Lag0017136 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017136
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionHigh mobility group protein
Locationchr5: 455674 .. 456770 (+)
RNA-Seq ExpressionLag0017136
SyntenyLag0017136
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAGAAGGCGGATACCAAGTGAGTTCTTCGATAGCTTATGATTTTTTGTGCGTTTTGTGTGATAGTATGTTTAGGAGTAGGCGGTTCGATCATACGCGTGCGCTGTTGTTATTTTGTTTTCAATCTGTTCATAGTGTGTTTTTTTTTTTGGTGCGCGTTGTTATTTAATTTTTGCTAGGTTGAAGAGCAAAAGTGCTGGTGCTAGTAAGAAATCAGCGAAGGCTGCGAAAGATCCTAACAAGCCAAAGAGGCCTGCCAGTGCTTTCTTTGTTTTCATGTATCTCTCTTTCTCTCTGGCTTATCCTGCTTTTTTTAAAATTTTCAGATCCGTGTGCTTTTACCGTCTAGGTCATTTTTCGTACCGAATTTTTACTGTTTGATGATTTTTGTTCATGAATATGAAGGGAGGAGTTCAGGAAGCAGTATAAGAAGGAGCATCCTAATAACAAATCTGTCGCCGCTGTAAGTGATTCTAGATCTGCGTACTGTTTTTCTTCTCGTTATTCTTTACGAAATTCATAGAGTTTTTTAACGCGTGCTCCTTTGGTCAAATAAACAGGTTGGAAAGGCCGGCGGTGACAAATGGAAGTCAATGTCAGACGCTGTAAGTAATTGGATTGAAATTGGTATTCTTTTTTCCTGTGTTGCGGAAATTGTATCAAATTACATGTTCTCATCTGTTTCCTCTTCTGTTTTTCAGGAGAAAGCGCCTTACATAAACAAGGCTGAGAAAAGGAAGACCGAGTACAATAAGAGCATGCAGGCTTATAATAAGAGAATTGTATGCTCAGTTATCCCTATTTCATGTCCAATATATATTCTCACATCCATTAATCTCATCCACGTTAATTGTGTGCTTTTCTGTCAGGCGGAAGGAGGTAATGGGGCTGAAGAAGAAGAATCTGATAAATCCAAATCAGAAGTCAATGATGATGAAGAGGATGACGATGAGAGTGGAGAGGTTTGTGAACAAGTTTTGCTTGAAGTATGTATTTCGAGCTAGAAAACGAAGTAGTAAATGGCTGATGATCTTTGATTTTGACATTGCAGGAGGAAGATGATGAGTAA

mRNA sequence

ATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAGAAGGCGGATACCAAGTTGAAGAGCAAAAGTGCTGGTGCTAGTAAGAAATCAGCGAAGGCTGCGAAAGATCCTAACAAGCCAAAGAGGCCTGCCAGTGCTTTCTTTGTTTTCATGGAGGAGTTCAGGAAGCAGTATAAGAAGGAGCATCCTAATAACAAATCTGTCGCCGCTGTTGGAAAGGCCGGCGGTGACAAATGGAAGTCAATGTCAGACGCTGAGAAAGCGCCTTACATAAACAAGGCTGAGAAAAGGAAGACCGAGTACAATAAGAGCATGCAGGCTTATAATAAGAGAATTGCGGAAGGAGGTAATGGGGCTGAAGAAGAAGAATCTGATAAATCCAAATCAGAAGTCAATGATGATGAAGAGGATGACGATGAGAGTGGAGAGGAGGAAGATGATGAGTAA

Coding sequence (CDS)

ATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAGAAGGCGGATACCAAGTTGAAGAGCAAAAGTGCTGGTGCTAGTAAGAAATCAGCGAAGGCTGCGAAAGATCCTAACAAGCCAAAGAGGCCTGCCAGTGCTTTCTTTGTTTTCATGGAGGAGTTCAGGAAGCAGTATAAGAAGGAGCATCCTAATAACAAATCTGTCGCCGCTGTTGGAAAGGCCGGCGGTGACAAATGGAAGTCAATGTCAGACGCTGAGAAAGCGCCTTACATAAACAAGGCTGAGAAAAGGAAGACCGAGTACAATAAGAGCATGCAGGCTTATAATAAGAGAATTGCGGAAGGAGGTAATGGGGCTGAAGAAGAAGAATCTGATAAATCCAAATCAGAAGTCAATGATGATGAAGAGGATGACGATGAGAGTGGAGAGGAGGAAGATGATGAGTAA

Protein sequence

MKGGKSKAAPKKADTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDEEDDDESGEEEDDE
Homology
BLAST of Lag0017136 vs. NCBI nr
Match: XP_038904814.1 (HMG1/2-like protein [Benincasa hispida])

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-62
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0

Query: 1   MKGGKSKAAPKKADTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKK DTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDEEDDDESGEEEDDE 147
           ESDKSKSEVNDD+EDDDESGEE+DDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEEDDDE 146

BLAST of Lag0017136 vs. NCBI nr
Match: NP_001267705.1 (HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-like protein [Cucumis melo] >AAY26151.1 high mobility group protein [Cucumis sativus] >KAE8649989.1 hypothetical protein Csa_010903 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 3.7e-62
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0

Query: 1   MKGGKSKAAPKKADTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKK DTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDEEDDDESGEEEDDE 147
           ESDKSKSEVNDD+EDDDESGE+EDDE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGEDEDDE 146

BLAST of Lag0017136 vs. NCBI nr
Match: XP_022145438.1 (HMG1/2-like protein [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 4.5e-60
Identity = 138/146 (94.52%), Postives = 143/146 (97.95%), Query Frame = 0

Query: 1   MKGGKSKAAPKKADTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKK DTKLKSKS GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 92  MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 151

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKWKSMS+AEKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEE
Sbjct: 152 PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 211

Query: 121 ESDKSKSEVNDDEEDDDESGEEEDDE 147
           ESDKSKSEVNDD+++DDESGEEEDDE
Sbjct: 212 ESDKSKSEVNDDDDEDDESGEEEDDE 237

BLAST of Lag0017136 vs. NCBI nr
Match: KAG6596275.1 (hypothetical protein SDJN03_09455, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 133/146 (91.10%), Postives = 145/146 (99.32%), Query Frame = 0

Query: 1   MKGGKSKAAPKKADTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKAD+KLK+KSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 51  MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 110

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKW+S+SDAEKAPY++KAEK+KTEYNK+MQAYNK++AEG NGAEEE
Sbjct: 111 PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 170

Query: 121 ESDKSKSEVNDDEEDDDESGEEEDDE 147
           ESDKSKSEVND+EEDDDESGEE+DDE
Sbjct: 171 ESDKSKSEVNDNEEDDDESGEEDDDE 196

BLAST of Lag0017136 vs. NCBI nr
Match: XP_022947889.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023539853.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7027826.1 hypothetical protein SDJN02_09003 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 133/146 (91.10%), Postives = 145/146 (99.32%), Query Frame = 0

Query: 1   MKGGKSKAAPKKADTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKAD+KLK+KSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKADSKLKTKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           PNNKSVAAVGKAGGDKW+S+SDAEKAPY++KAEK+KTEYNK+MQAYNK++AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWRSLSDAEKAPYVSKAEKKKTEYNKTMQAYNKKLAEGSNGAEEE 120

Query: 121 ESDKSKSEVNDDEEDDDESGEEEDDE 147
           ESDKSKSEVND+EEDDDESGEE+DDE
Sbjct: 121 ESDKSKSEVNDNEEDDDESGEEDDDE 146

BLAST of Lag0017136 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-39
Identity = 100/152 (65.79%), Postives = 120/152 (78.95%), Query Frame = 0

Query: 1   MKGGKSKAAPKKADTKLKSKSAGASKKS------AKAAKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSK   K+AD KL     GA+ K+       KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  QYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGG 120
            + KEHP NK+V+AVGKA G KWK+MSDAEKAPY+ K+EKRK EY K+M+AYNK+ AEG 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NGAEEEESDKSKSEVNDDEEDDDESGEEEDDE 147
            G +EEES+KS SEVND+++D++ SGEEEDD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

BLAST of Lag0017136 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-38
Identity = 101/147 (68.71%), Postives = 120/147 (81.63%), Query Frame = 0

Query: 1   MKGGKSKAAPKKADTKLK-SKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKE 60
           MKGGKSKA   K+D KL   K A  +KK+ KA KDPNKPKRP SAFFVFME+FRK YK++
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 61  HPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEE 120
           HPNNKSVA VGKAGGDKWK ++ AEKAP+I+KAEKRK EY K++QAYNK+ A G   AEE
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEE 120

Query: 121 EESDKSKSEVNDDEEDDDESGEEEDDE 147
           EESDKS+SEVNDD+ED D SGE++ ++
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGEDDSED 142

BLAST of Lag0017136 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-34
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 0

Query: 1   MKGGKSKAAPKKADTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSKA  +     +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVAAVGKAGG+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDEEDDDESGEEEDDE 147
           ESDKS SEVND+++ +D S EEEDD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 141

BLAST of Lag0017136 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.6e-34
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 0

Query: 1   MKGGKSKAAPKKADTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120
           P NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDEEDDDESGEEEDDE 147
           ESDKS SEVND+++ +D S EEEDD+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEEEDDD 144

BLAST of Lag0017136 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-32
Identity = 93/152 (61.18%), Postives = 119/152 (78.29%), Query Frame = 0

Query: 1   MKGGKSKAAPKKADTKLKSKSAGAS-----KKSAKA--AKDPNKPKRPASAFFVFMEEFR 60
           MKGGKSK   KKA+TKL     GA+     KK AK    KDPNKPKRP SAFFVFM +FR
Sbjct: 1   MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60

Query: 61  KQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 120
           +QYKK+HPNNKSVAAVGKA G++WKS+S+ EKAPY+++A K+K EY  ++QAYNK++ EG
Sbjct: 61  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EG 120

Query: 121 GNGAEEEESDKSKSEVNDDEEDDDESGEEEDD 146
            +  +EE SDKSKSEVND++ED+++  +E+DD
Sbjct: 121 KD--DEEGSDKSKSEVNDEDEDEEDEEDEDDD 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904814.11.3e-6297.95HMG1/2-like protein [Benincasa hispida][more]
NP_001267705.13.7e-6297.26HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-lik... [more]
XP_022145438.14.5e-6094.52HMG1/2-like protein [Momordica charantia][more]
KAG6596275.11.1e-5891.10hypothetical protein SDJN03_09455, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022947889.11.1e-5891.10HMG1/2-like protein [Cucurbita moschata] >XP_023539853.1 HMG1/2-like protein [Cu... [more]
Match NameE-valueIdentityDescription
P265852.1e-3965.79HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1[more]
P406191.3e-3868.71HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1[more]
P930472.6e-3463.70High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV... [more]
O495967.6e-3461.64High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV... [more]
P406201.1e-3261.18HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 89..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..146
NoneNo IPR availablePANTHERPTHR46261:SF18HIGH MOBILITY GROUP B PROTEIN 4-RELATEDcoord: 1..145
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 38..104
e-value: 9.1916E-17
score: 68.0381
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 37..108
e-value: 4.4E-27
score: 106.0
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 38..107
e-value: 2.5E-23
score: 82.3
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 38..107
score: 20.542439
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 33..110
e-value: 5.2E-27
score: 96.1
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 30..111
IPR031061High mobility group protein HMGB, plantPANTHERPTHR46261HIGH MOBILITY GROUP B PROTEIN 4-RELATEDcoord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017136.1Lag0017136.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006333 chromatin assembly or disassembly
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0030527 structural constituent of chromatin