Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCAATCCTCTCTAATTCTCTCTTCCTTTCTCACAATCATTCTCTCTTCTCTCTTGGCTCCGACCGCCGCCGCTGAGACCGCTTACCATCATCACCACCGCCATTGCCACCTCCGATCCCTCCACTTTTCCCTCTTCCAACACGAAACGATCAACAAAACTGGCTACATCATCGTGTCGGGAGTGGCTGGCCCCGGTGTGAGCCAAACCACCACCCCATTTGGCACCATGTTTGTTTTTCAAGACCCTTTGACCACCACTGCCGACCGAGCATCAAAGCTGGTCGGCACGTCGGAGGGAACCTCCATAACCTCAGGCCTCGATGGTTTGCGAAGCATTAGCATAGCCAAGATTAGCTTGCGTTTGAGGCACCATACAGGTTCTCTCTCGATCGTTGGTGGGACACATAATGTTAAACCGTCGAATCACCCGATCGTCGGAGGGACCGGAGATTTCTTGTTCGTGCAAGGCTATGTGACGTCGTCTCCAGTGGATCTCATCGGCATCACCGTGGTTTACAAGTTGGAGTTTCATCTTTACTGGCCGCCCTATGCATAA
mRNA sequence
ATGCCTCAATCCTCTCTAATTCTCTCTTCCTTTCTCACAATCATTCTCTCTTCTCTCTTGGCTCCGACCGCCGCCGCTGAGACCGCTTACCATCATCACCACCGCCATTGCCACCTCCGATCCCTCCACTTTTCCCTCTTCCAACACGAAACGATCAACAAAACTGGCTACATCATCGTGTCGGGAGTGGCTGGCCCCGGTGTGAGCCAAACCACCACCCCATTTGGCACCATGTTTGTTTTTCAAGACCCTTTGACCACCACTGCCGACCGAGCATCAAAGCTGGTCGGCACGTCGGAGGGAACCTCCATAACCTCAGGCCTCGATGGTTTGCGAAGCATTAGCATAGCCAAGATTAGCTTGCGTTTGAGGCACCATACAGGTTCTCTCTCGATCGTTGGTGGGACACATAATGTTAAACCGTCGAATCACCCGATCGTCGGAGGGACCGGAGATTTCTTGTTCGTGCAAGGCTATGTGACGTCGTCTCCAGTGGATCTCATCGGCATCACCGTGGTTTACAAGTTGGAGTTTCATCTTTACTGGCCGCCCTATGCATAA
Coding sequence (CDS)
ATGCCTCAATCCTCTCTAATTCTCTCTTCCTTTCTCACAATCATTCTCTCTTCTCTCTTGGCTCCGACCGCCGCCGCTGAGACCGCTTACCATCATCACCACCGCCATTGCCACCTCCGATCCCTCCACTTTTCCCTCTTCCAACACGAAACGATCAACAAAACTGGCTACATCATCGTGTCGGGAGTGGCTGGCCCCGGTGTGAGCCAAACCACCACCCCATTTGGCACCATGTTTGTTTTTCAAGACCCTTTGACCACCACTGCCGACCGAGCATCAAAGCTGGTCGGCACGTCGGAGGGAACCTCCATAACCTCAGGCCTCGATGGTTTGCGAAGCATTAGCATAGCCAAGATTAGCTTGCGTTTGAGGCACCATACAGGTTCTCTCTCGATCGTTGGTGGGACACATAATGTTAAACCGTCGAATCACCCGATCGTCGGAGGGACCGGAGATTTCTTGTTCGTGCAAGGCTATGTGACGTCGTCTCCAGTGGATCTCATCGGCATCACCGTGGTTTACAAGTTGGAGTTTCATCTTTACTGGCCGCCCTATGCATAA
Protein sequence
MPQSSLILSSFLTIILSSLLAPTAAAETAYHHHHRHCHLRSLHFSLFQHETINKTGYIIVSGVAGPGVSQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGTSITSGLDGLRSISIAKISLRLRHHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVVYKLEFHLYWPPYA
Homology
BLAST of Lag0017133 vs. NCBI nr
Match:
KAG7015856.1 (Dirigent protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 311.6 bits (797), Expect = 4.5e-81
Identity = 161/187 (86.10%), Postives = 168/187 (89.84%), Query Frame = 0
Query: 2 PQSSLILSSFLTIILSSLLAPTAAAE--TAYHHHHRHCHLRSLHFSLFQHETINKTGYII 61
P SLILSS T+ILSSLL+ A AE A+H HH H HLRSLHFSLFQHETINKTGY I
Sbjct: 5 PPPSLILSSLFTLILSSLLSSPALAEPNAAHHPHHPHRHLRSLHFSLFQHETINKTGYFI 64
Query: 62 VSGVAGPGVSQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGTSITSGLDGLRSISIAKI 121
V GVAGPGVSQTTTPFGTMFVF DPLTT DRASKLVGTSEGTSITS LDGLRS+SIAKI
Sbjct: 65 VPGVAGPGVSQTTTPFGTMFVFHDPLTTAPDRASKLVGTSEGTSITSSLDGLRSLSIAKI 124
Query: 122 SLRLRHHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVVYKLEFH 181
SLRLR+HTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDL+GITVVYKLEFH
Sbjct: 125 SLRLRNHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLVGITVVYKLEFH 184
Query: 182 LYWPPYA 187
+YWPPYA
Sbjct: 185 IYWPPYA 191
BLAST of Lag0017133 vs. NCBI nr
Match:
KAG6577817.1 (Dirigent protein 2, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 311.6 bits (797), Expect = 4.5e-81
Identity = 161/187 (86.10%), Postives = 168/187 (89.84%), Query Frame = 0
Query: 2 PQSSLILSSFLTIILSSLLAPTAAAE--TAYHHHHRHCHLRSLHFSLFQHETINKTGYII 61
P SLILSS T+ILSSLL+ A AE A+H HH H HLRSLHFSLFQHETINKTGY I
Sbjct: 19 PPPSLILSSLFTLILSSLLSSPALAEPNAAHHPHHPHRHLRSLHFSLFQHETINKTGYFI 78
Query: 62 VSGVAGPGVSQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGTSITSGLDGLRSISIAKI 121
V GVAGPGVSQTTTPFGTMFVF DPLTT DRASKLVGTSEGTSITS LDGLRS+SIAKI
Sbjct: 79 VPGVAGPGVSQTTTPFGTMFVFHDPLTTAPDRASKLVGTSEGTSITSSLDGLRSLSIAKI 138
Query: 122 SLRLRHHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVVYKLEFH 181
SLRLR+HTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDL+GITVVYKLEFH
Sbjct: 139 SLRLRNHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLVGITVVYKLEFH 198
Query: 182 LYWPPYA 187
+YWPPYA
Sbjct: 199 IYWPPYA 205
BLAST of Lag0017133 vs. NCBI nr
Match:
XP_023007642.1 (dirigent protein 19-like [Cucurbita maxima])
HSP 1 Score: 308.1 bits (788), Expect = 5.0e-80
Identity = 161/184 (87.50%), Postives = 166/184 (90.22%), Query Frame = 0
Query: 5 SLILSSFLTIILSSLLAPTAAAETAYHHH--HRHCHLRSLHFSLFQHETINKTGYIIVSG 64
SLILSS T+ILSSLL+ A AE HH H H HLRSLHFSLFQHETINKTGY IV G
Sbjct: 4 SLILSSLFTLILSSLLSSPALAEPNATHHPRHPHRHLRSLHFSLFQHETINKTGYFIVPG 63
Query: 65 VAGPGVSQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGTSITSGLDGLRSISIAKISLR 124
VAGPGVSQTTTPFGTMFVF DPLTT DRASKLVGTSEGTSITSGLDGLRSISIAKISLR
Sbjct: 64 VAGPGVSQTTTPFGTMFVFHDPLTTAPDRASKLVGTSEGTSITSGLDGLRSISIAKISLR 123
Query: 125 LRHHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVVYKLEFHLYW 184
LR+HTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDL+GITVVYKLEFH+YW
Sbjct: 124 LRNHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLVGITVVYKLEFHIYW 183
Query: 185 PPYA 187
PPYA
Sbjct: 184 PPYA 187
BLAST of Lag0017133 vs. NCBI nr
Match:
XP_023551883.1 (dirigent protein 11-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 307.4 bits (786), Expect = 8.6e-80
Identity = 161/193 (83.42%), Postives = 169/193 (87.56%), Query Frame = 0
Query: 2 PQSSLILSSFLTIILSSLLAPTAAAE-TAYHH-------HHRHCHLRSLHFSLFQHETIN 61
P SLILS+ T+ILSSLL+ A AE A HH HH H HLRSLHFSLFQHETIN
Sbjct: 19 PPPSLILSTLFTLILSSLLSSPALAEPNAAHHPHHPHHPHHPHLHLRSLHFSLFQHETIN 78
Query: 62 KTGYIIVSGVAGPGVSQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGTSITSGLDGLRS 121
KTGY IV GVAGPGVSQTTTPFGTMFVF+DPLTT DRASKLVGTSEGTSITS LDGLRS
Sbjct: 79 KTGYFIVPGVAGPGVSQTTTPFGTMFVFRDPLTTAPDRASKLVGTSEGTSITSSLDGLRS 138
Query: 122 ISIAKISLRLRHHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVV 181
+SIAKISLRLR+HTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDL+GITVV
Sbjct: 139 LSIAKISLRLRNHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLVGITVV 198
Query: 182 YKLEFHLYWPPYA 187
YKLEFH+YWPPYA
Sbjct: 199 YKLEFHIYWPPYA 211
BLAST of Lag0017133 vs. NCBI nr
Match:
XP_022923245.1 (dirigent protein 19-like [Cucurbita moschata])
HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 162/186 (87.10%), Postives = 167/186 (89.78%), Query Frame = 0
Query: 2 PQSSLILSSFLTIILSSLLAPTAAAE-TAYHHHHRHCHLRSLHFSLFQHETINKTGYIIV 61
P SLILSS T+ILSSLL+ A AE A HH HR HLRSLHFSLFQHETINKTGY IV
Sbjct: 20 PPPSLILSSLFTLILSSLLSSPALAEPNAAHHPHR--HLRSLHFSLFQHETINKTGYFIV 79
Query: 62 SGVAGPGVSQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGTSITSGLDGLRSISIAKIS 121
GVAGPGVSQTTTPFGTMFVF DPLTT DRASKLVGTSEGTSITS LDGLRS+SIAKIS
Sbjct: 80 PGVAGPGVSQTTTPFGTMFVFHDPLTTAPDRASKLVGTSEGTSITSSLDGLRSLSIAKIS 139
Query: 122 LRLRHHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVVYKLEFHL 181
LRLR+HTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVVYKLEFH+
Sbjct: 140 LRLRNHTGSLSIVGGTHNVKPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVVYKLEFHI 199
Query: 182 YWPPYA 187
YWPPYA
Sbjct: 200 YWPPYA 203
BLAST of Lag0017133 vs. ExPASy Swiss-Prot
Match:
Q9C523 (Dirigent protein 19 OS=Arabidopsis thaliana OX=3702 GN=DIR19 PE=2 SV=1)
HSP 1 Score: 52.8 bits (125), Expect = 5.0e-06
Identity = 45/160 (28.12%), Postives = 77/160 (48.12%), Query Frame = 0
Query: 6 LILSSFLTIILSSLLAPTAAAETAYHHHHRHCHLRSLHFSLFQHETINKTGYIIVSGVAG 65
LI S L ++L S+ T E+ + HH + + HF ++ H+ + VS +
Sbjct: 9 LISSRTLALVLISVTGET--LESNFLHHKKE---KLTHFRVYWHDIVTGQDSSSVSIMNP 68
Query: 66 PGVSQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGTSITSGLDGLRSISIAKISLRLRH 125
P T FG M + +PLT T +SK+VG ++G + + + + ++
Sbjct: 69 PKKYTGATGFGLMRMIDNPLTLTPKLSSKMVGRAQGFYAGTSKEEIGLLMAMNFAILDGK 128
Query: 126 HTGSLSIVGGTHNV--KPSNHPIVGGTGDFLFVQGYVTSS 164
+ GS V G ++V K P++GG+G F F +GYV +S
Sbjct: 129 YNGSTITVLGRNSVFDKVREMPVIGGSGLFRFARGYVQAS 163
BLAST of Lag0017133 vs. ExPASy Swiss-Prot
Match:
Q9FIG6 (Dirigent protein 1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=2 SV=1)
HSP 1 Score: 50.1 bits (118), Expect = 3.2e-05
Identity = 45/183 (24.59%), Postives = 81/183 (44.26%), Query Frame = 0
Query: 1 MPQSSLILSSFLTIILSSLLAPTAAAETAYHHHHRHCHLRSLHFSLFQHETINKTGYIIV 60
M + L+L L+ IL ++ TA + T + ++ LHF + H+ I+ V
Sbjct: 1 MAKRFLLLLPLLSSILLLAVSVTAYSTTTPYQGYKPEKFTHLHF--YFHDVISGDKPTAV 60
Query: 61 SGVAGPGVSQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGTSITSGLDGLRSISIAKIS 120
+ FG + + DPLT D +SK VG ++G ++ + + +
Sbjct: 61 KVAEARPTTTLNVKFGVIMIADDPLTEGPDPSSKEVGRAQGMYASTAMKDIVFTMVFNYV 120
Query: 121 LRLRHHTGSLSIVGGTHNV--KPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVVYKLEF 180
GS V G +++ K PI+GGTG F F +GY ++G+ V +E+
Sbjct: 121 FTAGEFNGSTIAVYGRNDIFSKVRELPIIGGTGAFRFARGYALPKTYKIVGLDAV--VEY 179
Query: 181 HLY 182
+++
Sbjct: 181 NVF 179
BLAST of Lag0017133 vs. ExPASy Swiss-Prot
Match:
Q84TH6 (Dirigent protein 23 OS=Arabidopsis thaliana OX=3702 GN=DIR23 PE=2 SV=1)
HSP 1 Score: 48.9 bits (115), Expect = 7.2e-05
Identity = 36/119 (30.25%), Postives = 56/119 (47.06%), Query Frame = 0
Query: 43 HFSLFQHETINKTGYIIVSGVAGPGVSQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGT 102
+ + H+T++ V G ++ T FG +F+ D LT TAD SKLVG ++G
Sbjct: 44 NLQFYFHDTLSGKNPTAVKVAQGTDTEKSPTLFGAVFMVDDALTETADPKSKLVGRAQGL 103
Query: 103 SITSGLDGLRSISIAKISLRLRHHTGS-LSIVGGTHNVKPSNH-PIVGGTGDFLFVQGY 160
+S + + I + S +S++G + P PIVGGTG F +GY
Sbjct: 104 YGSSCKEEVGLIMAMSFCFEDGPYKDSTISMIGKNSAMNPIREMPIVGGTGMFRMARGY 162
BLAST of Lag0017133 vs. ExPASy Swiss-Prot
Match:
Q9FIG7 (Dirigent protein 2 OS=Arabidopsis thaliana OX=3702 GN=DIR2 PE=2 SV=1)
HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 40/178 (22.47%), Postives = 77/178 (43.26%), Query Frame = 0
Query: 6 LILSSFLTIILSSLLAPTAAAETAYHHHHRHCHLRSLHFSLFQHETINKTGYIIVSGVAG 65
L+L TI+L S+ + A + + + H + H+ I+ V
Sbjct: 7 LLLPLLSTILLLSVSVTESEAYSTTKPCQGYKPDKFTHLHFYFHDVISGDKPTAVKVAEA 66
Query: 66 PGVSQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGTSITSGLDGLRSISIAKISLRLRH 125
+ + FG + + DPLT D +SK VG ++G + + + + ++
Sbjct: 67 RRTNSSNVNFGVIMIADDPLTEGPDPSSKEVGRAQGMYALTAMKNISFTMVFNLAFTAGE 126
Query: 126 HTGSLSIVGGTHNV--KPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVVYKLEFHLY 182
GS + G + + K PI+GGTG F F +GY + ++G+ V +E++++
Sbjct: 127 FNGSTVAMYGRNEIFSKVREMPIIGGTGAFRFARGYAQAKTYKVVGLDAV--VEYNVF 182
BLAST of Lag0017133 vs. ExPASy Swiss-Prot
Match:
Q67YM6 (Dirigent protein 11 OS=Arabidopsis thaliana OX=3702 GN=DIR11 PE=2 SV=1)
HSP 1 Score: 45.4 bits (106), Expect = 7.9e-04
Identity = 39/175 (22.29%), Postives = 79/175 (45.14%), Query Frame = 0
Query: 11 FLTIILSSLLAPTAA--AETAYHHHHRHCHLRSLHFSLFQHETINKTGYIIVSGVAGPGV 70
F T++L ++ + ++T ++ L LHF + H+ I+ + PG
Sbjct: 20 FSTVLLLTITVTQSKPYSKTTPFQGNKPDKLTHLHF--YFHDIISGDKPTTIRVAEAPGT 79
Query: 71 SQTTTPFGTMFVFQDPLTTTADRASKLVGTSEGTSITSGLDGLRSISIAKISLRLRHHTG 130
+ + T FG + + P+T + +SK VG ++G ++ + + G
Sbjct: 80 NSSATVFGAVLIVDAPVTEGPELSSKEVGRAQGLYASTDMKTFGFTMVFNFVFTEGEFNG 139
Query: 131 SLSIVGGTHNV--KPSNHPIVGGTGDFLFVQGYVTSSPVDLIGITVVYKLEFHLY 182
S + + G + + + PI+GGTGDF F +GY ++ I V +E++++
Sbjct: 140 STAALYGRNPILLEERELPIIGGTGDFRFARGYALPKTYKVVNIDAV--VEYNVF 190
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9C523 | 5.0e-06 | 28.13 | Dirigent protein 19 OS=Arabidopsis thaliana OX=3702 GN=DIR19 PE=2 SV=1 | [more] |
Q9FIG6 | 3.2e-05 | 24.59 | Dirigent protein 1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=2 SV=1 | [more] |
Q84TH6 | 7.2e-05 | 30.25 | Dirigent protein 23 OS=Arabidopsis thaliana OX=3702 GN=DIR23 PE=2 SV=1 | [more] |
Q9FIG7 | 1.2e-04 | 22.47 | Dirigent protein 2 OS=Arabidopsis thaliana OX=3702 GN=DIR2 PE=2 SV=1 | [more] |
Q67YM6 | 7.9e-04 | 22.29 | Dirigent protein 11 OS=Arabidopsis thaliana OX=3702 GN=DIR11 PE=2 SV=1 | [more] |