Lag0017229 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017229
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionELL-associated factor 1-like
Locationchr5: 1193814 .. 1194179 (-)
RNA-Seq ExpressionLag0017229
SyntenyLag0017229
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAGAGGAAATCGCCAATGGTGTTCCGTCTCAAGAAGACATGGTTCAAGCTCACTGCATTTCTCCGCCGCCGGAGACCTTCCCGCCGGCTGCGCTCATTCGGTCGCGACGGCCGGACGCGAGGACTGCGGACTTTCTTGGAAGATGAGACAATTGTCCAGAATTCTACTGTGAGAAGGCTTGAACGTGTTTCGAGTTTGAACTATGGAAGAAATTCCGAGGACGACGTCGATACGCGAGCTCAGGTATTCATCGACAATTTTCGCCGTCATTTGATGTTAGAAAGACAAATCTCTTTGCGATTGAGGTACTGTAGAACTAATAGCTCCGAATCGGAGTATGATGAGAGATCGCCGCCGTGA

mRNA sequence

ATGGCCGAGAGGAAATCGCCAATGGTGTTCCGTCTCAAGAAGACATGGTTCAAGCTCACTGCATTTCTCCGCCGCCGGAGACCTTCCCGCCGGCTGCGCTCATTCGGTCGCGACGGCCGGACGCGAGGACTGCGGACTTTCTTGGAAGATGAGACAATTGTCCAGAATTCTACTGTGAGAAGGCTTGAACGTGTTTCGAGTTTGAACTATGGAAGAAATTCCGAGGACGACGTCGATACGCGAGCTCAGGTATTCATCGACAATTTTCGCCGTCATTTGATGTTAGAAAGACAAATCTCTTTGCGATTGAGGTACTGTAGAACTAATAGCTCCGAATCGGAGTATGATGAGAGATCGCCGCCGTGA

Coding sequence (CDS)

ATGGCCGAGAGGAAATCGCCAATGGTGTTCCGTCTCAAGAAGACATGGTTCAAGCTCACTGCATTTCTCCGCCGCCGGAGACCTTCCCGCCGGCTGCGCTCATTCGGTCGCGACGGCCGGACGCGAGGACTGCGGACTTTCTTGGAAGATGAGACAATTGTCCAGAATTCTACTGTGAGAAGGCTTGAACGTGTTTCGAGTTTGAACTATGGAAGAAATTCCGAGGACGACGTCGATACGCGAGCTCAGGTATTCATCGACAATTTTCGCCGTCATTTGATGTTAGAAAGACAAATCTCTTTGCGATTGAGGTACTGTAGAACTAATAGCTCCGAATCGGAGTATGATGAGAGATCGCCGCCGTGA

Protein sequence

MAERKSPMVFRLKKTWFKLTAFLRRRRPSRRLRSFGRDGRTRGLRTFLEDETIVQNSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLMLERQISLRLRYCRTNSSESEYDERSPP
Homology
BLAST of Lag0017229 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.8 bits (382), Expect = 3.9e-33
Identity = 84/125 (67.20%), Postives = 101/125 (80.80%), Query Frame = 0

Query: 1   MAERKSPMVFRLKKTWFKLTAFLR----RRRPSRRLRSFGRDGRTRGLRTFLEDETIVQN 60
           MA++KSP++FRLKK+  KLTAFLR    RR+ SRRLRSFG D RT GLR+FLEDE IV+N
Sbjct: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVEN 60

Query: 61  STVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLMLERQISLRLRYCRTNSSESEYD 120
            +VR+LER SS +Y  N EDDVD R+Q+FID F R L LERQISL+LRYCR NSSE+E +
Sbjct: 61  RSVRKLERASSASY-VNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESE 120

Query: 121 ERSPP 122
           E+SPP
Sbjct: 121 EKSPP 124

BLAST of Lag0017229 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-29
Identity = 82/129 (63.57%), Postives = 96/129 (74.42%), Query Frame = 0

Query: 1   MAERKSPMVFRLKKTWFKLTAFLR--------RRRPSRRLRSFGRDGRTRGLRTFLEDET 60
           MAE+KSP++ RLKK   K+TA LR        RRRPS RLRSF    RT GLR+FLEDE 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 61  IVQNSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLMLERQISLRLRYCRTNSSE 120
           I +N ++RRLER SSL YG N+EDDVD R+Q+FIDNF R L LERQISL+LRY R NSS 
Sbjct: 61  IGENCSMRRLERASSLRYG-NAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSG 120

Query: 121 SEYDERSPP 122
           +E +ERSPP
Sbjct: 121 TEDEERSPP 128

BLAST of Lag0017229 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 77/125 (61.60%), Postives = 92/125 (73.60%), Query Frame = 0

Query: 1   MAERKSPMVFRLKKTWFKLTAFLRR----RRPSRRLRSFGRDGRTRGLRTFLEDETIVQN 60
           MAE  +P+V R+KK   KLTAF+R     R PSRR+RSF  DGRT GLR+ L DE+IV+ 
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60

Query: 61  STVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLMLERQISLRLRYCRTNSSESEYD 120
            +VR+LER  S   G + EDDVD RAQ+FIDNFRR LMLERQISL+LRY   NSSE +Y+
Sbjct: 61  CSVRKLERGESSRNG-SCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYE 120

Query: 121 ERSPP 122
            RSPP
Sbjct: 121 ARSPP 124

BLAST of Lag0017229 vs. NCBI nr
Match: KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-27
Identity = 76/125 (60.80%), Postives = 91/125 (72.80%), Query Frame = 0

Query: 1   MAERKSPMVFRLKKTWFKLTAFLRR----RRPSRRLRSFGRDGRTRGLRTFLEDETIVQN 60
           MAE  +P+V R+KK   KLTAF+R     R PSRR+RSF  DGRT GLR+ L DE+IV+ 
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60

Query: 61  STVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLMLERQISLRLRYCRTNSSESEYD 120
            +VR+LER  S   G + EDDVD RAQ+FIDNFRR LMLERQISL+L Y   NSSE +Y+
Sbjct: 61  CSVRKLERGESSRNG-SCEDDVDQRAQIFIDNFRRQLMLERQISLKLMYYGINSSEIDYE 120

Query: 121 ERSPP 122
            RSPP
Sbjct: 121 ARSPP 124

BLAST of Lag0017229 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 9.6e-24
Identity = 73/126 (57.94%), Postives = 89/126 (70.63%), Query Frame = 0

Query: 1   MAERKSPMVFRLKKTWFKLTAFLR----RRRPSRRLRSFGRDGRTRGLRTFLEDET-IVQ 60
           MAE+KSPM  RLKK   KLTA +R     RR S+RL SF  D R  G+R  LED++ I +
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 61  NSTVRRLERVSSLNYGRNSEDDVDTRAQVFIDNFRRHLMLERQISLRLRYCRTNSSESEY 120
           NS  R+LER SS  YG   E+DVD RA++FI+NFRR L LERQISL+LRY R NS E+EY
Sbjct: 61  NSFARKLERASSSRYG-GYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 DERSPP 122
           ++ SPP
Sbjct: 121 EQISPP 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6596691.13.9e-3367.20hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022145292.13.4e-2963.57uncharacterized protein LOC111014780 [Momordica charantia][more]
KAG7015798.11.1e-2761.60hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577759.15.5e-2760.80hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0052985.19.6e-2457.94hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 75..107
e-value: 1.1E-8
score: 34.5
NoneNo IPR availablePANTHERPTHR33098:SF64OS08G0448100 PROTEINcoord: 13..114
NoneNo IPR availablePANTHERPTHR33098COTTON FIBER (DUF761)coord: 13..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017229.1Lag0017229.1mRNA