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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCATCGTTCTTTCCGACGGGTAAAGTTCCCCCGGTGGGACCGGTCATCCGGTGGGCGCCTCCGAAACTGTACCGTAAACTGCCAGCTAATTTCTTCTGGCACCCACCGCCCACGGTAATTCACAATCAATCTCCAATCACTCCTTCTCCTTCTGCCACGTGTCCTCATTAGTTCAGCTGCTACGCCACGTTACGCTCTCTCACTCGCCCACGCGCCTCCACCGCCACGCGCCTACGTGTGTTTCGAGAATCTCACGAACTTTACGGAAGGCGTTGGGAAGGGAAAAAGTCCATTTTGCCCCCGGAATTTGCGAGGAAAGTGGCGGAAAAAGGTGGAGAAATTGGACTTTTGTGTGAGCATAACAAACTGATGAAGGTGGGTGGAAATGGATCCTCTGCGGGTGGGCCGCTTCAACCTTCGTAA mRNA sequence ATGGCATCGTTCTTTCCGACGGGTAAAGTTCCCCCGGTGGGACCGGTCATCCGGTGGGCGCCTCCGAAACTGTACCGTAAACTGCCAGCTAATTTCTTCTGGCACCCACCGCCCACGTTCAGCTGCTACGCCACGTTACGCTCTCTCACTCGCCCACGCGCCTCCACCGCCACGCGCCTACGTGTGTTTCGAGAATCTCACGAACTTTACGGAAGGCGTTGGGAAGGGAAAAAGTCCATTTTGCCCCCGGAATTTGCGAGGAAAGTGGCGGAAAAAGGTGGAGAAATTGGACTTTTGTGTGAGCATAACAAACTGATGAAGGTGGGTGGAAATGGATCCTCTGCGGGTGGGCCGCTTCAACCTTCGTAA Coding sequence (CDS) ATGGCATCGTTCTTTCCGACGGGTAAAGTTCCCCCGGTGGGACCGGTCATCCGGTGGGCGCCTCCGAAACTGTACCGTAAACTGCCAGCTAATTTCTTCTGGCACCCACCGCCCACGTTCAGCTGCTACGCCACGTTACGCTCTCTCACTCGCCCACGCGCCTCCACCGCCACGCGCCTACGTGTGTTTCGAGAATCTCACGAACTTTACGGAAGGCGTTGGGAAGGGAAAAAGTCCATTTTGCCCCCGGAATTTGCGAGGAAAGTGGCGGAAAAAGGTGGAGAAATTGGACTTTTGTGTGAGCATAACAAACTGATGAAGGTGGGTGGAAATGGATCCTCTGCGGGTGGGCCGCTTCAACCTTCGTAA Protein sequence MASFFPTGKVPPVGPVIRWAPPKLYRKLPANFFWHPPPTFSCYATLRSLTRPRASTATRLRVFRESHELYGRRWEGKKSILPPEFARKVAEKGGEIGLLCEHNKLMKVGGNGSSAGGPLQPS
Homology
BLAST of Lag0017277 vs. NCBI nr
Match: KAG6577729.1 (Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 67.4 bits (163), Expect = 9.8e-08 Identity = 48/122 (39.34%), Postives = 55/122 (45.08%), Query Frame = 0
Query: 1 MASFFPTGKVPPVGPVIRWAPPKLYRKLPANFFWHPPPTFSCYATLRSLTRPRASTATRL 60
MASFFP KV PVGPVIRWA +
Sbjct: 1 MASFFPMDKVRPVGPVIRWASQTVL----------------------------------- 60
Query: 61 RVFRESHELYGRRWEGKKSILPPEFARKVAEKGGEIGLLCEHNKLMKVGGNGSSAG-GPL 120
R++GKKSILPPEF RKV EK ++ L + N+L KVGGN SSA GPL
Sbjct: 61 ------------RFKGKKSILPPEFPRKVLEKVEKLDFLLKQNELTKVGGNESSAECGPL 75
Query: 121 QP 122
P
Sbjct: 121 PP 75
BLAST of Lag0017277 vs. NCBI nr
Match: KAG6596721.1 (hypothetical protein SDJN03_09901, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 61.2 bits (147), Expect = 7.0e-06 Identity = 44/96 (45.83%), Postives = 48/96 (50.00%), Query Frame = 0
Query: 1 MASFFPTGKVPPVGPVIRWAPPKLYRKLPANFFWHPPPTFSCYATLRSLTRPRASTA-TR 60
+AS FPTGKV PV PVIR FSCYATL S+T RA
Sbjct: 23 LASLFPTGKVAPVEPVIR---------------------FSCYATLCSVTHSRAYVCFEN 82
Query: 61 LRVFRESHELYGRRWEGKKSILPPEFARKVAEKGGE 96
L F ES +KSILPP+ RKVAEKGGE
Sbjct: 83 LTSFTES--------ASEKSILPPKSTRKVAEKGGE 89
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KAG6577729.1 | 9.8e-08 | 39.34 | Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| KAG6596721.1 | 7.0e-06 | 45.83 | hypothetical protein SDJN03_09901, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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