Lag0017239 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017239
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein PAM68, chloroplastic
Location	chr5: 1299192 .. 1300489 (-)
RNA-Seq Expression	Lag0017239
Synteny	Lag0017239

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCATTGCTGGATCGCTCAACCTTCCTCTCGCGCCTTCAAACCTTCCATCAATTCACATTAAGGTACTCTTCTCACTTCTCCTAGCGATCGCGATTTTCTTCTCGTTACTTCTGAGTTCTGAAGAAATCTTTTCACCGATAACTACTTTGAATTATACCGAAACGGAACGAAGATGAAGGATTCTTTAATCTGAACAGTTCATCAATCGATTATCCATAAATTCGTAAATCAACAATCGGTTTTGTAAACATTAGGAGTTAGGATTTAGGATTTTACTTTACCAGCGATACTTGTAAAACCTAGAGCGATTCGTTGATCCATCTCAATGATAACTACTTTGAATTACACTGAAACGGAAGGAAGACGAAGGATTCTTTAATCTGAATTTGTTCATCAGTCGATTTTCCGTAAGTTCGTAAATCAACAATCGGTTTTGTTAACATTATGAGTCAGGATTTAGGATTTACTTTACCAGGGATTTTTGTAAAACCTAGACCGATCCATTGGTCCAATTCAACGATAACTACTTGAGTTTTACTGAAACGGAAGGAAGATGAAGGATGCTTAATCGATTTTCCATAAGTTTGTAAATCCACAACCAGTTTCGTAAACAATAGGATCCTGTAAAACCTAGAGCGATCTGTTGATCCATTCCGATTGAAGTTAAGTTGAGTGATAAAATTGAAAATCCTGTGGAAATTATCGATTACGAGACGAATTTCTGTTTGTTCTGCAGAGAAATTGTAAGTTCTCGATCCATTCGAAAAGCCACGAAAGGAACCGTTTCCCTCTCTTGACACCGAGCATTTACCAAACCCAAACTCGCATGAACCACTCCACGATTCTAAATGCAACATTGAGAAGTCCAAAGGGATTCGGACCAGCTCCAAGGAAAAGGACGAAGAAACCCAAAACGGAAGGAGATGGAGAAGAAGAAAGTGAGGAAGATGAGGAAGATGAGGAAGAAGCTAGTGTAATACCAGAAGTAGTGACGAACAGGATGATCAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTTTTCCCATTCTTCTATTACCTGAAAGTTGTTTTGAAGATTGATGTGCCTTCATGGGTGCCAGTCATTGTGTCATTCTTCTTCTTTGGTTCTGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGTTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGGTGGGTCTAATAAGAAATAG

mRNA sequence

ATGGCCGCCATTGCTGGATCGCTCAACCTTCCTCTCGCGCCTTCAAACCTTCCATCAATTCACATTAAGAGAAATTGTAAGTTCTCGATCCATTCGAAAAGCCACGAAAGGAACCGTTTCCCTCTCTTGACACCGAGCATTTACCAAACCCAAACTCGCATGAACCACTCCACGATTCTAAATGCAACATTGAGAAGTCCAAAGGGATTCGGACCAGCTCCAAGGAAAAGGACGAAGAAACCCAAAACGGAAGGAGATGGAGAAGAAGAAAGTGAGGAAGATGAGGAAGATGAGGAAGAAGCTAGTGTAATACCAGAAGTAGTGACGAACAGGATGATCAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTTTTCCCATTCTTCTATTACCTGAAAGTTGTTTTGAAGATTGATGTGCCTTCATGGGTGCCAGTCATTGTGTCATTCTTCTTCTTTGGTTCTGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGTTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGGTGGGTCTAATAAGAAATAG

Coding sequence (CDS)

ATGGCCGCCATTGCTGGATCGCTCAACCTTCCTCTCGCGCCTTCAAACCTTCCATCAATTCACATTAAGAGAAATTGTAAGTTCTCGATCCATTCGAAAAGCCACGAAAGGAACCGTTTCCCTCTCTTGACACCGAGCATTTACCAAACCCAAACTCGCATGAACCACTCCACGATTCTAAATGCAACATTGAGAAGTCCAAAGGGATTCGGACCAGCTCCAAGGAAAAGGACGAAGAAACCCAAAACGGAAGGAGATGGAGAAGAAGAAAGTGAGGAAGATGAGGAAGATGAGGAAGAAGCTAGTGTAATACCAGAAGTAGTGACGAACAGGATGATCAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTTTTCCCATTCTTCTATTACCTGAAAGTTGTTTTGAAGATTGATGTGCCTTCATGGGTGCCAGTCATTGTGTCATTCTTCTTCTTTGGTTCTGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGTTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGGTGGGTCTAATAAGAAATAG

Protein sequence

MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTILNATLRSPKGFGPAPRKRTKKPKTEGDGEEESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK

Homology

[Close]

BLAST of Lag0017239 vs. NCBI nr
Match: XP_023540526.1 (protein PAM68, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.4 bits (877), Expect = 2.7e-90
Identity = 180/213 (84.51%), Postives = 190/213 (89.20%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTIL 60
           MAAIAGSLNLPLAPS LPS+HI RN   SI SKSH+RN F LL PS+YQ QTR NH+ I+
Sbjct: 1   MAAIAGSLNLPLAPSQLPSLHITRNYNLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRSPKGFGPAPRKRTKKPKTE--GDGEEESE----EDEEDEEEASVIPEVVTNRMIS 120
           NATLRSPKGFGP PRK+ KK KT+  GDGEEESE    E+EE+EE+  VIPEVVTNRMIS
Sbjct: 61  NATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRMIS 120

Query: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 208
           DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

[Close]

BLAST of Lag0017239 vs. NCBI nr
Match: XP_023005760.1 (protein PAM68, chloroplastic [Cucurbita maxima])

HSP 1 Score: 338.2 bits (866), Expect = 5.0e-89
Identity = 180/213 (84.51%), Postives = 190/213 (89.20%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTIL 60
           MAAI GSLNLPLAPS LPS+HI R  K SI SKSH+RN F LL PS+YQ QTR NH+ I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRKYKLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRSPKGFGPAPR-KRTKKPKTE--GDGEEES---EEDEEDEEEASVIPEVVTNRMIS 120
           NATLRSPKGFGPAPR K+ KK KTE  GDGEEES   E++EE+EE+  VIPEVVTNRMIS
Sbjct: 61  NATLRSPKGFGPAPRKKKKKKKKTEGGGDGEEESEDEEDEEEEEEDRGVIPEVVTNRMIS 120

Query: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 208
           DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

[Close]

BLAST of Lag0017239 vs. NCBI nr
Match: XP_022949106.1 (protein PAM68, chloroplastic [Cucurbita moschata])

HSP 1 Score: 335.9 bits (860), Expect = 2.5e-88
Identity = 178/212 (83.96%), Postives = 187/212 (88.21%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTIL 60
           MAAI GSLNLPLAPS LPS+HI RN   SI SKS +RN F LL PS+YQ QTR NH+ I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRNYNLSIQSKSQKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRSPKGFGPAPR-KRTKKPKTEGDGEEESE----EDEEDEEEASVIPEVVTNRMISR 120
           NATLRSPKGFGPAPR K+ KK K  GDGEEESE    E+EE+EE+  VIPEVVTNRMISR
Sbjct: 61  NATLRSPKGFGPAPRKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRMISR 120

Query: 121 MGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD 180
           MGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD
Sbjct: 121 MGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD 180

Query: 181 PMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 208
           PMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK
Sbjct: 181 PMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 212

[Close]

BLAST of Lag0017239 vs. NCBI nr
Match: KAG6596699.1 (Protein PAM68, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028232.1 Protein PAM68, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335.5 bits (859), Expect = 3.3e-88
Identity = 178/213 (83.57%), Postives = 187/213 (87.79%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTIL 60
           MAAI GSLNLPLAPS LPS+HI RN   SI SKS +RN F LL PS+YQ QTR NH+ I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRNYNLSIQSKSQKRNYFSLLRPSLYQNQTRTNHALIV 60

Query: 61  NATLRSPKGFGPAPR-KRTKKPKTEGDGEEES-----EEDEEDEEEASVIPEVVTNRMIS 120
           NATLRSPKGFGPAPR K+ KK K  GDGEEES     EE+EE+EE+  VIPEVVTNRMIS
Sbjct: 61  NATLRSPKGFGPAPRKKKKKKTKGGGDGEEESEDEEDEEEEEEEEDRGVIPEVVTNRMIS 120

Query: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 208
           DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

[Close]

BLAST of Lag0017239 vs. NCBI nr
Match: XP_022145390.1 (protein PAM68, chloroplastic [Momordica charantia])

HSP 1 Score: 330.5 bits (846), Expect = 1.0e-86
Identity = 171/208 (82.21%), Postives = 183/208 (87.98%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTIL 60
           MAAIAGSLNLPLAPSNLPS+ IKRNCKFSIHSKSHER RFPLL PSIYQ QTR+N   IL
Sbjct: 1   MAAIAGSLNLPLAPSNLPSLRIKRNCKFSIHSKSHERIRFPLLRPSIYQNQTRINQPAIL 60

Query: 61  NATLRSPKGFGPAPRKRTKKPK--TEGDGEEESEEDEEDEEEASVIPEVVTNRMISRMGF 120
            ATLRSPKGFGPAP+KR KK +   E D +E+ +EDE++E E  VIPEVVTNRM+SRMGF
Sbjct: 61  RATLRSPKGFGPAPKKRKKKSQESDEEDEDEDEDEDEDEEAEGGVIPEVVTNRMMSRMGF 120

Query: 121 SVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMR 180
           SVGIPLLIGLLFFPFFYYLKV LKIDVP+WVP IVSFFFFGSALLGVSYGIVSSSWDPMR
Sbjct: 121 SVGIPLLIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPMR 180

Query: 181 EGSLLGWNEAQKNWPVFWQSIWSGGSNK 207
           EGSLLGWNEAQKNWPVFWQSIW+    K
Sbjct: 181 EGSLLGWNEAQKNWPVFWQSIWAKSDKK 208

[Close]

BLAST of Lag0017239 vs. ExPASy Swiss-Prot
Match: O49668 (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.9e-55
Identity = 109/155 (70.32%), Postives = 128/155 (82.58%), Query Frame = 0


Query: 60  LNATLRSPKGFGPAPR--KRTKKPK------TEGDGEEESEEDEEDEEEASVIPEVVTNR 119
           L+AT+ SPKGFGP P+  K++KKPK       + D E+E ++DEEDE E  VIPE+VTNR
Sbjct: 60  LHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNR 119

Query: 120 MISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVS 179
           MISRMGF+VG+PL IGLLFFPFFYYLKV LK+DVP+WVP IVSF FFG+AL GVSYGIVS
Sbjct: 120 MISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVS 179

Query: 180 SSWDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNK 207
           SSWDP+REGSLLGWNEA+KNWPVFWQS W+    +
Sbjct: 180 SSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of Lag0017239 vs. ExPASy Swiss-Prot
Match: Q9LTD9 (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.5e-11
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 89  EESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSW 148
           E+    + D E+   IP+ V  RM+ R+  SVG PL +G+        LK     DVP W
Sbjct: 57  EKPGRPDPDPEDDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLW 116

Query: 149 VPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQ 198
           VP + +   FGS+ LG++YG +S++ DP +  SL G  EA++NW   W+
Sbjct: 117 VPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of Lag0017239 vs. ExPASy TrEMBL
Match: A0A6J1KYA4 (protein PAM68, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498663 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.4e-89
Identity = 180/213 (84.51%), Postives = 190/213 (89.20%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTIL 60
           MAAI GSLNLPLAPS LPS+HI R  K SI SKSH+RN F LL PS+YQ QTR NH+ I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRKYKLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRSPKGFGPAPR-KRTKKPKTE--GDGEEES---EEDEEDEEEASVIPEVVTNRMIS 120
           NATLRSPKGFGPAPR K+ KK KTE  GDGEEES   E++EE+EE+  VIPEVVTNRMIS
Sbjct: 61  NATLRSPKGFGPAPRKKKKKKKKTEGGGDGEEESEDEEDEEEEEEDRGVIPEVVTNRMIS 120

Query: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 208
           DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

[Close]

BLAST of Lag0017239 vs. ExPASy TrEMBL
Match: A0A6J1GB37 (protein PAM68, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452558 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.2e-88
Identity = 178/212 (83.96%), Postives = 187/212 (88.21%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTIL 60
           MAAI GSLNLPLAPS LPS+HI RN   SI SKS +RN F LL PS+YQ QTR NH+ I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRNYNLSIQSKSQKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRSPKGFGPAPR-KRTKKPKTEGDGEEESE----EDEEDEEEASVIPEVVTNRMISR 120
           NATLRSPKGFGPAPR K+ KK K  GDGEEESE    E+EE+EE+  VIPEVVTNRMISR
Sbjct: 61  NATLRSPKGFGPAPRKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRMISR 120

Query: 121 MGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD 180
           MGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD
Sbjct: 121 MGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD 180

Query: 181 PMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 208
           PMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK
Sbjct: 181 PMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 212

[Close]

BLAST of Lag0017239 vs. ExPASy TrEMBL
Match: A0A6J1CUC6 (protein PAM68, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014847 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 5.1e-87
Identity = 171/208 (82.21%), Postives = 183/208 (87.98%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTIL 60
           MAAIAGSLNLPLAPSNLPS+ IKRNCKFSIHSKSHER RFPLL PSIYQ QTR+N   IL
Sbjct: 1   MAAIAGSLNLPLAPSNLPSLRIKRNCKFSIHSKSHERIRFPLLRPSIYQNQTRINQPAIL 60

Query: 61  NATLRSPKGFGPAPRKRTKKPK--TEGDGEEESEEDEEDEEEASVIPEVVTNRMISRMGF 120
            ATLRSPKGFGPAP+KR KK +   E D +E+ +EDE++E E  VIPEVVTNRM+SRMGF
Sbjct: 61  RATLRSPKGFGPAPKKRKKKSQESDEEDEDEDEDEDEDEEAEGGVIPEVVTNRMMSRMGF 120

Query: 121 SVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMR 180
           SVGIPLLIGLLFFPFFYYLKV LKIDVP+WVP IVSFFFFGSALLGVSYGIVSSSWDPMR
Sbjct: 121 SVGIPLLIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPMR 180

Query: 181 EGSLLGWNEAQKNWPVFWQSIWSGGSNK 207
           EGSLLGWNEAQKNWPVFWQSIW+    K
Sbjct: 181 EGSLLGWNEAQKNWPVFWQSIWAKSDKK 208

[Close]

BLAST of Lag0017239 vs. ExPASy TrEMBL
Match: A0A1S3BKY8 (protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.5e-83
Identity = 173/218 (79.36%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSIYQTQTRMNHSTIL 60
           MAAIAGSLNLPLAPSNLP + IK+NC+FSIH KS+ERN FP   P+I Q QTR NH T L
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSL 60

Query: 61  NATLRSPKGFGPAPRKRTKKPKTEGDG---------EEESEEDEED--EEEASVIPEVVT 120
           NATLR PKGFGPAPRK+ K  KT+G+G         EEE  E+EED  EEE  VIPEVVT
Sbjct: 61  NATLRRPKGFGPAPRKK-KMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVT 120

Query: 121 NRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRM+SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 208
           VSSSWDPMREGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIW-GGSNKK 216

[Close]

BLAST of Lag0017239 vs. ExPASy TrEMBL
Match: A0A0A0L507 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.7e-82
Identity = 171/214 (79.91%), Postives = 183/214 (85.51%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSIHIKRNCKFSIHSKSHERNRFPLLTPSI--YQTQTRMNHST 60
           MAAIAGSLNLPLAPSNLP + IK+NCKFS+H KS+ERN FP L P+I   Q QT  N  T
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 61  ILNATLRSPKGFGPAPR-KRTKKPKTEG----DGEEESEEDEEDEEEASVIPEVVTNRMI 120
            LNATLR PKGFGPA R K+TKK + EG    D EEE EEDEE+EEE  VIPEVVTNRM+
Sbjct: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMM 120

Query: 121 SRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 208
           WDP+REGSLLGWNEAQKNWPVFW+SIW GGSNKK
Sbjct: 181 WDPLREGSLLGWNEAQKNWPVFWKSIW-GGSNKK 213

[Close]

BLAST of Lag0017239 vs. TAIR 10
Match: AT4G19100.1 (Protein of unknown function (DUF3464) )

HSP 1 Score: 216.5 bits (550), Expect = 2.1e-56
Identity = 109/155 (70.32%), Postives = 128/155 (82.58%), Query Frame = 0


Query: 60  LNATLRSPKGFGPAPR--KRTKKPK------TEGDGEEESEEDEEDEEEASVIPEVVTNR 119
           L+AT+ SPKGFGP P+  K++KKPK       + D E+E ++DEEDE E  VIPE+VTNR
Sbjct: 60  LHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNR 119

Query: 120 MISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVS 179
           MISRMGF+VG+PL IGLLFFPFFYYLKV LK+DVP+WVP IVSF FFG+AL GVSYGIVS
Sbjct: 120 MISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVS 179

Query: 180 SSWDPMREGSLLGWNEAQKNWPVFWQSIWSGGSNK 207
           SSWDP+REGSLLGWNEA+KNWPVFWQS W+    +
Sbjct: 180 SSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of Lag0017239 vs. TAIR 10
Match: AT5G52780.1 (Protein of unknown function (DUF3464) )

HSP 1 Score: 68.9 bits (167), Expect = 5.3e-12
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 89  EESEEDEEDEEEASVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSW 148
           E+    + D E+   IP+ V  RM+ R+  SVG PL +G+        LK     DVP W
Sbjct: 57  EKPGRPDPDPEDDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLW 116

Query: 149 VPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQ 198
           VP + +   FGS+ LG++YG +S++ DP +  SL G  EA++NW   W+
Sbjct: 117 VPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165

The following BLAST results are available for this feature:

BLAST of Lag0017239 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540526.1	2.7e-90	84.51	protein PAM68, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023005760.1	5.0e-89	84.51	protein PAM68, chloroplastic [Cucurbita maxima]	[more]
XP_022949106.1	2.5e-88	83.96	protein PAM68, chloroplastic [Cucurbita moschata]	[more]
KAG6596699.1	3.3e-88	83.57	Protein PAM68, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022145390.1	1.0e-86	82.21	protein PAM68, chloroplastic [Momordica charantia]	[more]

BLAST of Lag0017239 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49668	2.9e-55	70.32	Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1	[more]
Q9LTD9	7.5e-11	37.61	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 ...	[more]

BLAST of Lag0017239 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYA4	2.4e-89	84.51	protein PAM68, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498663 PE=4 SV...	[more]
A0A6J1GB37	1.2e-88	83.96	protein PAM68, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452558 PE=4 ...	[more]
A0A6J1CUC6	5.1e-87	82.21	protein PAM68, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014847 PE=4...	[more]
A0A1S3BKY8	1.5e-83	79.36	protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]
A0A0A0L507	1.7e-82	79.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1	[more]

BLAST of Lag0017239 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19100.1	2.1e-56	70.32	Protein of unknown function (DUF3464)	[more]
AT5G52780.1	5.3e-12	37.61	Protein of unknown function (DUF3464)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	PAM68-like	PFAM	PF11947	DUF3464	coord: 75..198 e-value: 2.0E-50 score: 170.4
IPR021855	PAM68-like	PANTHER	PTHR34575	PROTEIN PAM68, CHLOROPLASTIC	coord: 28..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..102
None	No IPR available	PANTHER	PTHR34575:SF1	PROTEIN PAM68, CHLOROPLASTIC	coord: 28..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017239.1	Lag0017239.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0016021	integral component of membrane