Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCGCTATTTTACGGCTCTCGCGGCTAATACTTCGTCGGCGTCGGCGCCTCCCCCAGAGGCGGTGGCGCTGGAGTCCGACTTCGTCGTGATTCTCGCGGCGCTGCTCTGTGCCCTAATTTGTATGGTAGGGCTCATAGCGGTGGCTCGGTGCGCCTGGCTCCGGCGGGCCGGTGCCGGTGCCGGTGCTGCTGCAGCTAATCAGGCGTCTGCGAATAGGGGATTGAAGAAGAAGATCCTGCAGTCGCTCCCGAAATTCACGTACAAAACGTCAGGGTCGGGCGGAGAGGGGAAATTTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCGTGGAGGGGGAGGAGATTCGGCAGCTGCCGCAGTGCGGGCATTGCTTCCACGTAAGCTGCGTAGACACGTGGCTGGGGACCCACTCGTCGTGCCCCTCTTGCCGACAGATTCTGGTGGTGGCGAGATGCCAGAAGTGCGGGCAGTTCCCGGCGGTGGTCCACGGCGGCGGTCACAGCGAGGAGGAGCACAAGAGGAGGGAAGATAACGATGCTAACAACACGGGTTTGGGGTTTTTGCCTTGA
mRNA sequence
ATGACTCGCTATTTTACGGCTCTCGCGGCTAATACTTCGTCGGCGTCGGCGCCTCCCCCAGAGGCGGTGGCGCTGGAGTCCGACTTCGTCGTGATTCTCGCGGCGCTGCTCTGTGCCCTAATTTGTATGGTAGGGCTCATAGCGGTGGCTCGGTGCGCCTGGCTCCGGCGGGCCGGTGCCGGTGCCGGTGCTGCTGCAGCTAATCAGGCGTCTGCGAATAGGGGATTGAAGAAGAAGATCCTGCAGTCGCTCCCGAAATTCACGTACAAAACGTCAGGGTCGGGCGGAGAGGGGAAATTTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCGTGGAGGGGGAGGAGATTCGGCAGCTGCCGCAGTGCGGGCATTGCTTCCACGTAAGCTGCGTAGACACGTGGCTGGGGACCCACTCGTCGTGCCCCTCTTGCCGACAGATTCTGGTGGTGGCGAGATGCCAGAAGTGCGGGCAGTTCCCGGCGGTGGTCCACGGCGGCGGTCACAGCGAGGAGGAGCACAAGAGGAGGGAAGATAACGATGCTAACAACACGGGTTTGGGGTTTTTGCCTTGA
Coding sequence (CDS)
ATGACTCGCTATTTTACGGCTCTCGCGGCTAATACTTCGTCGGCGTCGGCGCCTCCCCCAGAGGCGGTGGCGCTGGAGTCCGACTTCGTCGTGATTCTCGCGGCGCTGCTCTGTGCCCTAATTTGTATGGTAGGGCTCATAGCGGTGGCTCGGTGCGCCTGGCTCCGGCGGGCCGGTGCCGGTGCCGGTGCTGCTGCAGCTAATCAGGCGTCTGCGAATAGGGGATTGAAGAAGAAGATCCTGCAGTCGCTCCCGAAATTCACGTACAAAACGTCAGGGTCGGGCGGAGAGGGGAAATTTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCGTGGAGGGGGAGGAGATTCGGCAGCTGCCGCAGTGCGGGCATTGCTTCCACGTAAGCTGCGTAGACACGTGGCTGGGGACCCACTCGTCGTGCCCCTCTTGCCGACAGATTCTGGTGGTGGCGAGATGCCAGAAGTGCGGGCAGTTCCCGGCGGTGGTCCACGGCGGCGGTCACAGCGAGGAGGAGCACAAGAGGAGGGAAGATAACGATGCTAACAACACGGGTTTGGGGTTTTTGCCTTGA
Protein sequence
MTRYFTALAANTSSASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAGAGAGAAAANQASANRGLKKKILQSLPKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVHGGGHSEEEHKRREDNDANNTGLGFLP
Homology
BLAST of Lag0017120 vs. NCBI nr
Match:
XP_023539225.1 (RING-H2 finger protein ATL8 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 323.9 bits (829), Expect = 9.1e-85
Identity = 166/196 (84.69%), Postives = 175/196 (89.29%), Query Frame = 0
Query: 1 MTRYFTALAANTSS----ASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60
MTRYF ALA NTSS A+APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 41 MTRYFQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 100
Query: 61 RAGAGAGAAAANQASANRGLKKKILQSLPKFTYKTSGSGGEGKFAAECAICLAEFVEGEE 120
R G A NQASANRGLKKKILQSLPKFTY+ SGSGGEGKFAAECAICLAEF++GEE
Sbjct: 101 RGSNSGG--AGNQASANRGLKKKILQSLPKFTYRASGSGGEGKFAAECAICLAEFLDGEE 160
Query: 121 IRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVHGGGH-SEEEHK 180
IRQLPQCGHCFHVSCVDTWL +HSSCPSCRQILVVARCQKCG+FPAVVHGG H +EEE K
Sbjct: 161 IRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNNEEEQK 220
Query: 181 RREDNDANNTGLGFLP 192
RREDN+ NN GLGFLP
Sbjct: 221 RREDNNGNNRGLGFLP 234
BLAST of Lag0017120 vs. NCBI nr
Match:
KAG6596287.1 (RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 321.2 bits (822), Expect = 5.9e-84
Identity = 165/196 (84.18%), Postives = 174/196 (88.78%), Query Frame = 0
Query: 1 MTRYFTALAANTSS----ASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60
MTRYF ALA NTSS A+APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 1 MTRYFQALAGNTSSATATATAPPPEAVAMESDFVVILAALLCALICMVGLIAVARCAWLR 60
Query: 61 RAGAGAGAAAANQASANRGLKKKILQSLPKFTYKTSGSGGEGKFAAECAICLAEFVEGEE 120
R G G A NQASANRGLKKKILQSLPKF Y+ SGSGGE KFAAECAICLAEF++GEE
Sbjct: 61 RGSNGGG--AGNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFLDGEE 120
Query: 121 IRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVHGGGH-SEEEHK 180
IRQLPQCGHCFHVSCVDTWL +HSSCPSCRQILVVARCQKCG+FPAVVHGG H +EEE K
Sbjct: 121 IRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNTEEEQK 180
Query: 181 RREDNDANNTGLGFLP 192
RREDN+ NN GLGFLP
Sbjct: 181 RREDNNGNNRGLGFLP 194
BLAST of Lag0017120 vs. NCBI nr
Match:
XP_022933605.1 (RING-H2 finger protein ATL8 [Cucurbita moschata])
HSP 1 Score: 321.2 bits (822), Expect = 5.9e-84
Identity = 165/196 (84.18%), Postives = 174/196 (88.78%), Query Frame = 0
Query: 1 MTRYFTALAANTSS----ASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60
MTRYF ALA NTSS A+APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 1 MTRYFQALAGNTSSATATATAPPPEAVAMESDFVVILAALLCALICMVGLIAVARCAWLR 60
Query: 61 RAGAGAGAAAANQASANRGLKKKILQSLPKFTYKTSGSGGEGKFAAECAICLAEFVEGEE 120
R G G A NQASANRGLKKKILQSLPKF Y+ SGSGGE KFAAECAICLAEF++GEE
Sbjct: 61 RGSNGGG--AGNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFLDGEE 120
Query: 121 IRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVHGGGHS-EEEHK 180
IRQLPQCGHCFHVSCVDTWL +HSSCPSCRQILVVARCQKCG+FPAVVHGG H+ EEE K
Sbjct: 121 IRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNDEEEQK 180
Query: 181 RREDNDANNTGLGFLP 192
RREDN+ NN GLGFLP
Sbjct: 181 RREDNNGNNRGLGFLP 194
BLAST of Lag0017120 vs. NCBI nr
Match:
XP_022971423.1 (RING-H2 finger protein ATL8 [Cucurbita maxima])
HSP 1 Score: 318.5 bits (815), Expect = 3.8e-83
Identity = 164/196 (83.67%), Postives = 172/196 (87.76%), Query Frame = 0
Query: 1 MTRYFTALAANTSS----ASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60
MTRY ALA NTSS A+APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 41 MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 100
Query: 61 RAGAGAGAAAANQASANRGLKKKILQSLPKFTYKTSGSGGEGKFAAECAICLAEFVEGEE 120
R G G A NQASANRGLKKKILQSLPKF Y+ SGSGGEGKFAAECAICLAEF++GEE
Sbjct: 101 RGSNGGG--AGNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEE 160
Query: 121 IRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVHGGGH-SEEEHK 180
IRQLPQCGHCFHVSCVDTWL +HSSCPSCRQILVVARCQKCG FPAVVHG H +EEE K
Sbjct: 161 IRQLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNEEEQK 220
Query: 181 RREDNDANNTGLGFLP 192
RREDN+ NN GLGFLP
Sbjct: 221 RREDNNGNNRGLGFLP 234
BLAST of Lag0017120 vs. NCBI nr
Match:
KAG7027836.1 (RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 288.9 bits (738), Expect = 3.2e-74
Identity = 144/168 (85.71%), Postives = 152/168 (90.48%), Query Frame = 0
Query: 25 LESDFVVILAALLCALICMVGLIAVARCAWLRRAGAGAGAAAANQASANRGLKKKILQSL 84
+ESDFVVILAALLCALICMVGLIAVARCAWLRR G G A NQASANRGLKKKILQSL
Sbjct: 1 MESDFVVILAALLCALICMVGLIAVARCAWLRRGNNGGG--AGNQASANRGLKKKILQSL 60
Query: 85 PKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFHVSCVDTWLGTHSSCPS 144
PKF Y+ SGSGGE KFAAECAICLAEF++GEEIRQLPQCGHCFHVSCVDTWL +HSSCPS
Sbjct: 61 PKFAYRASGSGGEEKFAAECAICLAEFLDGEEIRQLPQCGHCFHVSCVDTWLSSHSSCPS 120
Query: 145 CRQILVVARCQKCGQFPAVVHGGGH-SEEEHKRREDNDANNTGLGFLP 192
CRQILVVARCQKCG+FPAVVHGG H +EEE KRREDN+ NN GLGFLP
Sbjct: 121 CRQILVVARCQKCGEFPAVVHGGDHNTEEEQKRREDNNGNNRGLGFLP 166
BLAST of Lag0017120 vs. ExPASy Swiss-Prot
Match:
Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 1.0e-46
Identity = 108/198 (54.55%), Postives = 132/198 (66.67%), Query Frame = 0
Query: 5 FTALAANTSSASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAGAGAGA 64
F L + + + A AL SD VVILAALLCALIC++GLIAV+RC WLRR AG
Sbjct: 6 FRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRT 65
Query: 65 AAANQ--------ASANRGLKKKILQSLPKFTYKTSGSGGEGKFAAECAICLAEFVEGEE 124
+ +Q A+AN+GLKKK+LQSLPK T+ S E + AECAICLAEF G+E
Sbjct: 66 VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTF--SPESPESEKFAECAICLAEFSAGDE 125
Query: 125 IRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVHGGGHSEEEHK- 184
+R LPQCGH FHV+C+DTWLG+HSSCPSCRQILVVARC KCG P G SE E +
Sbjct: 126 LRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEI 185
Query: 185 --RREDNDANNTGLGFLP 192
++ ++D N+ FLP
Sbjct: 186 RIKQGEDDPNS----FLP 197
BLAST of Lag0017120 vs. ExPASy Swiss-Prot
Match:
Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)
HSP 1 Score: 181.0 bits (458), Expect = 1.2e-44
Identity = 99/178 (55.62%), Postives = 117/178 (65.73%), Query Frame = 0
Query: 9 AANTSSASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAGAGAGAAAAN 68
A +TS A A PP SD V+ILA LLCAL C++GLIAV+RCAWLRR + + +
Sbjct: 12 ANSTSPAEASPP----FNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTH 71
Query: 69 Q---ASANRGLKKKILQSLPKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGH 128
A+AN+GLKKK+L+SLPK TY E ECAICL EF G+E+R LPQCGH
Sbjct: 72 PPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEK--LVECAICLTEFAAGDELRVLPQCGH 131
Query: 129 CFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVHGGGHSEEEHKRREDNDAN 184
FHVSC+DTWLG+HSSCPSCRQILVV RC KCG P G + K+RED N
Sbjct: 132 GFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183
BLAST of Lag0017120 vs. ExPASy Swiss-Prot
Match:
O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 3.2e-40
Identity = 93/184 (50.54%), Postives = 115/184 (62.50%), Query Frame = 0
Query: 16 SAPPP----EAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAGAGAGAAAANQAS 75
+APPP E +A ESD VVIL+ALLCALIC+ GL AV RCAWLRR AG + S
Sbjct: 11 AAPPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAG-----GDSPS 70
Query: 76 ANRGLKKKILQSLPKFTY----KTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCF 135
N+GLKKK LQSLP+ T+ TSG+ E + ECAICL +F +GEEIR LP CGH F
Sbjct: 71 PNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSF 130
Query: 136 HVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVHGGGHSEEEHKRREDNDANNTGL 192
HV C+D WL + SSCPSCR+IL RC +CG ++ H+ + ++ T
Sbjct: 131 HVECIDKWLVSRSSCPSCRRILTPVRCDRCGH----ASTAEMKDQAHRHQHHQHSSTTIP 185
BLAST of Lag0017120 vs. ExPASy Swiss-Prot
Match:
Q9ZT49 (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 5.4e-40
Identity = 92/191 (48.17%), Postives = 113/191 (59.16%), Query Frame = 0
Query: 14 SASAPPPEAV-ALESDFVVILAALLCALICMVGLIAVARCAWLRRAGAGAGAAAANQASA 73
+AS PPPE + A E+D VVIL+ALLCAL+C+ GL AVARCAWLRR AA
Sbjct: 10 TASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP 69
Query: 74 NRGLKKKILQSLPKFTYKTSGSG------------GEGKFAAECAICLAEFVEGEEIRQL 133
N+GLKKK LQ+LPK TY S S G+G + ECAIC+ EF EGEEIR L
Sbjct: 70 NKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRIL 129
Query: 134 PQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVHGGGHSEEEHKRREDN 192
P C H FHV+C+D WL + SSCPSCR+ILV +C +CG + + H +
Sbjct: 130 PLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCGHHASTAETQVKDQPPHHQHPSQ 189
BLAST of Lag0017120 vs. ExPASy Swiss-Prot
Match:
Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 6.4e-25
Identity = 65/126 (51.59%), Postives = 84/126 (66.67%), Query Frame = 0
Query: 26 ESDFVVILAALLCALICMVGLIAVARCAWLRRAGAGAGAAAANQASANR-GLKKKILQSL 85
+++ V+ILAALLCALI +GL ++ RCA R G G ++AA A+R GLKK+ L+
Sbjct: 31 DANMVIILAALLCALILALGLNSILRCA--MRCGFGLSSSAAAGTVADRAGLKKRELKKF 90
Query: 86 PKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFHVSCVDTWLGTHSSCPS 145
P Y GSG A ECAICL EF +GE +R LP C H FH+SC+DTWL +HSSCP+
Sbjct: 91 PVAEY---GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPN 150
Query: 146 CRQILV 151
CR L+
Sbjct: 151 CRHSLI 151
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_023539225.1 | 9.1e-85 | 84.69 | RING-H2 finger protein ATL8 [Cucurbita pepo subsp. pepo] | [more] |
KAG6596287.1 | 5.9e-84 | 84.18 | RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022933605.1 | 5.9e-84 | 84.18 | RING-H2 finger protein ATL8 [Cucurbita moschata] | [more] |
XP_022971423.1 | 3.8e-83 | 83.67 | RING-H2 finger protein ATL8 [Cucurbita maxima] | [more] |
KAG7027836.1 | 3.2e-74 | 85.71 | RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. argyrosperm... | [more] |
Match Name | E-value | Identity | Description | |
Q9LM69 | 1.0e-46 | 54.55 | RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1 | [more] |
Q8LC69 | 1.2e-44 | 55.62 | RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2 | [more] |
O22755 | 3.2e-40 | 50.54 | Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT... | [more] |
Q9ZT49 | 5.4e-40 | 48.17 | Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT... | [more] |
Q9LZV8 | 6.4e-25 | 51.59 | RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1 | [more] |