Lag0017118 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017118
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr5: 321790 .. 322977 (-)
RNA-Seq ExpressionLag0017118
SyntenyLag0017118
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAACTCCTTTCTCTTCAGGGAATCCAATCTATTTCTCACAGGCTCACAGCTACCTTGTTCAAAAACCCATTCTAGGTAATGGTTGGAAATAACCCAAAAGGTTTTAGGTTATTTGTGCAGGAACAAAATCGAGACCTCAAGCCATTTGTTTTGGGAATGCAAAGTGACTAAGGTAGGGTGGGATAAATATTGCCCGTTTTCTGATATTGGGTCTGTTAATGACAGGGCAGGGTGGACCTCGGCTGACTACCTGGAATTAATCTGGAACGAAAGCAGCAGCGATGCAAGCGGAGAAGATAGGATGAAGAGGAGCTTAATCATATGCTGGCAAATATGGTGTTTTCGAAATGAAGAGAGAAACAATAAGCAGATCTACAATCCGGAGCAGTTGGACAACAAAATCCAGAGATATTGCGATGAATTGTTAACAAACCACAATACGCACCTTCCTTTGGCAAGGAGAGTATCTGCCGTCGACGATGATCCTCAGATGTTGCTTTGGATACCAGCGCCGAAAGGAGTCTGGAAACTCAATAGTGATGCGTGTTGGAGGGAGGATTTAAATTGTGGGGGAATAGGCTGGATCATTCGGGATGACAAGGGTCAACCGGTGAGAGCAGGCTGCAAAAAGGTGGATAAAAAATGGAAAATCTCGTGGCTTGAGGCGTGGGCAATTTGCGAGGGGCTGAAATCGATTCCGGTGGAGGCTCCTGCTCTGCGAATAGAGTCAGATGCTCGAGAAGTGGTGAAATTATTGAGGGATGAGGATGAAGATTGGTCTGAGATATCCAACTTTATTAAGGAAGCAAAAGCCCTAATCTTGTCTAAGAAGATTGAGAAGATAGTTCAGGTGTCTAGAGGTCATAATAGGATGGCTCATCAATTGCCCAAGAAATCATCTGTGTTTAATTTATCTAAGAGTTAGGGTTAACTTTTTTCCTGATTGGCTGGTGGCTTTTAATGTTGCAGACATTTGTTGGTCACTGTACTAATGGGGGCTCCTGTACCATAAGGGGGTGTTTGGGGGAATGGAATGTAATCTGGATTACATGGAATCTGGATTACTAGGAATCTTGAATTGTAATCTGGATTACTGGAAATGTAGATGCCTGTGTTTGGAGTGCTGTATTTGGGCTGTAATCTGACCGATGCCTGTGTTTGGAGTGCTGTATTTGGGTTGTAA

mRNA sequence

ATGTACAACTCCTTTCTCTTCAGGGAATCCAATCTATTTCTCACAGGCTCACAGCTACCTTGTTCAAAAACCCATTCTAGGGCAGGGTGGACCTCGGCTGACTACCTGGAATTAATCTGGAACGAAAGCAGCAGCGATGCAAGCGGAGAAGATAGGATGAAGAGGAGCTTAATCATATGCTGGCAAATATGGTGTTTTCGAAATGAAGAGAGAAACAATAAGCAGATCTACAATCCGGAGCAGTTGGACAACAAAATCCAGAGATATTGCGATGAATTGTTAACAAACCACAATACGCACCTTCCTTTGGCAAGGAGAGTATCTGCCGTCGACGATGATCCTCAGATGTTGCTTTGGATACCAGCGCCGAAAGGAGTCTGGAAACTCAATAGTGATGCGTGTTGGAGGGAGGATTTAAATTGTGGGGGAATAGGCTGGATCATTCGGGATGACAAGGGTCAACCGGTGAGAGCAGGCTGCAAAAAGGTGGATAAAAAATGGAAAATCTCGTGGCTTGAGGCGTGGGCAATTTGCGAGGGGCTGAAATCGATTCCGGTGGAGGCTCCTGCTCTGCGAATAGAGTCAGATGCTCGAGAAGTGGTGAAATTATTGAGGGATGAGGATGAAGATTGGTCTGAGATATCCAACTTTATTAAGGAAGCAAAAGCCCTAATCTTGTCTAAGAAGATTGAGAAGATAGTTCAGATGCCTGTGTTTGGAGTGCTGTATTTGGGCTGTAATCTGACCGATGCCTGTGTTTGGAGTGCTGTATTTGGGTTGTAA

Coding sequence (CDS)

ATGTACAACTCCTTTCTCTTCAGGGAATCCAATCTATTTCTCACAGGCTCACAGCTACCTTGTTCAAAAACCCATTCTAGGGCAGGGTGGACCTCGGCTGACTACCTGGAATTAATCTGGAACGAAAGCAGCAGCGATGCAAGCGGAGAAGATAGGATGAAGAGGAGCTTAATCATATGCTGGCAAATATGGTGTTTTCGAAATGAAGAGAGAAACAATAAGCAGATCTACAATCCGGAGCAGTTGGACAACAAAATCCAGAGATATTGCGATGAATTGTTAACAAACCACAATACGCACCTTCCTTTGGCAAGGAGAGTATCTGCCGTCGACGATGATCCTCAGATGTTGCTTTGGATACCAGCGCCGAAAGGAGTCTGGAAACTCAATAGTGATGCGTGTTGGAGGGAGGATTTAAATTGTGGGGGAATAGGCTGGATCATTCGGGATGACAAGGGTCAACCGGTGAGAGCAGGCTGCAAAAAGGTGGATAAAAAATGGAAAATCTCGTGGCTTGAGGCGTGGGCAATTTGCGAGGGGCTGAAATCGATTCCGGTGGAGGCTCCTGCTCTGCGAATAGAGTCAGATGCTCGAGAAGTGGTGAAATTATTGAGGGATGAGGATGAAGATTGGTCTGAGATATCCAACTTTATTAAGGAAGCAAAAGCCCTAATCTTGTCTAAGAAGATTGAGAAGATAGTTCAGATGCCTGTGTTTGGAGTGCTGTATTTGGGCTGTAATCTGACCGATGCCTGTGTTTGGAGTGCTGTATTTGGGTTGTAA

Protein sequence

MYNSFLFRESNLFLTGSQLPCSKTHSRAGWTSADYLELIWNESSSDASGEDRMKRSLIICWQIWCFRNEERNNKQIYNPEQLDNKIQRYCDELLTNHNTHLPLARRVSAVDDDPQMLLWIPAPKGVWKLNSDACWREDLNCGGIGWIIRDDKGQPVRAGCKKVDKKWKISWLEAWAICEGLKSIPVEAPALRIESDAREVVKLLRDEDEDWSEISNFIKEAKALILSKKIEKIVQMPVFGVLYLGCNLTDACVWSAVFGL
Homology
BLAST of Lag0017118 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 7.1e-24
Identity = 72/191 (37.70%), Postives = 104/191 (54.45%), Query Frame = 0

Query: 46  DASGEDRMKRSLIICWQIWCFRNEERNNKQIY---NPEQLDNKIQRYCDELLTNH----- 105
           D +GE+  +RS+II WQIW     E  NK I+   +PE  D  IQ   D  + N      
Sbjct: 2   DKAGEEERRRSMIIAWQIW-----EMRNKSIFKGVHPETRD--IQLAIDRYIINSAGRNT 61

Query: 106 -------NTHLPLARRVSAVDDDPQMLLWIPAPKGVWKLNSDACWREDLNCGGIGWIIRD 165
                  N  L L RR+    +D     W P     WKLN++A WR D N GGIGWI+RD
Sbjct: 62  NLKGKSTNKDLHLIRRI----EDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRD 121

Query: 166 DKGQPVRAGCKKVDKKWKISWLEAWAICEGLKSIPVE-APALRIESDAREVVKLLRDEDE 221
           +KG+ ++A C+ +  +  I++LE  AICEGL++I  E    + +ESD+ E + LL  + +
Sbjct: 122 EKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQ 181

BLAST of Lag0017118 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-23
Identity = 71/202 (35.15%), Postives = 107/202 (52.97%), Query Frame = 0

Query: 46  DASGEDRMKRSLIICWQIWCFRNE--------ERNNKQIYNPEQLDNKIQRYCDELLTNH 105
           D +GE+  +RS+II WQIW  RN+        E  + Q+     + N   R  +    + 
Sbjct: 2   DKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSA 61

Query: 106 NTHLPLARRVSAVDDDPQMLLWIPAPKGVWKLNSDACWREDLNCGGIGWIIRDDKGQPVR 165
           N  L L RR+     D     W P     WKLN+DA WR D N GGIGWI+RD+KG+ ++
Sbjct: 62  NKDLHLIRRIG----DNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIK 121

Query: 166 AGCKKVDKKWKISWLEAWAICEGLKSI------PVEAPALR---IESDAREVVKLLRDED 225
           A C+ +  +  I++LE  AICEGL++I      P++    R   +ESD+ E + LL  + 
Sbjct: 122 ADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQC 181

Query: 226 EDWSEISNFIKEAKALILSKKI 231
           +D +EI   ++E   ++   KI
Sbjct: 182 QDQTEIIWLLEEIWQMMEDMKI 199

BLAST of Lag0017118 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-21
Identity = 69/209 (33.01%), Postives = 103/209 (49.28%), Query Frame = 0

Query: 5   FLFRESNLFLTGSQLPC--SKTHSRAGWTSADYLELIWNESSSDASGEDRMKRSLIICWQ 64
           + F +S + L   +  C  ++   R  WT+ +Y E +      D +GE+  +RS+II  Q
Sbjct: 107 WFFDKSMVMLEEPRANCNFNELEFRTNWTTKEYWEWL-----MDKAGEEERRRSMIIACQ 166

Query: 65  IWCFRNEERNNKQIYNPEQLDNKIQRYC------DELLTNHNTHLPLARRVSAVDDDPQM 124
           IW  RN+            +   I RY       D  L   +      RR+     D   
Sbjct: 167 IWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRKSKDFHPIRRIG----DNTR 226

Query: 125 LLWIPAPKGVWKLNSDACWREDLNCGGIGWIIRDDKGQPVRAGCKKVDKKWKISWLEAWA 184
             W P     WKLN+DA WR D N  GIGWI+RD+KG+ ++ GC+ +  +  I++LE  A
Sbjct: 227 ARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMA 286

Query: 185 ICEGLKSIPVE-APALRIESDAREVVKLL 205
           ICEGL++I  E    + +ESD+ E + LL
Sbjct: 287 ICEGLRAIRQEHCRPIHLESDSLEAIHLL 306

BLAST of Lag0017118 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-21
Identity = 65/185 (35.14%), Postives = 93/185 (50.27%), Query Frame = 0

Query: 27  RAGWTSADYLELIWNESSSDASGEDRMKRSLIICWQIWCFRNEERNNKQIYNPEQLDNKI 86
           R  WT+ +Y E +      D +GE+  +RS+II  QIW  RN+            +   I
Sbjct: 166 RTNWTTKEYWEWL-----MDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAI 225

Query: 87  QRYC------DELLTNHNTHLPLARRVSAVDDDPQMLLWIPAPKGVWKLNSDACWREDLN 146
            RY       D  L   +      RR+     D     W P     WKLN+DA WR D N
Sbjct: 226 DRYIINSAGQDTNLKRKSKDFHPIRRIG----DNTRARWKPPTSNSWKLNTDAAWRADTN 285

Query: 147 CGGIGWIIRDDKGQPVRAGCKKVDKKWKISWLEAWAICEGLKSIPVE-APALRIESDARE 205
             GIGWI+RD+KG+ ++ GC+ +  +  I++LE  AICEGL++I  E    + +ESD+ E
Sbjct: 286 TDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLE 341

BLAST of Lag0017118 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-16
Identity = 65/194 (33.51%), Postives = 102/194 (52.58%), Query Frame = 0

Query: 27  RAGWTSADYLELIWNESSSDASGEDRMKRSLIICWQIWCFRNEERNNKQIYNPEQLDNKI 86
           R  WT+ D     WN   +  S E+ +  S++I WQIW  RN      +  + +QLD  I
Sbjct: 10  RVHWTNKD----SWNWLVNMLSDEE-VATSMVIAWQIWESRNRSIFRGETIDEQQLDRSI 69

Query: 87  QRYCDELLTNHNTHLPLARRVSAVD-------DDPQML--LWIPAPKGVWKLNSDACWRE 146
             + +  + +  T +   RR    D       ++  ML   W   P   WKLN+DA W E
Sbjct: 70  VLFINSNI-DKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSE 129

Query: 147 DLNCGGIGWIIRDDKGQPVRAGCKKVDKKWKISWLEAWAICEGLKSIPVEAPA-LRIESD 206
           +   GGIGWI+ D +G+ V AG  K+ +K +I+ LE   I  GL+ I +++ + + +ESD
Sbjct: 130 EREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESD 189

Query: 207 AREVVKLLRDEDED 211
           + EV++L++ ED D
Sbjct: 190 SVEVIRLMKKEDVD 197

BLAST of Lag0017118 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.4e-24
Identity = 72/191 (37.70%), Postives = 104/191 (54.45%), Query Frame = 0

Query: 46  DASGEDRMKRSLIICWQIWCFRNEERNNKQIY---NPEQLDNKIQRYCDELLTNH----- 105
           D +GE+  +RS+II WQIW     E  NK I+   +PE  D  IQ   D  + N      
Sbjct: 2   DKAGEEERRRSMIIAWQIW-----EMRNKSIFKGVHPETRD--IQLAIDRYIINSAGRNT 61

Query: 106 -------NTHLPLARRVSAVDDDPQMLLWIPAPKGVWKLNSDACWREDLNCGGIGWIIRD 165
                  N  L L RR+    +D     W P     WKLN++A WR D N GGIGWI+RD
Sbjct: 62  NLKGKSTNKDLHLIRRI----EDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRD 121

Query: 166 DKGQPVRAGCKKVDKKWKISWLEAWAICEGLKSIPVE-APALRIESDAREVVKLLRDEDE 221
           +KG+ ++A C+ +  +  I++LE  AICEGL++I  E    + +ESD+ E + LL  + +
Sbjct: 122 EKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQ 181

BLAST of Lag0017118 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 71/202 (35.15%), Postives = 107/202 (52.97%), Query Frame = 0

Query: 46  DASGEDRMKRSLIICWQIWCFRNE--------ERNNKQIYNPEQLDNKIQRYCDELLTNH 105
           D +GE+  +RS+II WQIW  RN+        E  + Q+     + N   R  +    + 
Sbjct: 2   DKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSA 61

Query: 106 NTHLPLARRVSAVDDDPQMLLWIPAPKGVWKLNSDACWREDLNCGGIGWIIRDDKGQPVR 165
           N  L L RR+     D     W P     WKLN+DA WR D N GGIGWI+RD+KG+ ++
Sbjct: 62  NKDLHLIRRIG----DNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIK 121

Query: 166 AGCKKVDKKWKISWLEAWAICEGLKSI------PVEAPALR---IESDAREVVKLLRDED 225
           A C+ +  +  I++LE  AICEGL++I      P++    R   +ESD+ E + LL  + 
Sbjct: 122 ADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQC 181

Query: 226 EDWSEISNFIKEAKALILSKKI 231
           +D +EI   ++E   ++   KI
Sbjct: 182 QDQTEIIWLLEEIWQMMEDMKI 199

BLAST of Lag0017118 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.5e-22
Identity = 69/209 (33.01%), Postives = 103/209 (49.28%), Query Frame = 0

Query: 5   FLFRESNLFLTGSQLPC--SKTHSRAGWTSADYLELIWNESSSDASGEDRMKRSLIICWQ 64
           + F +S + L   +  C  ++   R  WT+ +Y E +      D +GE+  +RS+II  Q
Sbjct: 107 WFFDKSMVMLEEPRANCNFNELEFRTNWTTKEYWEWL-----MDKAGEEERRRSMIIACQ 166

Query: 65  IWCFRNEERNNKQIYNPEQLDNKIQRYC------DELLTNHNTHLPLARRVSAVDDDPQM 124
           IW  RN+            +   I RY       D  L   +      RR+     D   
Sbjct: 167 IWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRKSKDFHPIRRIG----DNTR 226

Query: 125 LLWIPAPKGVWKLNSDACWREDLNCGGIGWIIRDDKGQPVRAGCKKVDKKWKISWLEAWA 184
             W P     WKLN+DA WR D N  GIGWI+RD+KG+ ++ GC+ +  +  I++LE  A
Sbjct: 227 ARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMA 286

Query: 185 ICEGLKSIPVE-APALRIESDAREVVKLL 205
           ICEGL++I  E    + +ESD+ E + LL
Sbjct: 287 ICEGLRAIRQEHCRPIHLESDSLEAIHLL 306

BLAST of Lag0017118 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.4e-22
Identity = 65/185 (35.14%), Postives = 93/185 (50.27%), Query Frame = 0

Query: 27  RAGWTSADYLELIWNESSSDASGEDRMKRSLIICWQIWCFRNEERNNKQIYNPEQLDNKI 86
           R  WT+ +Y E +      D +GE+  +RS+II  QIW  RN+            +   I
Sbjct: 166 RTNWTTKEYWEWL-----MDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAI 225

Query: 87  QRYC------DELLTNHNTHLPLARRVSAVDDDPQMLLWIPAPKGVWKLNSDACWREDLN 146
            RY       D  L   +      RR+     D     W P     WKLN+DA WR D N
Sbjct: 226 DRYIINSAGQDTNLKRKSKDFHPIRRIG----DNTRARWKPPTSNSWKLNTDAAWRADTN 285

Query: 147 CGGIGWIIRDDKGQPVRAGCKKVDKKWKISWLEAWAICEGLKSIPVE-APALRIESDARE 205
             GIGWI+RD+KG+ ++ GC+ +  +  I++LE  AICEGL++I  E    + +ESD+ E
Sbjct: 286 TDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLE 341

BLAST of Lag0017118 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-17
Identity = 65/194 (33.51%), Postives = 102/194 (52.58%), Query Frame = 0

Query: 27  RAGWTSADYLELIWNESSSDASGEDRMKRSLIICWQIWCFRNEERNNKQIYNPEQLDNKI 86
           R  WT+ D     WN   +  S E+ +  S++I WQIW  RN      +  + +QLD  I
Sbjct: 10  RVHWTNKD----SWNWLVNMLSDEE-VATSMVIAWQIWESRNRSIFRGETIDEQQLDRSI 69

Query: 87  QRYCDELLTNHNTHLPLARRVSAVD-------DDPQML--LWIPAPKGVWKLNSDACWRE 146
             + +  + +  T +   RR    D       ++  ML   W   P   WKLN+DA W E
Sbjct: 70  VLFINSNI-DKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSE 129

Query: 147 DLNCGGIGWIIRDDKGQPVRAGCKKVDKKWKISWLEAWAICEGLKSIPVEAPA-LRIESD 206
           +   GGIGWI+ D +G+ V AG  K+ +K +I+ LE   I  GL+ I +++ + + +ESD
Sbjct: 130 EREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSRSPIYLESD 189

Query: 207 AREVVKLLRDEDED 211
           + EV++L++ ED D
Sbjct: 190 SVEVIRLMKKEDVD 197

BLAST of Lag0017118 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-09
Identity = 53/219 (24.20%), Postives = 98/219 (44.75%), Query Frame = 0

Query: 30  WTSADYLELIW--NESSSDASGEDRMKRSLIICWQIWCFRNEERNNKQIYNPEQLDNKIQ 89
           W  + Y+ L W  N  + +   E   +    + W++W  RNE     + +N +++   ++
Sbjct: 332 WADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEV---LR 391

Query: 90  RYCDELLTNHNTHLPLARRVSAVDDDPQML-----LWIPAPKGVWKLNSDACWREDLNCG 149
           R  D+L         +     +    PQ+       W P P    K N+DA W  D    
Sbjct: 392 RAEDDL-----EEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERC 451

Query: 150 GIGWIIRDDKGQPVRAGCKKVDKKWKI--SWLEA--WAICEGLKSIPVEAPALRIESDAR 209
           GIGW++R++KG+    G + + K   +  + LEA  WA+   L     +   +  ESD++
Sbjct: 452 GIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAV---LSLSRFQYNYVIFESDSQ 511

Query: 210 EVVKLLRDEDEDWSEISNFIKEAKALILSKKIEKIVQMP 238
            ++++L + DE W  +   I++ + L+      K V +P
Sbjct: 512 VLIEIL-NNDEIWPSLKPTIQDLQRLLSQFTEVKFVFIP 538

BLAST of Lag0017118 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 6.5e-07
Identity = 49/203 (24.14%), Postives = 90/203 (44.33%), Query Frame = 0

Query: 30  WTSADYLELIWNESSSDASGEDRMKRSLI--ICWQIWCFRNEERNNKQIYNPEQLDNKIQ 89
           WT + Y  L W  +      +     +L+  + W++W  RNE     + Y+  +    + 
Sbjct: 49  WTDSLYANLYWVLNLEVEIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPE----VL 108

Query: 90  RYCDELLTNHNTHLPLARRVSAVDDDPQMLLWIPAPKGVW-KLNSDACWREDLNCGGIGW 149
           R   E     +T   L  + S    +  + +   AP   W K N+DA W+ +    GIGW
Sbjct: 109 RRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGW 168

Query: 150 IIRDDKGQPVRAGCKKVDKKWKI--SWLEA--WAICEGLKSIPVEAPALRIESDAREVVK 209
           I+R++ G  +  G + + +   +  + LEA  WA+   L         +  ESDA+ +V 
Sbjct: 169 ILRNESGGVLWMGARALPRTKNVLEAELEALRWAV---LTMSRFNYKRIIFESDAQALVN 228

Query: 210 LLRDEDEDWSEISNFIKEAKALI 226
           LL + D+ W  +   +++ + L+
Sbjct: 229 LL-NSDDFWPTLQPALEDIQQLL 243

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143535.17.1e-2437.70uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022156777.12.7e-2335.15uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022154991.11.1e-2133.01uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
XP_022154990.11.9e-2135.14uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_022143317.11.1e-1633.51uncharacterized protein LOC111013216 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CP263.4e-2437.70uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DSV11.3e-2335.15uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DQC95.5e-2233.01uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DL649.4e-2235.14uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CQG05.3e-1733.51uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
Match NameE-valueIdentityDescription
AT4G29090.11.4e-0924.20Ribonuclease H-like superfamily protein [more]
AT2G34320.16.5e-0724.14Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 125..240
e-value: 1.1E-6
score: 30.7
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 130..226
e-value: 6.3E-13
score: 48.6
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 114..217
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 129..231
e-value: 3.22338E-13
score: 62.7168
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 126..225

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017118.1Lag0017118.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity