Lag0017127 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017127
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 371647 .. 372218 (-)
RNA-Seq ExpressionLag0017127
SyntenyLag0017127
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACTCGTCCCTCAGCAAACCCTAGTTCTAATAAATCCATTCGGCAATTTCAGAGGTTCTAATATTCGATTTACTTCACTCCTTTTCATATATTATAAACAGTTTAAGGTCACTTCCCTTTCAACAGGTTTTCAGAAACAGAGCACACGCGAAAGCGACAATTGCCAAAGAACTGGGCATTTCCGCAAAATTGAAAGTTAACAAAAATGCCAATGAAGACTATACTCGCTTGGCCCTCTTGCGTGTGGGGTTTAGGAAGATTCATGAAAAGCATCGAATTCTTAACGAAACTATCCTAAAAAAACCCTACATTGAAGTCTCTTGTAACTACAATTTTACTCTATTTATGTCAAAATCCCAAAAGCTATTCTCACATGTTAGTGCAGTATCCACTGCCGGACTCTTCTTTCCGATGCGGCGGTGCCGGCGAATATACCGACGGTTCCGATGCCCGAACCGCACTCAGTTAAAAGGCAACTTCTCTTCGAGACGACTGTGCTCCGTCGCAGTGGATGAAAAAACGGCCGTGCCGAGTGCCGAGTGCCGGATTCAGAGCATACCTTCGTAA

mRNA sequence

ATGGATACTCGTCCCTCAGCAAACCCTAGTTCTAATAAATCCATTCGGCAATTTCAGAGAAACAGAGCACACGCGAAAGCGACAATTGCCAAAGAACTGGGCATTTCCGCAAAATTGAAAGTTAACAAAAATGCCAATGAAGACTATACTCGCTTGGCCCTCTTGCGTGTGGGGTTTAGGAAGATTCATGAAAAGCATCGAATTCTTAACGAAACTATCCTAAAAAAACCCTACATTGAAGTCTCTTGTAACTACAATTTTACTCTATTTATGTCAAAATCCCAAAAGCTATTCTCACATGTTAGTGCAGTATCCACTGCCGGACTCTTCTTTCCGATGCGGCGGTGCCGGCGAATATACCGACGGTTCCGATGCCCGAACCGCACTCAGTTAAAAGGCAACTTCTCTTCGAGACGACTGTGCTCCGTCGCAGTGGATGAAAAAACGGCCGTGCCGAGTGCCGAGTGCCGGATTCAGAGCATACCTTCGTAA

Coding sequence (CDS)

ATGGATACTCGTCCCTCAGCAAACCCTAGTTCTAATAAATCCATTCGGCAATTTCAGAGAAACAGAGCACACGCGAAAGCGACAATTGCCAAAGAACTGGGCATTTCCGCAAAATTGAAAGTTAACAAAAATGCCAATGAAGACTATACTCGCTTGGCCCTCTTGCGTGTGGGGTTTAGGAAGATTCATGAAAAGCATCGAATTCTTAACGAAACTATCCTAAAAAAACCCTACATTGAAGTCTCTTGTAACTACAATTTTACTCTATTTATGTCAAAATCCCAAAAGCTATTCTCACATGTTAGTGCAGTATCCACTGCCGGACTCTTCTTTCCGATGCGGCGGTGCCGGCGAATATACCGACGGTTCCGATGCCCGAACCGCACTCAGTTAAAAGGCAACTTCTCTTCGAGACGACTGTGCTCCGTCGCAGTGGATGAAAAAACGGCCGTGCCGAGTGCCGAGTGCCGGATTCAGAGCATACCTTCGTAA

Protein sequence

MDTRPSANPSSNKSIRQFQRNRAHAKATIAKELGISAKLKVNKNANEDYTRLALLRVGFRKIHEKHRILNETILKKPYIEVSCNYNFTLFMSKSQKLFSHVSAVSTAGLFFPMRRCRRIYRRFRCPNRTQLKGNFSSRRLCSVAVDEKTAVPSAECRIQSIPS
Homology
[Close]
BLAST of Lag0017127 vs. NCBI nr
Match: KAG6596282.1 (hypothetical protein SDJN03_09462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 8.4e-15
Identity = 56/105 (53.33%), Postives = 67/105 (63.81%), Query Frame = 0 

Query: 14  SIRQFQRNRAHAKATIAKELGISAKLKVNKNANEDYTRLALL-RVGFRKIHEKHRILNET 73
           S +Q  RNRA+AKAT+AKEL  SA LKVNKNANE+ TRLAL       +  +    L + 
Sbjct: 2   SDKQDFRNRAYAKATMAKELRFSATLKVNKNANENSTRLALFGGWSLGRFIKSDEFLTKL 61

Query: 74  ILKKPYIEVSCNYNFTLFMSKSQKLFSHVSAVSTAGLFFPMRRCR 118
            L+KPYIE+ C YN TLF+ KSQKLFS VS V        M RC+
Sbjct: 62  ALRKPYIEIFCVYNLTLFLLKSQKLFSQVSPVIHRRTLVLMWRCQ 106

The following BLAST results are available for this feature:
BLAST of Lag0017127 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596282.18.4e-1553.33hypothetical protein SDJN03_09462, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lag0017127 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017127.1Lag0017127.1mRNA