Lag0017131 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017131
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PIG-H domain-containing protein
Location	chr5: 402247 .. 403586 (-)
RNA-Seq Expression	Lag0017131
Synteny	Lag0017131

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTTTCCATTAAGGATTGGAGATACGAGTACTTTTCCGACAGTAAATGGCCATCTGAAGCAGTCGATATCCACCACGTTGTTGTTCTTAGGAATAGGAGTGGTGAAAAGGGATTCCTCTTGTTCATATTTGCTGCCCTTGCGTTCTGTTTTTTCCTACTCAAGGTAATTTGGCATTCTCATTTAATTTTTGATGTGTAATTTGGAATTGAATGTCAAATATTTTCTCGTTCTTAGTAAGTTGACTCTGATTTCTTGATTTCTATGTCTGCTTCTTTTGTCTCCTTGCTTAATTGCTTCTTGTTTCCGAAGTACGTTTGTAATTGTTCAGTACTGTTCAATTTTATGTCTTTTGAATATCAGTTCCGTTCCACGACCTAAATATACCAATTTCATTGCAGGTCTCTTCTTTCAACTATTGTTATTATTGCCTGTGTCCTTTCTTTCGATTTATTGCTAAGAAAACCTTCCACTAATGAATTCCATGGTTATTGATATGCATTGGGCCAAACTGCCAAACTATTTGCATAAACCGAATTAATGGTATTAAGTTTTTGATATTCGAACAGCACTCTTGGAAATCTGTTGAAGTTCTTGTTAGTGCATGATCATTGACTCAGGGTTGTACAGGGCCAATCAATTTTTGTCGTCTCATGGTGCTTGGTCTTGAATATGTTCTTTGCCAAGAAGTTGTTCAAGAGAACGGTTGAAAAAGGTGTGGAATTGGGGAATTTTTCTGTCTCACGTTATAATGCAATATTGTGTAGCATTTGTTGAAACTTAAATTCTTGCTGTTATCATGTCTTTTTAACGGATGGGGATGTCTAAATGTGCAGAGTCTGTTATGGTTATGCCAAATTTCGGAGTCCAACTTGAAACTCACTATAGAAGGTAAACTTTTTTTTTTTTGGACCTGTGTCTGATTGTTTAAGCACCCATTTTGGTGGATATTTCAGCATCCATCTTCTTTTCTTCACTGAAAGAAAGATTATGAATATTATAGCACCTATTTGGAAACAAACAGCTCATAGTAATTGAGAGATTCTCTCACGATGTCCCCTACCCCAAACCCCGGAAAACATCTCCCACTGCGACCATGACGATGAACTCGCCAAACCCAGACTACAGTGTTGACCTACATCACCATGTTGCCCTCACGTCGATGCTCTGTTAAGATAGAGAATAAGTACTTTTCTTGTAGCTTTGATAGAAACTATAAAGGTCGAGTAGTTAGGATTACTAAATCCCACCAAAGGAGAATATACGCCCTCTTTGTTGAGGAAGTTGTTCTAGTTTGGATCTACGACTCAATAGACGCCTACTCCTTACCCTAG

mRNA sequence

ATGGCCAAATTTTCCATTAAGGATTGGAGATACGAGTACTTTTCCGACAGTAAATGGCCATCTGAAGCAGTCGATATCCACCACGTTGTTGTTCTTAGGAATAGGAGTGGTGAAAAGGGATTCCTCTTGTTCATATTTGCTGCCCTTGCGTTCTGTTTTTTCCTACTCAAGGGCCAATCAATTTTTGTCGTCTCATGGTGCTTGGTCTTGAATATGTTCTTTGCCAAGAAGTTGTTCAAGAGAACGGTTGAAAAAGAGTCTGTTATGGTTATGCCAAATTTCGGAGTCCAACTTGAAACTCACTATAGAAGCTTTGATAGAAACTATAAAGGTCGAGTAGTTAGGATTACTAAATCCCACCAAAGGAGAATATACGCCCTCTTTGTTGAGGAAGTTGTTCTAGTTTGGATCTACGACTCAATAGACGCCTACTCCTTACCCTAG

Coding sequence (CDS)

ATGGCCAAATTTTCCATTAAGGATTGGAGATACGAGTACTTTTCCGACAGTAAATGGCCATCTGAAGCAGTCGATATCCACCACGTTGTTGTTCTTAGGAATAGGAGTGGTGAAAAGGGATTCCTCTTGTTCATATTTGCTGCCCTTGCGTTCTGTTTTTTCCTACTCAAGGGCCAATCAATTTTTGTCGTCTCATGGTGCTTGGTCTTGAATATGTTCTTTGCCAAGAAGTTGTTCAAGAGAACGGTTGAAAAAGAGTCTGTTATGGTTATGCCAAATTTCGGAGTCCAACTTGAAACTCACTATAGAAGCTTTGATAGAAACTATAAAGGTCGAGTAGTTAGGATTACTAAATCCCACCAAAGGAGAATATACGCCCTCTTTGTTGAGGAAGTTGTTCTAGTTTGGATCTACGACTCAATAGACGCCTACTCCTTACCCTAG

Protein sequence

MAKFSIKDWRYEYFSDSKWPSEAVDIHHVVVLRNRSGEKGFLLFIFAALAFCFFLLKGQSIFVVSWCLVLNMFFAKKLFKRTVEKESVMVMPNFGVQLETHYRSFDRNYKGRVVRITKSHQRRIYALFVEEVVLVWIYDSIDAYSLP

Homology

[Close]

BLAST of Lag0017131 vs. NCBI nr
Match: XP_038876673.1 (uncharacterized protein LOC120069067 [Benincasa hispida])

HSP 1 Score: 184.5 bits (467), Expect = 6.6e-43
Identity = 92/115 (80.00%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MAKFSIKDWRYEYFSDSKWPSEAVDIHHVVVLRNRSGEKGFLLFIFAALAFCFFLLKGQS 60
           M KFSI DWRY YFSD KWPSEAVDIHHVVVLRNRSGEKGFL   FAALAFCFFLLKGQS
Sbjct: 1   MDKFSITDWRYGYFSDRKWPSEAVDIHHVVVLRNRSGEKGFLFCFFAALAFCFFLLKGQS 60

Query: 61  IFVVSWCLVLNMFFAKKLFKRTVEKESVMVMPNFGVQLETHYRSFDRNYKGRVVR 116
           IFV  WCLVLN+FF KKLFK TVEKE+VMV+PNFGVQLETH+RS      G+V+R
Sbjct: 61  IFVALWCLVLNVFFGKKLFKGTVEKETVMVLPNFGVQLETHFRS------GKVIR 109

[Close]

BLAST of Lag0017131 vs. NCBI nr
Match: XP_022971392.1 (uncharacterized protein LOC111470129 [Cucurbita maxima])

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41
Identity = 89/104 (85.58%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MAKFSIKDWRYEYFSDSKWPSEAVDIHHVVVLRNRSGEKGFLLFIFAALAFCFFLLKGQS 60
           MAKFSI DWRY YFSDSKW SEAVDIHHVVVLRNRS  KGFL +I AALAFCFF+LKGQS
Sbjct: 1   MAKFSITDWRYGYFSDSKWQSEAVDIHHVVVLRNRSNGKGFLFYILAALAFCFFILKGQS 60

Query: 61  IFVVSWCLVLNMFFAKKLFKRTVEKESVMVMPNFGVQLETHYRS 105
           IFVV WC VLN+ FAKKLFK TVEKESVMVMPNFGVQLETHY S
Sbjct: 61  IFVVLWCWVLNVLFAKKLFKGTVEKESVMVMPNFGVQLETHYTS 104

[Close]

BLAST of Lag0017131 vs. NCBI nr
Match: XP_023539514.1 (uncharacterized protein LOC111800156 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-41
Identity = 88/104 (84.62%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MAKFSIKDWRYEYFSDSKWPSEAVDIHHVVVLRNRSGEKGFLLFIFAALAFCFFLLKGQS 60
           MAKFSI DWRY YFSDSKW SEAVDIHHVVVLRNRS  KGFL +I AALAFCFF+LKGQS
Sbjct: 1   MAKFSITDWRYGYFSDSKWQSEAVDIHHVVVLRNRSSGKGFLFYILAALAFCFFILKGQS 60

Query: 61  IFVVSWCLVLNMFFAKKLFKRTVEKESVMVMPNFGVQLETHYRS 105
           IFVV WC +LN+ FAKKLFK TVEKESVMVMPNFGVQLETHY S
Sbjct: 61  IFVVLWCWILNVLFAKKLFKGTVEKESVMVMPNFGVQLETHYTS 104

[Close]

BLAST of Lag0017131 vs. NCBI nr
Match: XP_022946831.1 (uncharacterized protein LOC111450501 [Cucurbita moschata])

HSP 1 Score: 178.7 bits (452), Expect = 3.6e-41
Identity = 87/104 (83.65%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MAKFSIKDWRYEYFSDSKWPSEAVDIHHVVVLRNRSGEKGFLLFIFAALAFCFFLLKGQS 60
           MAKFSI DWRY YFSDSKW SEAVDIHHVVVLRNRS  KGFL +I AALAFCFF+LKGQS
Sbjct: 1   MAKFSITDWRYGYFSDSKWQSEAVDIHHVVVLRNRSNGKGFLFYILAALAFCFFILKGQS 60

Query: 61  IFVVSWCLVLNMFFAKKLFKRTVEKESVMVMPNFGVQLETHYRS 105
           IFVV WC +LN+ FAKKLFK TV+KESVMVMPNFGVQLETHY S
Sbjct: 61  IFVVLWCWILNVLFAKKLFKGTVQKESVMVMPNFGVQLETHYTS 104

[Close]

BLAST of Lag0017131 vs. NCBI nr
Match: KAG7027831.1 (hypothetical protein SDJN02_09008, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.7 bits (452), Expect = 3.6e-41
Identity = 88/104 (84.62%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MAKFSIKDWRYEYFSDSKWPSEAVDIHHVVVLRNRSGEKGFLLFIFAALAFCFFLLKGQS 60
           MAKFSI DWRY YFSDSKW SEAVDIHHVVVLRNRS  KGFL +I AALAFCFF+LKGQS
Sbjct: 1   MAKFSITDWRYGYFSDSKWQSEAVDIHHVVVLRNRSNGKGFLFYILAALAFCFFILKGQS 60

Query: 61  IFVVSWCLVLNMFFAKKLFKRTVEKESVMVMPNFGVQLETHYRS 105
           IF V WC VLN+ FAKKLFK TVEKESVMVMPNFGVQLETHY S
Sbjct: 61  IFAVLWCWVLNVLFAKKLFKGTVEKESVMVMPNFGVQLETHYTS 104

The following BLAST results are available for this feature:

BLAST of Lag0017131 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876673.1	6.6e-43	80.00	uncharacterized protein LOC120069067 [Benincasa hispida]	[more]
XP_022971392.1	1.2e-41	85.58	uncharacterized protein LOC111470129 [Cucurbita maxima]	[more]
XP_023539514.1	1.6e-41	84.62	uncharacterized protein LOC111800156 [Cucurbita pepo subsp. pepo]	[more]
XP_022946831.1	3.6e-41	83.65	uncharacterized protein LOC111450501 [Cucurbita moschata]	[more]
KAG7027831.1	3.6e-41	84.62	hypothetical protein SDJN02_09008, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0017131 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15231:SF1	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H	coord: 3..105
IPR044215	Phosphatidylinositol N-acetylglucosaminyltransferase subunit H	PANTHER	PTHR15231	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H	coord: 3..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017131.1	Lag0017131.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006506	GPI anchor biosynthetic process
cellular_component	GO:0000506	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0017176	phosphatidylinositol N-acetylglucosaminyltransferase activity