Lag0017193 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017193
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 874828 .. 875265 (-)
RNA-Seq ExpressionLag0017193
SyntenyLag0017193
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGGGATTGAAAAGTGAAGAATCTAAAATGGCAAGAAATTGGACAATGACAAAGAAGCTAGAATCAAAGGAGACTAATGGAACATTACAATTAGATGACAAGAAATTGAATGTTTACAAGAATTTACTTCATTTTTGGCCAAGAAGCAAAGTAAACCACCTCATGACAAACATAGAGAATGGAGTGACAATCACTTTGTTTGATGTGAGTAGAAATGAAACCATAAAAACAATCATGAAGTGGGTTGCCTTTGAAGAATTCCATATTGAATGGGACTTCCAAAGCAAAGGGTATATGGTAGGAGATGAAATTTGGATGCATTGGGATAGTAACAAGAAACGACTGTGTTACGATGTTCTTACTATTTCTGCTCTTAGAACTTATCCACAAATGATCGATAATGTTGCAAGTAGTTATTATCTGGATCAGTGA

mRNA sequence

ATGGACAAGGGATTGAAAAGTGAAGAATCTAAAATGGCAAGAAATTGGACAATGACAAAGAAGCTAGAATCAAAGGAGACTAATGGAACATTACAATTAGATGACAAGAAATTGAATGTTTACAAGAATTTACTTCATTTTTGGCCAAGAAGCAAAGTAAACCACCTCATGACAAACATAGAGAATGGAGTGACAATCACTTTGTTTGATGTGAGTAGAAATGAAACCATAAAAACAATCATGAAGTGGGTTGCCTTTGAAGAATTCCATATTGAATGGGACTTCCAAAGCAAAGGGTATATGGTAGGAGATGAAATTTGGATGCATTGGGATAGTAACAAGAAACGACTGTGTTACGATGTTCTTACTATTTCTGCTCTTAGAACTTATCCACAAATGATCGATAATGTTGCAAGTAGTTATTATCTGGATCAGTGA

Coding sequence (CDS)

ATGGACAAGGGATTGAAAAGTGAAGAATCTAAAATGGCAAGAAATTGGACAATGACAAAGAAGCTAGAATCAAAGGAGACTAATGGAACATTACAATTAGATGACAAGAAATTGAATGTTTACAAGAATTTACTTCATTTTTGGCCAAGAAGCAAAGTAAACCACCTCATGACAAACATAGAGAATGGAGTGACAATCACTTTGTTTGATGTGAGTAGAAATGAAACCATAAAAACAATCATGAAGTGGGTTGCCTTTGAAGAATTCCATATTGAATGGGACTTCCAAAGCAAAGGGTATATGGTAGGAGATGAAATTTGGATGCATTGGGATAGTAACAAGAAACGACTGTGTTACGATGTTCTTACTATTTCTGCTCTTAGAACTTATCCACAAATGATCGATAATGTTGCAAGTAGTTATTATCTGGATCAGTGA

Protein sequence

MDKGLKSEESKMARNWTMTKKLESKETNGTLQLDDKKLNVYKNLLHFWPRSKVNHLMTNIENGVTITLFDVSRNETIKTIMKWVAFEEFHIEWDFQSKGYMVGDEIWMHWDSNKKRLCYDVLTISALRTYPQMIDNVASSYYLDQ
Homology
BLAST of Lag0017193 vs. NCBI nr
Match: KAG6575830.1 (hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-20
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 0

Query: 12  MARNWTMTKKLESKETNGTLQL--DDKKLNVYKNLLHFWPRSKVNHLMTNIENGVTITLF 71
           MA +WTM KKLE  + NG LQL  DD+  ++  NL ++WPRSKV  L   + + V I L+
Sbjct: 1   MAGDWTMIKKLEDADMNGLLQLREDDEDADIRANLFNWWPRSKVRDLKRVVGSEVRIILY 60

Query: 72  DVSRNETIKTIMKWVAFEEFHIEWDFQSKGYMVGDEIWMHWDSNKKRLCYDVLTISALRT 131
           DV+ ++ I+T M+W+    +HIEWD Q+K Y  GD++ M WD    RL Y ++       
Sbjct: 61  DVNMDQAIQTTMRWLGMARYHIEWDIQNKPYSSGDDMLMFWDLRYNRLAYKIIQ----TY 120

Query: 132 YPQMIDNVASSY 142
           YP++ D  + +Y
Sbjct: 121 YPEISDACSGTY 128

BLAST of Lag0017193 vs. NCBI nr
Match: KAG6575832.1 (hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 7.3e-18
Identity = 54/131 (41.22%), Postives = 73/131 (55.73%), Query Frame = 0

Query: 12  MARNWTMTKKLESKETNGTLQL--DDKKLNVYKNLLHFWPRSKVNHLMTNIENGVTITLF 71
           M   WTM KKL+  + NG LQL  DD   ++  NL  +W RSKV  L   I N   ITLF
Sbjct: 1   MTERWTMIKKLQEADMNGLLQLREDDVDTDINTNLFRWWSRSKVRDLKKQIGNEAKITLF 60

Query: 72  DVSRNETIKTIMKWVAFEEFHIEWDFQSKGYMVGDEIWMHWDSNKKRLCYDVLTISALRT 131
           D + NE + T ++W+    +HIEWD ++K Y  G ++ M WD    RL Y VL I     
Sbjct: 61  DENTNEVMHTTIRWLGTPRYHIEWDVKNKPYASGQDMLMGWDLKYNRLAYKVLQI----P 120

Query: 132 YPQMIDNVASS 141
           +P+M D  +S+
Sbjct: 121 FPEMSDAGSST 127

BLAST of Lag0017193 vs. NCBI nr
Match: KAE8651896.1 (hypothetical protein Csa_006487 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 5.4e-05
Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 0

Query: 16  WTMTKKLESKETNGTLQLDDKKLNVYKN-LLHFWPRSKVNHLMTNIENGVTITLFDVSRN 75
           W++T+ L+  +  G L+LD  ++    + LL+++P                IT+FDV   
Sbjct: 8   WSITETLDGSKELG-LKLDAAEMLFESSFLLNYFPEQ---------TGKAKITMFDVVSE 67

Query: 76  ETIK-TIMKWVAFEEFHIEW--DF-QSKGYMVGDEIWMHWDSNKKRLCYDVLTISALRTY 135
           ++ K T+ +  A  +F I W  DF ++  Y  GDEI ++W+   K LC++++  SALRTY
Sbjct: 68  KSFKATMERKSASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTY 127

Query: 136 PQMIDNVASSYY 143
           PQM     S  Y
Sbjct: 128 PQMSGQYRSYNY 129

BLAST of Lag0017193 vs. NCBI nr
Match: KAE8651895.1 (hypothetical protein Csa_006112 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 5.4e-05
Identity = 46/140 (32.86%), Postives = 75/140 (53.57%), Query Frame = 0

Query: 8   EESKMARNWTMTKKLESKETNGTLQLDDKKLNVYKN-LLHFWPRSKVNHLMTNIENGVTI 67
           E+SK  + W++T+ L+  +  G L+LD  ++    + LL+++P                I
Sbjct: 2   EQSK--KPWSITETLDGSKELG-LKLDAAEMLFESSFLLNYFPEQ---------SGKAKI 61

Query: 68  TLFDVSRNETIK-TIMKWVAFEEFHIEW--DF-QSKGYMVGDEIWMHWDSNKKRLCYDVL 127
           T+FDV   ++ K T+ +  A  +F I W  DF ++  Y  GDEI ++W+   K LC++++
Sbjct: 62  TMFDVVSEKSFKATMERKSASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIV 121

Query: 128 TISALRTYPQMIDNVASSYY 143
             SALRTYPQM     S  Y
Sbjct: 122 RCSALRTYPQMSGQYHSYNY 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575830.13.5e-2040.91hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575832.17.3e-1841.22hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8651896.15.4e-0532.58hypothetical protein Csa_006487 [Cucumis sativus][more]
KAE8651895.15.4e-0532.86hypothetical protein Csa_006112 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017193.1Lag0017193.1mRNA