATATAAGGCAATGGATGTTGCGAAAATAG

Protein sequence

MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKLPKIRQFLHRRSRAVFDVALKVHLNIQQRDLEVGRNLGNWILRRLDKYKPSAQIRKLNDGSTTNSTKQISSSSVLKNPESSQIPKNPKSSRQLFTSSKNIWPRQFPTISMMIKSSKPATTLIQHRHFGILTPDALGPKYVRGWHDGVIREDIRQWMLRK

Homology

[Close]

BLAST of Lag0017282 vs. NCBI nr
Match: XP_038903240.1 (uncharacterized protein LOC120089886 [Benincasa hispida])

HSP 1 Score: 330.5 bits (846), Expect = 9.8e-87
Identity = 165/192 (85.94%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKLPKIRQFLHRRSRAVFDVALKVHLNI 60
           MVLWEITLGTAYFLGLKRTYRLALKLQRR+VSPKLPKIRQFLHRR+RAVFD+ALKVHLNI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRVVSPKLPKIRQFLHRRTRAVFDIALKVHLNI 60

Query: 61  QQRDLEVGRNLGNWILRRLDKYKPSAQIRKLNDGSTTNSTKQISSSSVLKNPESSQIPKN 120
           QQRDLEVGRNLGNWILR LD+YKPSAQIRK + GS TN+TKQ+SSSSVLK PESSQ  K 
Sbjct: 61  QQRDLEVGRNLGNWILRLLDRYKPSAQIRKQDGGSMTNTTKQLSSSSVLKTPESSQTLKK 120

Query: 121 PKSSRQLFTSSKNIWPRQFPTISMMIKSSKPATTLIQHRHFGILTPDALGPKYVRGWHDG 180
           P SSRQLFTSS NIWP+QFPTISMM+KSSK ATT+IQHRHFGILTP A  P+YVRGWHDG
Sbjct: 121 PNSSRQLFTSSTNIWPKQFPTISMMMKSSKSATTMIQHRHFGILTPGAPWPRYVRGWHDG 180

Query: 181 VIREDIRQWMLR 193
           V+REDIRQWML+
Sbjct: 181 VMREDIRQWMLQ 192

[Close]

BLAST of Lag0017282 vs. NCBI nr
Match: XP_022965321.1 (uncharacterized protein LOC111465222 [Cucurbita maxima])

HSP 1 Score: 322.4 bits (825), Expect = 2.7e-84
Identity = 162/192 (84.38%), Postives = 173/192 (90.10%), Query Frame = 0


Query: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKLPKIRQFLHRRSRAVFDVALKVHLNI 60
           MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPK PKIRQFLHRR+R VFDVALKVHLNI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKFPKIRQFLHRRTRIVFDVALKVHLNI 60

Query: 61  QQRDLEVGRNLGNWILRRLDKYKPSAQIRKLNDGSTTNSTKQISSSSVLKNPESSQIPKN 120
           QQRDLEVGRNLGNWILR LD+YKPSAQIRK + GS  N+TKQISSS VLKNPESSQ+ K 
Sbjct: 61  QQRDLEVGRNLGNWILRLLDRYKPSAQIRKQDGGSIKNTTKQISSSPVLKNPESSQVLKK 120

Query: 121 PKSSRQLFTSSKNIWPRQFPTISMMIKSSKPATTLIQHRHFGILTPDALGPKYVRGWHDG 180
           PKSSRQLFTSS NIWP+QFPTISM +K S PATT+IQHRHFGILTP+   P+Y RGWH G
Sbjct: 121 PKSSRQLFTSSTNIWPKQFPTISMTMKPSNPATTMIQHRHFGILTPEVPRPRYGRGWHGG 180

Query: 181 VIREDIRQWMLR 193
           VIREDIRQWML+
Sbjct: 181 VIREDIRQWMLQ 192

[Close]

BLAST of Lag0017282 vs. NCBI nr
Match: XP_008448656.1 (PREDICTED: uncharacterized protein LOC103490759 [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 1.1e-82
Identity = 160/192 (83.33%), Postives = 174/192 (90.62%), Query Frame = 0


Query: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKLPKIRQFLHRRSRAVFDVALKVHLNI 60
           MVLWEITLGTAYFLGLKRTYRLALKLQRRI+SPKLPKIRQF+HRR+R VFDVALKVHLNI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIISPKLPKIRQFVHRRTRNVFDVALKVHLNI 60

Query: 61  QQRDLEVGRNLGNWILRRLDKYKPSAQIRKLNDGSTTNSTKQISSSSVLKNPESSQIPKN 120
           Q+RDLEVGRNLGNWILR LD+YKPSAQIRK +  S TN+ KQISSSS+LK PESSQ  K 
Sbjct: 61  QKRDLEVGRNLGNWILRLLDRYKPSAQIRKQDGESMTNAKKQISSSSILKMPESSQTLKK 120

Query: 121 PKSSRQLFTSSKNIWPRQFPTISMMIKSSKPATTLIQHRHFGILTPDALGPKYVRGWHDG 180
           PKSSRQLFTSS NIWP+QFPTISMMIKSS PA+ +IQHRHFGILTP A GPKYVRGW  G
Sbjct: 121 PKSSRQLFTSSTNIWPKQFPTISMMIKSSNPASNMIQHRHFGILTPVAPGPKYVRGWQGG 180

Query: 181 VIREDIRQWMLR 193
           VIREDIR+W+L+
Sbjct: 181 VIREDIRRWLLQ 192

[Close]

BLAST of Lag0017282 vs. NCBI nr
Match: XP_022923349.1 (uncharacterized protein LOC111431071 [Cucurbita moschata])

HSP 1 Score: 317.0 bits (811), Expect = 1.1e-82
Identity = 161/193 (83.42%), Postives = 174/193 (90.16%), Query Frame = 0


Query: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKLPKIRQFLHRRSRAVFDVALKVHLNI 60
           MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPK PKIRQFLHRR+R VFDVALKVHLNI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKFPKIRQFLHRRTRIVFDVALKVHLNI 60

Query: 61  QQRDLEVGRNLGNWILRRLDKYKPSAQIRKLNDGSTTNSTKQISSSSVLKNPESSQIPKN 120
           QQRDLEVGRNLGNWILR LD+YKPSAQIRK + GS  N+TKQISS+SV KNPESSQ+ K 
Sbjct: 61  QQRDLEVGRNLGNWILRLLDRYKPSAQIRKQDGGSIKNATKQISSTSVSKNPESSQVLKK 120

Query: 121 PKSSRQLFTSSKNIWPRQFPTISMMIKSSKPATTLIQHRHFGILTPDALGPKY-VRGWHD 180
           PKSSRQLFTSS N+WP+QFPTISM +K S PATT+IQHRHFGILTP+A  P+Y  RGWH 
Sbjct: 121 PKSSRQLFTSSTNLWPKQFPTISMTMKPSNPATTMIQHRHFGILTPEAPRPRYGGRGWHG 180

Query: 181 GVIREDIRQWMLR 193
           GVIREDIRQWML+
Sbjct: 181 GVIREDIRQWMLQ 193

[Close]

BLAST of Lag0017282 vs. NCBI nr
Match: XP_004148752.1 (uncharacterized protein LOC101208416 [Cucumis sativus] >KGN55731.1 hypothetical protein Csa_010730 [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 1.5e-82
Identity = 160/192 (83.33%), Postives = 173/192 (90.10%), Query Frame = 0


Query: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKLPKIRQFLHRRSRAVFDVALKVHLNI 60
           MVLWEITLGTAYFLGLKRTYRLALKLQRRI+SPKLPKIRQF+ RR+R VFDVALKVHLNI
Sbjct: 1   MVLWEITLGTAYFLGLKRTYRLALKLQRRIISPKLPKIRQFVRRRTRDVFDVALKVHLNI 60

Query: 61  QQRDLEVGRNLGNWILRRLDKYKPSAQIRKLNDGSTTNSTKQISSSSVLKNPESSQIPKN 120
           Q+RDLEVGRNLGNWILR LD+YKPSAQIRK +  S  N+ KQISSSS+LK PESSQ  K 
Sbjct: 61  QKRDLEVGRNLGNWILRLLDRYKPSAQIRKQDGESMANAKKQISSSSILKMPESSQTLKK 120

Query: 121 PKSSRQLFTSSKNIWPRQFPTISMMIKSSKPATTLIQHRHFGILTPDALGPKYVRGWHDG 180
           PKSSRQLFTSS NIWP+QFPTISMMIKSS PA+ +IQHRHFGILTP ALGPKYVRGW  G
Sbjct: 121 PKSSRQLFTSSTNIWPKQFPTISMMIKSSNPASNMIQHRHFGILTPAALGPKYVRGWQGG 180

Query: 181 VIREDIRQWMLR 193
           VIR+DIRQWML+
Sbjct: 181 VIRDDIRQWMLQ 192

The following BLAST results are available for this feature:

BLAST of Lag0017282 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903240.1	9.8e-87	85.94	uncharacterized protein LOC120089886 [Benincasa hispida]	[more]
XP_022965321.1	2.7e-84	84.38	uncharacterized protein LOC111465222 [Cucurbita maxima]	[more]
XP_008448656.1	1.1e-82	83.33	PREDICTED: uncharacterized protein LOC103490759 [Cucumis melo]	[more]
XP_022923349.1	1.1e-82	83.42	uncharacterized protein LOC111431071 [Cucurbita moschata]	[more]
XP_004148752.1	1.5e-82	83.33	uncharacterized protein LOC101208416 [Cucumis sativus] >KGN55731.1 hypothetical ...	[more]

BLAST of Lag0017282 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..129
None	No IPR available	PANTHER	PTHR35998	FAMILY NOT NAMED	coord: 1..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017282.1	Lag0017282.1	mRNA